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Editors |
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Overall - JM, AM, PH, CNH, EH3 |
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Front content - EH3 |
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Chapter 1 - CNH |
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Chapter 2 - JMC |
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Chapter 3 - AM |
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Chapter 4 - CNH |
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Chapter 5 - PH |
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Chapter 6 - AM |
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Chapter 7 - EH3 |
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Chapter 8 - PH |
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Chapter 9 - CNH (Applications) |
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Chapter 10 - JMC (Under development chapter) |
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Biblio - EH3 |
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29 |
Rebuild and set to do cron build - DONE on hugo |
Rebuild and set to do cron build - DONE on hugo |
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To do |
To do |
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Add an "Under development, chapter" - shortish description of what |
Add an "Under development, chapter" - shortish description of what |
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is available (last chapter) |
is available (last chapter) |
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- add in example latex for formatting author names in different pieces. |
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this aknowledges peoples contributions and gives ref for who |
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to talk to. |
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o HTML, scripts and front content |
o HTML, scripts and front content |
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56 |
Tutorials (broken) |
Tutorials (broken) |
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Browse Code |
Browse Code |
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o mitgcm.org (front content) [DONE] |
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Get Code (where does this go to?) |
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get rid of * CVS current bullet |
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make HTML-enabled CVS code browser leap to MITgcm/MITgcm |
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o authors |
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John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen, |
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Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos, |
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Gael - others? |
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o words on http://mitgcm.org/r2_web_testing/latest |
o words on http://mitgcm.org/r2_web_testing/latest |
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change to |
change to |
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"access on-line Auser manual/A and Atable of contents/A |
"access on-line Auser manual/A and Atable of contents/A |
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o List of key papers needs to be updated and reformatted |
o List of key papers needs to be updated and reformatted |
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o Global atmosphere: `Held Suarez', |
o Global atmosphere: `Held Suarez', |
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update Adcroft reference |
update Adcroft reference |
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fix up ingrid link and frame (ingrid movies seem to be broken?) |
fix up ingrid link and frame (ingrid movies seem to be broken?) |
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o coupled aqua, ridge world etc... |
o coupled aqua, ridge world etc... |
206 |
- links to ingrid output |
- links to ingrid output |
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get stuff from Daniel |
get stuff from Daniel |
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Davids donut movie |
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o constrained lab simulation |
o constrained lab simulation |
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- links to ingrid output for model and lab |
- links to ingrid output for model and lab |
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- would be nice to have an active link to the fortran-file |
- would be nice to have an active link to the fortran-file |
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for all the S/R & eq.Number in the "calling-tree" boxes |
for all the S/R & eq.Number in the "calling-tree" boxes |
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- search for CALC_MOM_RHS and replace it by the appropriate S/R |
- search for CALC_MOM_RHS and replace it by the appropriate S/R |
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(mom_flux_form, mom_vecinv, dynamics) |
(mom_flux_form, mom_vecinv, dynamics) <- DONE |
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- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
238 |
was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
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in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
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the 2 sections. |
the 2 sections. |
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in content: Horizontal Dissipation: 2 times in vector-invariant section |
in content: Horizontal Dissipation: 2 times in vector-invariant section |
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<- DONE |
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2.1 time-stepping (part2/time_stepping.tex) |
2.1 time-stepping (part2/time_stepping.tex) |
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>> In all the above configurations it is also possible to substitute the |
>> In all the above configurations it is also possible to substitute the |
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>> Adams-Bashforth with an alternative time-stepping scheme for terms |
>> Adams-Bashforth with an alternative time-stepping scheme for terms |
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>> evaluated explicitly in time |
>> evaluated explicitly in time |
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<- Leave it general. |
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2.2 rigid-lid: |
2.2 rigid-lid: |
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- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
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2.9 Variants on Free-Surface |
2.9 Variants on Free-Surface |
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- Delta.t mis-written (eq.2.73) |
- Delta.t mis-written (eq.2.73) <- DONE |
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- Eq.Num missing (has been fixed since) |
- Eq.Num missing <- DONE |
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- u* is stored in gU (and not in gUnm1) |
- u* is stored in gU (and not in gUnm1) <- DONE |
293 |
- Phi_nh in NH_VARS.h |
- Phi_nh in NH_VARS.h <- DONE |
294 |
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
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INI_CG2D, INI_CG3D |
INI_CG2D, INI_CG3D |
296 |
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300 |
2.9.2 NLFS |
2.9.2 NLFS |
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- eq.Nb are wrong in html |
- eq.Nb are wrong in html |
302 |
- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
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<- DONE |
304 |
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2.10.1 Notation |
2.10.1 Notation |
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- Area definition is not really used like this |
