14 |
- pick a URL |
- pick a URL |
15 |
TBD |
TBD |
16 |
|
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- mitgcm.org very front page. |
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|
o too many clicks to get to model manual. |
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make doc link go to mitgcm.org/r2_web_testing/latest |
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and add "HowTo" reference etc... to /latest page |
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|
17 |
- mitgcm.org/r2_web_testing/latest |
- mitgcm.org/r2_web_testing/latest |
18 |
o add another short-cut for quick download |
o add another short-cut for quick download |
19 |
|
|
293 |
to add: mention the angle of the grid direction relative to |
to add: mention the angle of the grid direction relative to |
294 |
Eastward, Northward direction. |
Eastward, Northward direction. |
295 |
+ mention horizGridFile= in file "data" (PARM04) |
+ mention horizGridFile= in file "data" (PARM04) |
296 |
- add cylindrical grid description |
- add cylindrical polar grid description |
297 |
need to do a better job of relating model variables to this diagram |
need to do a better job of relating model variables to this diagram |
298 |
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|
299 |
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|
320 |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
321 |
in code need to explain why cos()3/2 turns out to be |
in code need to explain why cos()3/2 turns out to be |
322 |
scaling (not cos()2) |
scaling (not cos()2) |
323 |
|
- need to reference the smag/leith section. |
324 |
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|
325 |
2.13.6 Vertical dissipation |
2.13.6 Vertical dissipation |
326 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
344 |
- does not use std notation |
- does not use std notation |
345 |
- would be better as an appendix of section 2.20: |
- would be better as an appendix of section 2.20: |
346 |
(e.g changing the tile to: |
(e.g changing the tile to: |
347 |
|
- talk to Baylor |
348 |
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
349 |
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350 |
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351 |
JM |
JM |
352 |
|
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>>>> From Ed |
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Here are the remaining bits for Chap 4 : |
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|
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- The grammar/flow could still use some work. Boo was an English |
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major and has experience editing/proofing technical papers. I |
|
|
could print out a copy and ask her to read it and suggest |
|
|
improvements. |
|
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|
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|
- missing references (if you point me towards URLs, I'll add them |
|
|
to the bibliography): |
|
|
\ref{ref hoe and hill, ecmwf} |
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|
\ref{magicgarden} |
|
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\ref{IBMLAPI} |
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\ref{Memorychannel} |
|
|
\ref{hoe-hill:99} |
|
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|
|
|
- There are a few empty sub-sections at the end of Chap 4 that |
|
|
should either be commented out or fleshed out. |
|
|
|
|
|
and thats about it for Chap 4. |
|
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|
|
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Add more to quick links on front page |
