1 |
Rebuild and set to do cron build - DONE on hugo |
2 |
|
3 |
To do |
4 |
|
5 |
- where to put under development links? |
6 |
JMC would like to have some mention of unfinished things (checked in |
7 |
but not that tested e.g. AB3) |
8 |
Add an "Under development, chapter" |
9 |
|
10 |
- pick a URL (whine whine whine whine whine whine |
11 |
whine whine whine whine whine whine ...........) |
12 |
|
13 |
- mitgcm.org very front page. |
14 |
o too many clicks to get to model manual. |
15 |
make doc link go to mitgcm.org/r2_web_testing/latest |
16 |
and add "HowTo" reference etc... to /latest page |
17 |
|
18 |
- mitgcm.org/r2_web_testing/latest |
19 |
o add another short-cut for quick download |
20 |
|
21 |
o add another short-cut |
22 |
About |
23 |
Installation |
24 |
Contents |
25 |
Overview |
26 |
Tutorials (broken) |
27 |
Browse Code |
28 |
Get Code (where does this go to?) |
29 |
|
30 |
o authors |
31 |
John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen, |
32 |
Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos, |
33 |
Gael - others? |
34 |
|
35 |
o Tutorials side bar link is broken |
36 |
|
37 |
o words |
38 |
change to "access on-line Auser manual/A and Atable of contents/A |
39 |
and browse the Aoverview section/A" |
40 |
|
41 |
o finite-volume doesn't leap to FV figure |
42 |
|
43 |
o the src and equation links don't come through to |
44 |
the html when they are in figures - see chapter 2 for some |
45 |
examples. |
46 |
|
47 |
o degree symbols keep getting "dropped down" - problem with |
48 |
pnmcrop et al. |
49 |
|
50 |
|
51 |
Contents |
52 |
|
53 |
Intro - CNH |
54 |
o single kernel diagram - |
55 |
add reference to MWR paper |
56 |
|
57 |
o non-hydro |
58 |
add reference to 1995 and 1999 papers |
59 |
pdf of 1995 paper |
60 |
|
61 |
o FV |
62 |
add references to 1997 papers. |
63 |
|
64 |
o Tangent linear/adjoint add reference to |
65 |
Heimbach papers, Marotzke, 1998 ECMWF, Bugi etc... |
66 |
|
67 |
o platforms |
68 |
Add reference to SC article and Scientific Programming article |
69 |
|
70 |
o List of key papers needs to be updated and reformatted |
71 |
|
72 |
|
73 |
o Global atmosphere: `Held Suarez', |
74 |
update Adcroft reference |
75 |
fix up ingrid link and frame (ingrid movies seem to be broken?) |
76 |
Held and Suarez reference is not a link. |
77 |
|
78 |
o Ocean Gyres |
79 |
fix up frame link |
80 |
make "lopped cell" a link to referenced paper. |
81 |
add references (ask Steph/Mick) |
82 |
online/offline paper |
83 |
|
84 |
o Convection and mixing over topography |
85 |
add in Legg references for convection and mixing over topography |
86 |
and external link to CPT-GCE etc... |
87 |
|
88 |
o Boundary forced internal waves |
89 |
add in Legg references, obc's reference |
90 |
|
91 |
o Parameter sensitivity |
92 |
add in Bugnion references, Boyin references, Steph references |
93 |
|
94 |
o State estimation |
95 |
add in references from Patrick/Carl/Ichiro/Detlef etc... |
96 |
update links to point to latest ECCO results |
97 |
ECCO ingrid results have been moved |
98 |
add forward links to "ECCO state estimation" chapter in manual |
99 |
|
100 |
o Ocean biogeochemical cycles |
101 |
add in references from Mick/Galen etc... |
102 |
fix ingrid link ( date to date thing does not appear to work) |
103 |
figure url does not have a "target=idontexist" entry |
104 |
|
105 |
o Simulations of laboratory experiments |
106 |
reference Wardle and Karsten papers |
107 |
update links to include DDDAS "PIAB" page |
108 |
cylindrical polar coordinates |
109 |
|
110 |
o Continuos equations in ''r'' coordinates |
111 |
add references to iso paper |
112 |
no mention of z* and p* - forward reference to z*/p* in 2. |
113 |
add that coupling also manifests through F, Q |
114 |
