/[MITgcm]/manual/manual_todo.txt

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-revision 1.45 by cnh,
Thu Jun 29 17:45:14 2006 UTC
+revision 1.49 by jmc,
Thu Jan 17 16:45:29 2008 UTC
 Line 26 
 Editors
   Biblio        - EH3
  Rebuild and set to do cron build - DONE on hugo
  To do
-Line 42 
 To do
+Line 43 
 To do
  o HTML, scripts and front content
-   - pick a URL
+   - pick a URL:  mitgcm.org/r2  <-- EH3's preferred base URL
-     TBD
    - mitgcm.org/r2_web_testing/latest
-     o add another short-cut for quick download
+     o --DONE--  add another short-cut for quick download
+     o --DONE--  add another short-cut
+                   About
+                   Installation
+                   Contents
+                   Overview
+                   Tutorials (broken)
+                   Browse Code
+     o --DONE--  words on http://mitgcm.org/r2_web_testing/latest change to
+     o --DONE--  finite-volume doesn't leap to FV figure
+     o -- DONE ??? --  have another go at pnmcrop et al.
-     o add another short-cut
+          I've tried making a small change in latex2html which fixes
-       About
+          the oddball-lower-alignment issue that we were seeing with
-       Installation
+          most in-line expressions (that is, math embedded in text).
-       Contents
+          The fix results in some things being slightly raised but I
-       Overview
+          thin this is more asthetically pleasing than being somewhat
-       Tutorials (broken)
+          lowered as before. --EH3
-       Browse Code
-     o words on http://mitgcm.org/r2_web_testing/latest
-       change to
-        "access on-line Auser manual/A and Atable of contents/A
-         and browse the Aoverview section/A"
-     o finite-volume doesn't leap to FV figure
+          To view the altered alignment, see:
-     o have another go at pnmcrop et al.
+             http://eddy.csail.mit.edu/r2/latest/
      o Need an empty package as part of distribution. Check out atm_common
  o Latex
      Chapter 1                 - CNH
-Line 255 
 in content: Horizontal Dissipation: 2 ti
+Line 265 
 in content: Horizontal Dissipation: 2 ti
  >> evaluated explicitly in time
  <- Leave it general.
+  o Time-stepping outline
+    - what gets called when
 .2 rigid-lid:
-Line 404 
 Almost all of the 'math mode' text is dr
+Line 417 
 Almost all of the 'math mode' text is dr
 .14.5.4 -- ALL of the bold links to variable names are broken
              line 34: link to equation is broken
+  o Update basic intro with one and four layer gyres
+    - include advection options
+    - conservation analysis
+    - diagnostics
+  o Four degree adjoint
+    - both TAF and OpenAD based.
+  o Coupled with biogeo setup
+    - based on CCGS setup
  >>>> From Ed
  Here are the remaining bits for Chap 4 :
-Line 426 
 Add more to quick links on front page
+Line 451 
 Add more to quick links on front page
  Chapter 6
-    the master package diagram does not appear in the document
+    the master package diagram does not appear in the document <- done
+  (<- needs an update: e.g. atm2d, salt_plume, shelfice ...)
  Master list of packages (add this to beginning of chap 6)
+  (<- needs an update: e.g. atm2d, salt_plume, shelfice ...)
  admtlm/               - autodiff (chapter 5)
  aim/                  - retired
-Line 455 
 embed_files/          - add something to
+Line 482 
 embed_files/          - add something to
  exch2/                - 6.2.2
  exf/                  - 6.3.4
  fizhi/                - 6.4.3
+  o Including FIZHI doc
+    - get things up to date
  flt/                  - (PH check)
  gchem/                - 6.7.1
  generic_advdiff/      - in chapter 2 (JM check)
-Line 500 
 thsice/               - 6.5.1 (JM to upd
+Line 529 
 thsice/               - 6.5.1 (JM to upd
  timeave/              - retiring......
  zonal_filt/           - chapter 2 (JM to check)
+  o Cost function packages
+    - floats, weights, profiles etc...
  list an expeiment which uses package? CNH
 .3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997
-Line 508 
 list an expeiment which uses package? CN
+Line 541 
 list an expeiment which uses package? CN
  =====  Chapter 7  =====  [EH3 editing] :
-.1.x - JMC: please add description of:
+  + JMC: please add description of:
          - diagstat
          - new temporal averaging feature
-.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel)
+  + update the RW / MDSIO description
+    -> new meta file
+    -> list all RW S/R that one should use instead of calling directly MDSIO
+  + add Graphix to the list of stuff in utils/matlab (Daniel)
+  + get bathymetry pre-processing stuff from Patrick and then describe it
-.5.2 - get bathymetry pre-processing stuff from Patrick
+  + add something on spgrid mesh generator
-         and then describe it
+  o Grid generation
+    - more explanation and some step-by-step examples
+    - plotting grid examples
- add something on spgrid mesh generator (maybe)?
- add in gmaze PV calculation scripts plus write up on how it is calculated
+  + add in gmaze PV calculation scripts plus write up on how it is calculated
- http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/
+      http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/
  andrea
-Line 533 
 andrea
+Line 573 
 andrea
 . Under development
  Constantinos LCML
+  o Legend/LCML examples and explanation
+    - examples and explanation!
  Bibliography
   tidy up from misc - .tex
+ Also
+ a link to the new manual
+ should appear on the front page (even if it's under construction).
+ updating:
+ http://mitgcm.org/r2_web_testing/latest/code_reference/callTree.html
+ which points to a 1.5 years old code. Would be good to generate a
+ new one, and even better, to try to keep it up-to-date.

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