- Area definition is not really used like this |
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Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
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the model variables) are used (e.g., see section 2.10.5) |
the model variables) are used (e.g., see section 2.10.5) |
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<- DONE |
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314 |
2.10.5 Horizontal grid: |
2.10.5 Horizontal grid: |
315 |
- fig.2.8 : should use Aw,As consistently in this figure description, |
- fig.2.8 : should use Aw,As consistently in this figure description, |
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in the figure itself, as it is in the text. |
in the figure itself, as it is in the text. <- DONE |
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- curvilinear: |
- curvilinear: |
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to add: mention the angle of the grid direction relative to |
to add: mention the angle of the grid direction relative to |
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Eastward, Northward direction. |
Eastward, Northward direction. |
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365 |
2.16 & 2.17 & 2.18 : |
2.16 & 2.17 & 2.18 : |
366 |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
367 |
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- fix equations 2.202 & 2.203 (thanks to Martin) <- DONE |
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369 |
2.20.2 mercator, non-dimensional Equations: |
2.20.2 mercator, non-dimensional Equations: |
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- does not use std notation |
- does not use std notation |
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(e.g changing the tile to: |
(e.g changing the tile to: |
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- talk to Baylor |
- talk to Baylor |
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Appendix: non-dimensional Equations on Spherical-Polar grid.) |
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
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<- No (Chris said) |
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377 |
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378 |
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Diagrams of grid locations etc.... and what variables and output files |
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and/or netcdf variable names are not very easy to figure out and follow. |
380 |
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It would be good to redo and extend these diagrams and align with GRID.h |
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content. |
382 |
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383 |
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384 |
JM |
JM |
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392 |
Almost all of the 'math mode' text is dropped down as subscripts |
Almost all of the 'math mode' text is dropped down as subscripts |
393 |
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divide chapter 3 more clearly into 2 sections? |
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(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
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then 3.19 and 3.20 are informational again - rearrange subsections?) |
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[DONE] |
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394 |
3.1 - don't need a link to the outside of the document (remove it) |
3.1 - don't need a link to the outside of the document (remove it) |
395 |
- link to htdig is broken |
- link to htdig is broken |
396 |
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are written. |
are written. |
437 |
3.6.1.2 - needs to be moved to inside section 3.6.2 |
3.6.1.2 - needs to be moved to inside section 3.6.2 |
438 |
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3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18) |
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underneath this one and leave the text for 3.7 in place |
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439 |
All the 'overview' sections need some reference to the name of the experiment in |
All the 'overview' sections need some reference to the name of the experiment in |
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the verification directory |
the verification directory |
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other offline. JM thinks these need tidying up. |
other offline. JM thinks these need tidying up. |
474 |
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475 |
Which of the following are which tutorial? |
Which of the following are which tutorial? |
476 |
! MLAdjust |
adjustment.128x64x1 |
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adjust_nlfs.cs-32x32x1 |
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aim.5l_XZ_Equatorial_Slice |
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biogeo |
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aim.5l_zon-ave |
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coupled_ucla |
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cfc_offline |
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exp3 |
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global2x2_tot |
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global1x1_tot |
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global_ocean.cubed_wEXF |
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global_with_CFC11 |
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goz |
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gop |
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natl_box_obcs |
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natl_box_forward |
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spinup_optim |
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tutorial_held_suarez_cs |
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vero |
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inverted_barometer |
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global_ocean.cubed32x32x30 |
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exp1 |
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advect_cs |
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dic_example |
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fizhi-gridalt-hs |
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global_ocean_pressure |
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matrix_example |
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exp4 |
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solid-body.cs-32x32x1 |
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cfc_example |
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flt_example |
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477 |
adjustment.cs-32x32x1 |
adjustment.cs-32x32x1 |
478 |
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advect_cs |
479 |
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advect_xy |
480 |
advect_xz |
advect_xz |
481 |
rotating_tank |
aim.5l_cs |
482 |
ideal_2D_oce |
aim.5l_Equatorial_Channel |
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global_ocean.90x40x15 |
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front_relax |
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483 |
aim.5l_LatLon |
aim.5l_LatLon |
484 |
lab_sea |
biogeo |
485 |
hs94.cs-32x32x5 |
bottom_ctrl_5x5 |
486 |
global_with_exf |
cfc_example |
487 |
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cpl_aim+ocn |
488 |
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dome |
489 |
exp2 |
exp2 |
490 |
tidal_basin_2d |
exp4 |
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fizhi-cs-32x32x10 |
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491 |
exp5 |
exp5 |
492 |