add tracer transport |
115 |
|
116 |
o Kinematic boundary conditions |
117 |
|
118 |
o Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic and Non-hydrostatic forms |
119 |
need to tidy up discussion of shallow-atmosphere to be |
120 |
consistent with the code or change code to be consistent |
121 |
with the discussion! |
122 |
make references hyperlinks |
123 |
add stuff too |
124 |
|
125 |
o Finding the pressure field |
126 |
make references hyperlinks |
127 |
add forward references to manual algorithm section |
128 |
change Elliptic to "elliptic" |
129 |
|
130 |
o Forcing and dissipation |
131 |
make "physics packages" refer to chapter 6. |
132 |
should we move "external forcing" et. al to a |
133 |
generic_forcing_driver package? |
134 |
|
135 |
viscosities |
136 |
update to mention Smag/Leith (Ah and A4 not constant) |
137 |
and to have forward references to numerical section |
138 |
tracers |
139 |
forward references to numerical section, reddy, GM etc... |
140 |
add references to literature |
141 |
|
142 |
o 1.3.8 Vector invariant form |
143 |
forward references to numerical section |
144 |
|
145 |
o 1.3.9 Adjoint |
146 |
add a little more here + some hyperlink to chapter 5. |
147 |
|
148 |
o 1.4 Appendix ATMOSPHERE |
149 |
|
150 |
add some introductory words |
151 |
|
152 |
o 1.6 Coordinate systems |
153 |
o only has some words on spherical polar. add some brief words |
154 |
to cover all of |
155 |
- cartesian |
156 |
- spherical |
157 |
- cylindrical |
158 |
- general orthogonal curvilinear (vector invariant) |
159 |
|
160 |
o Equation of state options |
161 |
add some discussion |
162 |
can't remember what we said we were going to do here |
163 |
PH to do something |
164 |
|
165 |
|
166 |
Discretization and alg - JMC+CNH |
167 |
|
168 |
Tutorials - AM |
169 |
3.1 "Where to find" |
170 |
o link to Pelican not needed |
171 |
o mailman twice (why?) |
172 |
o no htdig (gone? - I liked it) |
173 |
|
174 |
intro part |
175 |
individual experiments |
176 |
|
177 |
offline - duplicate inputs, what is it, tidy up cfc v. |
178 |
other offline. |
179 |
|
180 |
Software - EH to review |
181 |
|
182 |
some to be done on resource estimates at the end - needs sorting. |
183 |
|
184 |
Automatic Diff - CE |
185 |
|
186 |
Physical Packages - ??? |
187 |
|
188 |
Diags and tools - ??? |
189 |
|
190 |
Interface with ECCO - ??? |
191 |
|
192 |
Model uses - ??? |
193 |
|
194 |
Building document - ??? |
195 |
via cron |
196 |
tweaking latex2html etc.. |
197 |
|
198 |
Src Code tree (rename |
199 |
examples etc..) - ??? |
200 |
|
201 |
Documentation |
202 |
|
203 |
1. Introduction |
204 |
|
205 |
2. Discretization and Algorithm |
206 |
|
207 |
2.13.5 Lateral dissipation |
208 |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
209 |
in code need to explain why cos()3/2 turns out to be |
210 |
scaling (not cos()2) |
211 |
|
212 |
2.13.6 Vertical dissipation |
213 |
o update to have reference to Baylors section |
214 |
reference to implicit discussion in time-stepping part of manual |
215 |
|
216 |
|
217 |
|
218 |
3. Tutorials |
219 |
reorg'd into |
220 |
intro part |
221 |
individual experiments |
222 |
|
223 |
4. Software Architecture |
224 |
|
225 |
5. Automatic Differentiation |
226 |
|
227 |
6. Physical Parameterization and Packages |
228 |
|
229 |
7. Diagnostics and tools |
230 |
|
231 |
8. Interface with ECCO |
232 |
|
233 |
9. Model uses |
234 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
235 |
(check in support for more names) |
236 |
|
237 |
Need an empty package as part of distribution |
238 |
|
239 |
latex2html equation formatting is still a bit weird in places. Need to have another go if we have a chance - especially the degree symbol seems to jump around somewhat! |
240 |
|
241 |
Chapter 1 |
242 |
|