|
|
|
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Chapter 6 |
|
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|
|
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the master package diagram does not appear in the document |
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|
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pkg/ptracers doesn't seem to have any documentation (see packages list below) |
|
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|
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Master list of packages (add this to beginning of chap 6) |
|
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admtlm/ - autodiff (chapter 5) |
|
|
aim/ - retired |
|
|
aim_compon_interf/ - 6.6 (no content yet) |
|
|
aim_ocn_coupler/ - 6.6 (no content yet) |
|
|
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
|
|
atm_common/ - 6.6 (no content yet) |
|
|
autodiff/ - autodiff (chapter 5) |
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|
bulk_force/ - 6.3.3 |
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|
cal/ - 6.3.5 |
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|
cd_code/ - chapter 2 (JM check) |
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|
cfc/ - not sure |
|
|
chronos/ - AM to check |
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|
compon_communic/ - 6.6 (no content yet) |
|
|
cost/ - not sure, check with PH |
|
|
ctrl/ - not sure, check with PH |
|
|
debug/ - JM may do something in chapter 7 (utilities) |
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|
diagnostics/ - 7.1 |
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|
dic/ - 6.7.2 |
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|
ebm/ - not sure |
|
|
ecco/ - chapter 8 |
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|
embed_files/ - add something to chapter 7 |
|
|
ex3/ - rename to exch3 |
|
|
exch2/ - 6.2.2 |
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|
exf/ - 6.3.4 |
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|
fizhi/ - 6.4.3 |
|
|
flt/ - in chapter 2 (JM check) |
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|
gchem/ - 6.7.1 |
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|
generic_advdiff/ - in chapter 2 (JM check) |
|
|
ggl90/ - nothing, (Martin?) |
|
|
gmredi/ - in chapter 2 (JM check). also need |
|
|
Ferrari & Mc tapering |
|
|
grdchk/ - grdchk (chapter 5 - check with PH) |
|
|
gridalt/ - 6.2.4 |
|
|
kpp/ - 6.3.2 |
|
|
land/ - 6.4.2 (not connected to code - JM to fix) |
|
|
matrix/ - Samar |
|
|
mdsio/ - 7.3.1 |
|
|
mnc/ - 7.2.1 |
|
|
mom_common/ - in chapter 2 (JM check) |
|
|
mom_fluxform/ - in chapter 2 (JM check) |
|
|
mom_vecinv/ - in chapter 2 (JM check) |
|
|
monitor/ - 7.4 |
|
|
my82/ - nothing, (martin?) |
|
|
obcs/ - 6.3 (needs a check) |
|
|
ocn_compon_interf/ - 6.6 (no content yet) |
|
|
offline/ - nothing, tutorials that need work but no package section entry |
|
|
opps/ - nothing, (martin?) |
|
|
pp81/ - nothing, (martin?) |
|
|
profiles/ - GAEL |
|
|
ptracers/ - JM + SD to write something |
|
|
rbcs/ - talk to steph |
|
|
runclock/ - runclock |
|
|
rw/ - not sure |
|
|
sbo/ - text in sbo_descruption.tex but not linked into |
|
|
part6 |
|
|
seaice/ - 6.5.2 - no equations, dimitris has promised some |
|
|
shap_filt/ - chapter 2, JM to check |
|
|
shelfice/ - nothing yet (martin?) |
|
|
solver/ - empty |
|
|
sphere/ - chapter 5 or 8 (PH to check) |
|
|
therm_seaice/ - empty |
|
|
thsice/ - 6.5.1 (JM to update?) |
|
|
timeave/ - retiring...... |
|
|
zonal_filt/ - chapter 2 (JM to check) |
|
|
|
|
|
Possible for chap 7 - Daniels grafix/ stuff |
|
|
|
|
|
Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
|
|
|
|
|
Figure 6.8 is missing |
|
|
|
|
|
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
|
|
Figure 6.8 is missing |
|
|
|
|
|
|
|
|
>>>> From Andrea |
|
|
|
|
|
to do list for chap 7: |
|
|
|
|
|
|
|
|
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
|
|
the links are pointing to the proper place |
|
|
|
|
|
7.5.1 - add Graphix to the list of stuff in utils/matlab |
|
|
7.5.2 - empty |
|
|
|
|
|
|
|
|
andrea |
|
353 |
|
|
354 |
>>>> From Andrea |
>>>> From Andrea |
355 |
|
|
361 |
divide chapter 3 more clearly into 2 sections? |
divide chapter 3 more clearly into 2 sections? |
362 |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
363 |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
364 |
|
[DONE] |
365 |
|
|
366 |
3.1 - don't need a link to the outside of the document (remove it) |
3.1 - don't need a link to the outside of the document (remove it) |
367 |
- link to htdig is broken |
- link to htdig is broken |
447 |
offline - duplicate inputs, what is it, tidy up cfc v. |
offline - duplicate inputs, what is it, tidy up cfc v. |
448 |
other offline. JM thinks these need tidying up. |
other offline. JM thinks these need tidying up. |
449 |
|
|
450 |
|
Which of the following are which tutorial? |
451 |
|
! MLAdjust |
452 |
|
adjust_nlfs.cs-32x32x1 |
453 |
|
aim.5l_XZ_Equatorial_Slice |
454 |
|
biogeo |
455 |
|
aim.5l_zon-ave |
456 |
|
coupled_ucla |
457 |
|
cfc_offline |
458 |
|
exp3 |
459 |
|
global2x2_tot |
460 |
|
global1x1_tot |
461 |
|
global_ocean.cubed_wEXF |
462 |
|
global_with_CFC11 |
463 |
|
goz |
464 |
|
gop |
465 |
|
natl_box_obcs |
466 |
|
natl_box_forward |
467 |
|
spinup_optim |
468 |
|
tutorial_held_suarez_cs |
469 |
|
vero |
470 |
|
inverted_barometer |
471 |
|
global_ocean.cubed32x32x30 |
472 |
|
exp1 |
473 |
|
advect_cs |
474 |
|
dic_example |
475 |
|
fizhi-gridalt-hs |
476 |
|
global_ocean_pressure |
477 |
|
matrix_example |
478 |
|
exp4 |
479 |
|
solid-body.cs-32x32x1 |
480 |
|
cfc_example |
481 |
|
flt_example |
482 |
|
adjustment.cs-32x32x1 |
483 |
|
advect_xz |
484 |
|
rotating_tank |
485 |
|
ideal_2D_oce |
486 |
|
global_ocean.90x40x15 |
487 |
|
front_relax |
488 |
|
aim.5l_LatLon |
489 |
|
lab_sea |
490 |
|
hs94.cs-32x32x5 |
491 |
|
global_with_exf |
492 |
|
exp2 |
493 |
|
tidal_basin_2d |
494 |
|
fizhi-cs-32x32x10 |
495 |
|
exp5 |
496 |
|
global_ocean.cs32x15 |
497 |
|
OpenAD |
498 |
|
hs94.1x64x5 |
499 |
|
fizhi-cs-aqualev10 |
500 |
|
exp0 |
501 |
|
dome |
502 |
|
aim.5l_Equatorial_Channel |
503 |
|
aim.5l_cs |
504 |
|
hs94.128x64x5 |
505 |
|
prm |
506 |
|
carbon |
507 |
|
plume_on_slope |
508 |
|
natl_box_adjoint |
509 |
|
vermix |
510 |
|
cpl_aim+ocn |
511 |
|
global_ocean_ebm |
512 |
|
internal_wave |
513 |
|
advect_xy |
514 |
|
natl_box |
515 |
|
adjustment.128x64x1 |
516 |
|
|
517 |
|
>>>> From Ed |
518 |
|
|
519 |
|
Here are the remaining bits for Chap 4 : |
520 |
|
|
521 |
|
- missing references (if you point me towards URLs, I'll add them |
522 |
|
to the bibliography): |
523 |
|
\ref{ref hoe and hill, ecmwf} |
524 |
|
\ref{magicgarden} |
525 |
|
\ref{IBMLAPI} |
526 |
|
\ref{Memorychannel} |
527 |
|
\ref{hoe-hill:99} |
528 |
|
|
529 |
|
- There are a few empty sub-sections at the end of Chap 4 that |
530 |
|
should either be commented out or fleshed out. |
531 |
|
|
532 |
|
and thats about it for Chap 4. |
533 |
|
|
534 |
|
|
535 |
|
Add more to quick links on front page |
536 |
|
|
537 |
|
Chapter 6 |
538 |
|
|
539 |
|
the master package diagram does not appear in the document |
540 |
|
|
541 |
|
Master list of packages (add this to beginning of chap 6) |
542 |
|
|
543 |
|
admtlm/ - autodiff (chapter 5) |
544 |
|