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fizhi-cs-32x32x10 |
493 |
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fizhi-cs-aqualev20 |
494 |
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fizhi-gridalt-hs |
495 |
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flt_example |
496 |
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front_relax |
497 |
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global1x1_tot |
498 |
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global2x2_tot |
499 |
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global_ocean.90x40x15 |
500 |
global_ocean.cs32x15 |
global_ocean.cs32x15 |
501 |
OpenAD |
global_ocean.cubed32x32x30 |
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hs94.1x64x5 |
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fizhi-cs-aqualev10 |
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exp0 |
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dome |
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aim.5l_Equatorial_Channel |
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aim.5l_cs |
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hs94.128x64x5 |
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prm |
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carbon |
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plume_on_slope |
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natl_box_adjoint |
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vermix |
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cpl_aim+ocn |
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502 |
global_ocean_ebm |
global_ocean_ebm |
503 |
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global_with_exf |
504 |
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hs94.128x64x5 |
505 |
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hs94.1x64x5 |
506 |
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hs94.cs-32x32x5 |
507 |
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ideal_2D_oce |
508 |
internal_wave |
internal_wave |
509 |
advect_xy |
inverted_barometer |
510 |
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lab_sea |
511 |
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matrix_example |
512 |
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MLAdjust |
513 |
natl_box |
natl_box |
514 |
adjustment.128x64x1 |
natl_box_adjoint |
515 |
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OpenAD |
516 |
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rotating_tank |
517 |
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solid-body.cs-32x32x1 |
518 |
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tidal_basin_2d |
519 |
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tutorial_baroclinic_gyre |
520 |
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tutorial_barotropic_gyre |
521 |
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tutorial_cfc_offline |
522 |
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tutorial_deep_convection |
523 |
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tutorial_global_oce_biogeo |
524 |
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tutorial_global_oce_in_p |
525 |
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tutorial_global_oce_latlon |
526 |
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tutorial_global_oce_optim |
527 |
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tutorial_held_suarez_cs |
528 |
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tutorial_offline |
529 |
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tutorial_plume_on_slope |
530 |
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tutorial_tracer_adjsens |
531 |
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vermix |
532 |
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533 |
>>>> From Ed |
>>>> From Ed |
534 |
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613 |
rbcs/ - CNH to talk to steph |
rbcs/ - CNH to talk to steph |
614 |
runclock/ - runclock - CNH |
runclock/ - runclock - CNH |
615 |
rw/ - not sure - going to stay says JMC. quick IO calls |
rw/ - not sure - going to stay says JMC. quick IO calls |
616 |
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JMC to write a quick note for that. |
617 |
sbo/ - text in sbo_descruption.tex but not linked into |
sbo/ - text in sbo_descruption.tex but not linked into |
618 |
part6 |
part6 - CNH |
619 |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
620 |
shap_filt/ - chapter 2, JM to check |
shap_filt/ - chapter 2, JM to check |
621 |
shelfice/ - nothing yet (martin?) |
shelfice/ - nothing yet (martin?) |
622 |
solver/ - empty |
solver/ - empty (go away?) |
623 |
sphere/ - chapter 5 or 8 (PH to check) |
sphere/ - chapter 5 or 8 (PH to check) |
624 |
therm_seaice/ - empty |
therm_seaice/ - empty (go away?) |
625 |
thsice/ - 6.5.1 (JM to update?) |
thsice/ - 6.5.1 (JM to update?) |
626 |
timeave/ - retiring...... |
timeave/ - retiring...... |
627 |
zonal_filt/ - chapter 2 (JM to check) |
zonal_filt/ - chapter 2 (JM to check) |
628 |
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629 |
list an expeiment which uses package? CNH |
list an expeiment which uses package? CNH |
630 |
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Possible for chap 7 - Daniels grafix/ stuff |
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Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
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Figure 6.8 is missing |
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631 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
632 |
Figure 6.8 is missing |
Figure 6.8 is missing |
633 |
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634 |
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635 |
>>>> From Andrea |
===== Chapter 7 ===== [EH3 editing] : |
636 |
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637 |
to do list for chap 7: |
7.1.x - JMC: please add description of: |
638 |
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- diagstat |
639 |
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- new temporal averaging feature |
640 |
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641 |
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7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) |
642 |
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643 |
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
7.5.2 - get bathymetry pre-processing stuff from Patrick |
644 |
the links are pointing to the proper place |
and then describe it |
645 |
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646 |
7.5.1 - add Graphix to the list of stuff in utils/matlab |
add something on spgrid mesh generator (maybe)? |
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7.5.2 - empty |
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647 |
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648 |
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649 |
andrea |
andrea |
650 |
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651 |
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652 |
9. Model uses |
9. Publications using MITgcm --> "Previous Applications of MITgcm" |
653 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
654 |
(check in support for more names) |
(check in support for more names) |
655 |
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656 |
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10. Under development |
657 |
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658 |
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Constantinos LCML |
659 |
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660 |
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661 |
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Bibliography |
662 |
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663 |
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tidy up from misc - .tex |