243 |
Change hydrodynamical to "dynamical" |
244 |
|
245 |
Examples |
246 |
|
247 |
- extra "in action" cases |
248 |
|
249 |
o high res ocean with diurnal atmospheric state forcing |
250 |
- links to ingrid output |
251 |
CNH/Dimitris |
252 |
|
253 |
o realistic FIZHI from Andrea |
254 |
- links to ingrid output |
255 |
from AM |
256 |
|
257 |
o with seaice on high res cube |
258 |
- links to ingrid output |
259 |
CNH/Dimitris |
260 |
|
261 |
o coupled aqua, ridge world etc... |
262 |
- links to ingrid output |
263 |
get stuff from Daniel |
264 |
|
265 |
o constrained lab simulation |
266 |
- links to ingrid output for model and lab |
267 |
fields |
268 |
get stuff from Sai/Andrew |
269 |
|
270 |
o sensitivity wrt to iron |
271 |
|
272 |
o optimization |
273 |
- update to link to latest ECCO sites and GF |
274 |
related material |
275 |
|
276 |
o eddy diffusivity transport application |
277 |
|
278 |
o Gas giant? |
279 |
|
280 |
Chapter 6 |
281 |
|
282 |
the master package diagram does not appear in the document |
283 |
|
284 |
pkg/ptracers doesn't seem to have any documentation (see packages list below) |
285 |
|
286 |
|
287 |
|
288 |
2.10.5 Horizontal grid |
289 |
|
290 |
need to do a better job of relating model variables to this diagram |
291 |
|
292 |
|
293 |
Master list of packages |
294 |
|
295 |
admtlm/ - autodiff (chapter 5) |
296 |
aim/ - 6.4.1 (content needs fixing - JM to do) |
297 |
aim_compon_interf/ - 6.6 (no content yet) |
298 |
aim_ocn_coupler/ - 6.6 (no content yet) |
299 |
aim_v23/ - retired |
300 |
atm_common/ - 6.6 (no content yet) |
301 |
autodiff/ - autodiff (chapter 5) |
302 |
bulk_force/ - 6.3.3 |
303 |
cal/ - 6.3.5 |
304 |
cd_code/ - chapter 2 (JM check) |
305 |
cfc/ - not sure |
306 |
chronos/ - AM to check |
307 |
compon_communic/ - 6.6 (no content yet) |
308 |
cost/ - not sure, check with PH |
309 |
ctrl/ - not sure, check with PH |
310 |
debug/ - JM may do something in chapter 7 (utilities) |
311 |
diagnostics/ - 7.1 |
312 |
dic/ - 6.7.2 |
313 |
ebm/ - not sure |
314 |
ecco/ - chapter 8 |
315 |
embed_files/ - add something to chapter 7 |
316 |
ex3/ - rename to exch3 |
317 |
exch2/ - 6.2.2 |
318 |
exf/ - 6.3.4 |
319 |
fizhi/ - 6.4.3 |
320 |
flt/ - in chapter 2 (JM check) |
321 |
gchem/ - 6.7.1 |
322 |
generic_advdiff/ - in chapter 2 (JM check) |
323 |
ggl90/ - nothing, (Martin?) |
324 |
gmredi/ - in chapter 2 (JM check). also need |
325 |
Ferrari & Mc tapering |
326 |
grdchk/ - grdchk (chapter 5 - check with PH) |
327 |
gridalt/ - 6.2.4 |
328 |
kpp/ - 6.3.2 |
329 |
land/ - 6.4.2 (not connected to code - JM to fix) |
330 |
matrix/ - Samar |
331 |
mdsio/ - 7.3.1 |
332 |
mnc/ - 7.2.1 |
333 |
mom_common/ - in chapter 2 (JM check) |
334 |
mom_fluxform/ - in chapter 2 (JM check) |
335 |
mom_vecinv/ - in chapter 2 (JM check) |
336 |
monitor/ - 7.4 |
337 |
my82/ - nothing, (martin?) |
338 |
obcs/ - 6.3 (needs a check) |
339 |
ocn_compon_interf/ - 6.6 (no content yet) |
340 |
offline/ - nothing, tutorials that need work but no package section entry |
341 |
opps/ - nothing, (martin?) |
342 |
pp81/ - nothing, (martin?) |
343 |
profiles/ - GAEL |
344 |
ptracers/ - JM + SD to write something |
345 |
rbcs/ - talk to steph |
346 |
runclock/ - runclock |
347 |
rw/ - not sure |
348 |
sbo/ - text in sbo_descruption.tex but not linked into |
349 |
part6 |
350 |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
351 |
shap_filt/ - chapter 2, JM to check |
352 |
shelfice/ - nothing yet (martin?) |
353 |
solver/ - empty |
354 |
sphere/ - chapter 5 or 8 (PH to check) |
355 |
therm_seaice/ - empty |
356 |
thsice/ - 6.5.1 (JM to update?) |
357 |
timeave/ - retiring...... |
358 |
zonal_filt/ - chapter 2 (JM to check) |
359 |
|
360 |
Possible for chap 7 - Daniels grafix/ stuff |
361 |
|
362 |
Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
363 |
|
364 |
Figure 6.8 is missing |
365 |
|
366 |
|
367 |
>>>> From Ed |
368 |
|
369 |
Here are the remaining bits for Chap 4 : |
370 |
|
371 |
- The grammar/flow could still use some work. Boo was an English |
372 |
major and has experience editing/proofing technical papers. I |
373 |
could print out a copy and ask her to read it and suggest |
374 |
improvements. |
375 |
|
376 |
- missing references (if you point me towards URLs, I'll add them |
377 |
to the bibliography): |
378 |
\ref{ref hoe and hill, ecmwf} |
379 |
\ref{magicgarden} |
380 |
\ref{IBMLAPI} |
381 |
\ref{Memorychannel} |
382 |
\ref{hoe-hill:99} |
383 |
|
384 |
- There are a few empty sub-sections at the end of Chap 4 that |
385 |
should either be commented out or fleshed out. |
386 |
|
387 |
and thats about it for Chap 4. |
388 |
|
389 |
|
390 |
Add more to quick links on front page |
391 |
|
392 |
|
393 |
>>>> From Andrea |
394 |
|
395 |
to do list for chap 7: |
396 |
|
397 |
|
398 |
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
399 |
the links are pointing to the proper place |
400 |
|
401 |
7.5.1 - add Graphix to the list of stuff in utils/matlab |
402 |
7.5.2 - empty |
403 |
|
404 |
|
405 |
andrea |
406 |
|
407 |
>>>> From Andrea |
408 |
|
409 |
Chapter 3 |
410 |
-------- |
411 |
|
412 |
Almost all of the 'math mode' text is dropped down as subscripts |
413 |
|
414 |
divide chapter 3 more clearly into 2 sections? |
415 |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
416 |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
417 |
|
418 |
3.1 - don't need a link to the outside of the document (remove it) |
419 |
- link to htdig is broken |
420 |
|
421 |
3.2.1 - link at bottom to source code points to section 3.2.1 |
422 |
(ie, to itself) - link should point to cvs code archive |
423 |
|
424 |
3.2.2.1 - ('upgrading from an earlier version') belongs under |
425 |
the cvs part, ie, should be 3.2.1.1 |
426 |
|
427 |
3.3 - remove reference to 'diags' section under MITgcm |
428 |
- remove reference to 'exe' and 'bin' sections also |
429 |
(remove the .cvsignore file under these directories in cvs) |
430 |
- add a 'jobs' section, and a description as examples of run scripts |
431 |
- add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions |
432 |
- under 'tools' add a reference to 'build_options'. refer to the 'optfiles' |
433 |
- under 'tools' the adjoint points to section 5 - this is now section 8 |
434 |
(but should be a floating reference) |
435 |
- under 'utils' add a reference to exch2 - stuff for different resolutions |
436 |
- the description of the pkg section refers directly to |
437 |
section 3. should be section 6 (actually should be a floating reference) |
438 |
|
439 |
3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) |
440 |
3.4.1 - links to the following experiments don't exist or are broken: |
441 |
exp2 - should link to section 3.9 |
442 |
hs94.cs-32x32x5 - link to section 3.12 |
443 |
add 'convection' to the list, link to section 3.13 |
444 |
add 'plume on slope` to the list, link to section 3.14 |
445 |
add '??' link to section 3.15 |
446 |
add 'dic_example on slope` to the list, link to section 3.16 |
447 |
add '??' link to section 3.17 |
448 |
add 'offline' and link to section 3.18 |
449 |
clean up others and make links where they are needed |
450 |
3.4.2 - text suggests to see section 2 for details about what is in the 'code' |
451 |
and 'input' directories - should refer to the examples in this section |
452 |
- add 'build' bullet - this is where the model is compiled and exectuable lives |
453 |
|
454 |
3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options |
455 |
as the place where they live (add a link?) |
456 |
|
457 |
3.6.1 - Add some general 'approach' text - ie, output is controlled either by the |
458 |
'data' file in the input directory or by the data.[pkg name] file for any |
459 |
package running. And there is some default behavior when the 'state' dumps |
460 |
are written. |
461 |
3.6.1.2 - needs to be moved to inside section 3.6.2 |
462 |
|
463 |
3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18) |
464 |
underneath this one and leave the text for 3.7 in place |
465 |
|
466 |
All the 'overview' sections need some reference to the name of the experiment in |
467 |
the verification directory |
468 |
|
469 |
3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript |
470 |
- is this experiment in the list from section 3.4??? |
471 |
3.10.3.1 - refers to figures and equations, links are broken |
472 |
|
473 |
3.11.3.2 - line 43: link to equation is broken |
474 |
- line 51-53: link to equation is broken |
475 |
- there is some mess of text hanging around the end of this section. remove? reformat? |
476 |
|
477 |
3.12.4.1 - line 34 - link to equation is broken |
478 |
- lines 60,61 - 1st (take out the 'r' in the superscript) |
479 |
|
480 |
3.13.2 - link to theta-equation is broken |
481 |
3.13.5.4 -- ALL of the bold links to variable names are broken |
482 |
line 34: link to equation is broken |
483 |
|
484 |
3.15.1 - reference to 'fourth experiment' should be removed |
485 |
|
486 |
3.16.4 - strange formatting, presence of '>' symbols - remove them |
487 |
|
488 |
3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 |
489 |
3.17.3.1 - nothing filled in under file input/data - needs description |
490 |
|
491 |
3.18.2 - point to section 2 for details - need hyperlink |
492 |
|
493 |
3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! |
494 |
section 3.5 has the 'build' directory in the example |
495 |
|
496 |
3.20.1 - link to doc at end of section points to this section |
497 |
3.20.2 - link to doc at end of section points to this section |
498 |
|
499 |
>>>> from JM |
500 |
|
501 |
|
502 |
|
503 |
manual, section.2 : |
504 |
|
505 |
In general: |
506 |
- add more refences/links to S/R & variable name |
507 |
- would be nice to have an active link to the fortran-file |
508 |
for all the S/R & eq.Number in the "calling-tree" boxes |
509 |
- search for CALC_MOM_RHS and replace it by the appropriate S/R |
510 |
(mom_flux_form, mom_vecinv, dynamics) |
511 |
- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
512 |
was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
513 |
in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
514 |
simply written \vec{v}. |
515 |
I would suggest to keep the notation as they are (since they are consistent |
516 |
inside each section) but may be to move the "notation.tex" piece |
517 |
at the beginning of section.2 and to mention clearly the changes between |
518 |
the 2 sections. |
519 |
|
520 |
in content: Horizontal Dissipation: 2 times in vector-invariant section |
521 |
|
522 |
2.1 time-stepping (part2/time_stepping.tex) |
523 |
|
524 |
- this is not clear to me: |
525 |
|
526 |
>> In all the above configurations it is also possible to substitute the |
527 |
>> Adams-Bashforth with an alternative time-stepping scheme for terms |
528 |
>> evaluated explicitly in time |
529 |
|
530 |
|
531 |
2.2 rigid-lid: |
532 |
|
533 |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
534 |
to stay closer to the code. |
535 |
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) |
536 |
|
537 |
2.3 linear free-surface: |
538 |
- add ref(+link) to S/R names: |
539 |
- add ref(+link) to Crank-Nickelson section 2.9.1 |
540 |
|
541 |
2.4 Adams-Bashforth |
542 |
- add stability diagrams (I have some figures that I can put) |
543 |
- add link for var. forcing_In_AB |
544 |