aim/ - retired |
545 |
|
aim_compon_interf/ - 6.6 (no content yet)(Daniel + JM) |
546 |
|
aim_ocn_coupler/ - 6.6 (no content yet) |
547 |
|
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
548 |
|
atm_common/ - nothing in this package (6.4.1 related) |
549 |
|
autodiff/ - autodiff (chapter 5) |
550 |
|
bulk_force/ - 6.3.3 |
551 |
|
cal/ - 6.3.5 |
552 |
|
cd_code/ - chapter 2 (JM check add a reference to paper, |
553 |
|
mention parameter in data) |
554 |
|
cfc/ - not sure (CNH to talk to Steph and Helen) |
555 |
|
chronos/ - AM to check (not being used - Andrea to kill it) |
556 |
|
compon_communic/ - 6.6 (no content yet)(Daniel + JM) |
557 |
|
cost/ - not sure, check with PH |
558 |
|
ctrl/ - not sure, check with PH |
559 |
|
debug/ - JM may do something in chapter 7 (utilities) |
560 |
|
diagnostics/ - 7.1 |
561 |
|
dic/ - 6.7.2 |
562 |
|
ebm/ - (check with PH) |
563 |
|
ecco/ - chapter 8 |
564 |
|
embed_files/ - add something to chapter 7 |
565 |
|
exch2/ - 6.2.2 |
566 |
|
exf/ - 6.3.4 |
567 |
|
fizhi/ - 6.4.3 |
568 |
|
flt/ - (PH check) |
569 |
|
gchem/ - 6.7.1 |
570 |
|
generic_advdiff/ - in chapter 2 (JM check) |
571 |
|
ggl90/ - nothing, (Martin?) |
572 |
|
gmredi/ - in chapter 2 (JM check). also need |
573 |
|
Ferrari & Mc transition zone stuff (Samar doing this) |
574 |
|
get dfer to read this |
575 |
|
grdchk/ - grdchk (chapter 5 - check with PH) |
576 |
|
gridalt/ - 6.2.4 |
577 |
|
kpp/ - 6.3.2 |
578 |
|
land/ - 6.4.2 (not connected to code Rong's notes - JM to fix) |
579 |
|
matrix/ - Samar |
580 |
|
mdsio/ - 7.3.1 |
581 |
|
mnc/ - 7.2.1 |
582 |
|
mom_common/ - in chapter 2 (JM check) |
583 |
|
mom_fluxform/ - in chapter 2 (JM check) |
584 |
|
mom_vecinv/ - in chapter 2 (JM check) |
585 |
|
monitor/ - 7.4 |
586 |
|
my82/ - nothing, (martin?) |
587 |
|
obcs/ - 6.3 (needs a check - ask PH to read) |
588 |
|
ocn_compon_interf/ - 6.6 (no content yet) |
589 |
|
offline/ - nothing, tutorials that need work but no package section entry |
590 |
|
trivial to document (CNH to do) |
591 |
|
opps/ - nothing, (martin?) |
592 |
|
pp81/ - nothing, (martin?) |
593 |
|
profiles/ - GAEL |
594 |
|
ptracers/ - JM + SD + Martin to write something (nothing for this |
595 |
|
at the moment) |
596 |
|
AM has diagnostics table for this. |
597 |
|
rbcs/ - CNH to talk to steph |
598 |
|
runclock/ - runclock - CNH |
599 |
|
rw/ - not sure - going to stay says JMC. quick IO calls |
600 |
|
JMC to write a quick note for that. |
601 |
|
sbo/ - text in sbo_descruption.tex but not linked into |
602 |
|
part6 - CNH |
603 |
|
seaice/ - 6.5.2 - no equations, dimitris has promised some |
604 |
|
shap_filt/ - chapter 2, JM to check |
605 |
|
shelfice/ - nothing yet (martin?) |
606 |
|
solver/ - empty (go away?) |
607 |
|
sphere/ - chapter 5 or 8 (PH to check) |
608 |
|
therm_seaice/ - empty (go away?) |
609 |
|
thsice/ - 6.5.1 (JM to update?) |
610 |
|
timeave/ - retiring...... |
611 |
|
zonal_filt/ - chapter 2 (JM to check) |
612 |
|
|
613 |
|
list an expeiment which uses package? CNH |
614 |
|
|
615 |
|
[DONE]Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
616 |
|
|
617 |
|
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
618 |
|
Figure 6.8 is missing |
619 |
|
|
620 |
|
|
621 |
|
>>>> From Andrea |
622 |
|
|
623 |
|
to do list for chap 7: |
624 |
|
|
625 |
|
|
626 |
|
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
627 |
|
the links are pointing to the proper place |
628 |
|
|
629 |
|
7.5.1 - add Graphix to the list of stuff in utils/matlab |
630 |
|
7.5.2 - empty |
631 |
|
|
632 |
|
|
633 |
|
andrea |
634 |
|
|
635 |
|
|
636 |
9. Model uses |
9. Model uses |
637 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |