--- manual/manual_todo.txt	2006/06/28 19:03:11	1.43
+++ manual/manual_todo.txt	2006/07/02 18:12:45	1.46
@@ -26,6 +26,7 @@
 
  Biblio        - EH3
 
+
 Rebuild and set to do cron build - DONE on hugo
 
 To do
@@ -42,31 +43,40 @@
 
 o HTML, scripts and front content
 
-  - pick a URL
-    TBD
+  - pick a URL:  mitgcm.org/r2  <-- EH3's preferred base URL
 
   - mitgcm.org/r2_web_testing/latest
-    o add another short-cut for quick download
+    
+    o --DONE--  add another short-cut for quick download
+
+    o --DONE--  add another short-cut
+                  About
+                  Installation
+                  Contents
+                  Overview
+                  Tutorials (broken)
+                  Browse Code
+
+    o --DONE--  words on http://mitgcm.org/r2_web_testing/latest change to 
+
+    o --DONE--  finite-volume doesn't leap to FV figure
 
-    o add another short-cut
-      About
-      Installation
-      Contents
-      Overview
-      Tutorials (broken)
-      Browse Code
-
-    o words on http://mitgcm.org/r2_web_testing/latest
-      change to 
-       "access on-line Auser manual/A and Atable of contents/A
-        and browse the Aoverview section/A"
+    o -- DONE ??? --  have another go at pnmcrop et al.
 
-    o finite-volume doesn't leap to FV figure
+         I've tried making a small change in latex2html which fixes
+         the oddball-lower-alignment issue that we were seeing with
+         most in-line expressions (that is, math embedded in text).
+         The fix results in some things being slightly raised but I
+         thin this is more asthetically pleasing than being somewhat
+         lowered as before. --EH3
 
-    o have another go at pnmcrop et al.
+	 To view the altered alignment, see:
+
+            http://eddy.csail.mit.edu/r2/latest/
 
     o Need an empty package as part of distribution. Check out atm_common
 
+
 o Latex   
 
     Chapter 1                 - CNH
@@ -260,16 +270,16 @@
 
 - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)"
   to stay closer to the code.
-- mention section 2.5 implicit-Time-stepping (for vertical viscosity)
+- mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE
 
 2.3 linear free-surface: 
 - add ref(+link) to S/R names:
-- add ref(+link) to Crank-Nickelson section 2.9.1
+- add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE
 
 2.4 Adams-Bashforth
-- add stability diagrams (I have some figures that I can put)
-- add link for var. forcing_In_AB
-- add S/R link for S/R ADAMS_BASHFORTH2
+- add stability diagrams (I have some figures that I can put) <- DONE
+- add link for var. forcing_In_AB and epsil_AB <- half DONE
+- add S/R link for S/R ADAMS_BASHFORTH2 <-DONE
 
 2.5 Implicit time-stepping 
 - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R
@@ -508,16 +518,18 @@
 
 =====  Chapter 7  =====  [EH3 editing] :
 
-7.1.x - JMC: please add description of:
+ + JMC: please add description of:
 	- diagstat
 	- new temporal averaging feature
 
-7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel)
+ + add Graphix to the list of stuff in utils/matlab (Daniel)
+
+ + get bathymetry pre-processing stuff from Patrick and then describe it
 
-7.5.2 - get bathymetry pre-processing stuff from Patrick
-        and then describe it
+ + add something on spgrid mesh generator
 
-add something on spgrid mesh generator (maybe)?
+ + add in gmaze PV calculation scripts plus write up on how it is calculated
+     http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/
 
 
 andrea