- add S/R link for S/R ADAMS_BASHFORTH2 |
545 |
|
546 |
2.5 Implicit time-stepping |
547 |
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
548 |
SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL |
549 |
- update: also used for vertical advection |
550 |
|
551 |
2.6 Synchronous time-stepping: |
552 |
- add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE, |
553 |
MOMENTUM_CORRECTION_STEP. |
554 |
|
555 |
2.7 Stagger baroclinic time-stepping |
556 |
- mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end |
557 |
|
558 |
2.8 NH |
559 |
- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
560 |
|
561 |
2.9 Variants on Free-Surface |
562 |
- Delta.t mis-written (eq.2.73) |
563 |
- Eq.Num missing (has been fixed since) |
564 |
- u* is stored in gU (and not in gUnm1) |
565 |
- Phi_nh in NH_VARS.h |
566 |
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
567 |
INI_CG2D, INI_CG3D |
568 |
|
569 |
2.9.1 Crank-Nickelson |
570 |
- link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater |
571 |
|
572 |
2.9.2 NLFS |
573 |
- eq.Nb are wrong in html |
574 |
- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
575 |
|
576 |
2.10.1 Notation |
577 |
- Area definition is not really used like this |
578 |
|
579 |
>> Ao : Area of the face orthogonal to "o" direction (o=u,v,w) |
580 |
|
581 |
Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
582 |
the model variables) are used (e.g., see section 2.10.5) |
583 |
|
584 |
2.10.5 Horizontal grid: |
585 |
- fig.2.8 : should use Aw,As consistently in this figure description, |
586 |
in the figure itself, as it is in the text. |
587 |
- curvilinear: |
588 |
to add: mention the angle of the grid direction relative to |
589 |
Eastward, Northward direction. |
590 |
+ mention horizGridFile= in file "data" (PARM04) |
591 |
- add cylindrical grid description |
592 |
|
593 |
2.11 Continuity & Horizontal Pressure gradient terms |
594 |
- mention that d.Phi/dr|s =g if using z coordinate |
595 |
- eq. 2.90 not clear regarding \delta_k(P-E) |
596 |
better to add the free surface eq: d.eta/dt = w_s + P-E |
597 |
|
598 |
2.12 Hydrostatic balance |
599 |
- add ref to Atmosphere Appendix section (1.4) since Adcroft 2002 |
600 |
is hard to find |
601 |
- add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H) |
602 |
and in section 1.3.4: remove the 1.3.4.3.2 subsection: |
603 |
Quasi-nonhydrostatic Atmosphere |
604 |
|
605 |
2.13.2 Coriolis terms |
606 |
- note: the discretization used when useEnergyConservingCoriolis=T |
607 |
has no hFac and no Area and is still different from the form |
608 |
described here (with Area & hFac); |
609 |
|
610 |
2.13.5 Lateral dissipation |
611 |
- add description of how to use cosFactor & cosPower |
612 |
- add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4 |
613 |
|
614 |
2.13.6 Vertical dissipation |
615 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
616 |
- add the parameter correspondence: Av <-> viscAr (and might change also |
617 |
the notation to Ar) |
618 |
|
619 |
2.14 Vector invariant momentum equations |
620 |
- indicate that the NH pieces (vertical momentum eq) are not yet coded |
621 |
and that the NH code uses the flux form. |
622 |
|
623 |
2.14.6 Horizontal dissipation -> Horizontal Divergence |
624 |
|
625 |
2.14.7 Horizontal dissipation |
626 |
- add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ |
627 |
and A_D4,A_z4 <-> viscA4D,viscA4Z |
628 |
|
629 |
2.16 & 2.17 & 2.18 : |
630 |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
631 |
|
632 |
2.20.2 mercator, non-dimensional Equations: |
633 |
- does not use std notation |
634 |
- would be better as an appendix of section 2.20: |
635 |
(e.g changing the tile to: |
636 |
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
637 |
|
638 |
JM |
639 |
|