| 260 |  |  | 
| 261 | - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" | - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" | 
| 262 | to stay closer to the code. | to stay closer to the code. | 
| 263 | - mention section 2.5 implicit-Time-stepping (for vertical viscosity) | - mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE | 
| 264 |  |  | 
| 265 | 2.3 linear free-surface: | 2.3 linear free-surface: | 
| 266 | - add ref(+link) to S/R names: | - add ref(+link) to S/R names: | 
| 267 | - add ref(+link) to Crank-Nickelson section 2.9.1 | - add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE | 
| 268 |  |  | 
| 269 | 2.4 Adams-Bashforth | 2.4 Adams-Bashforth | 
| 270 | - add stability diagrams (I have some figures that I can put) | - add stability diagrams (I have some figures that I can put) <- DONE | 
| 271 | - add link for var. forcing_In_AB | - add link for var. forcing_In_AB and epsil_AB <- half DONE | 
| 272 | - add S/R link for S/R ADAMS_BASHFORTH2 | - add S/R link for S/R ADAMS_BASHFORTH2 <-DONE | 
| 273 |  |  | 
| 274 | 2.5 Implicit time-stepping | 2.5 Implicit time-stepping | 
| 275 | - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R | - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R | 
| 391 |  |  | 
| 392 | Almost all of the 'math mode' text is dropped down as subscripts | Almost all of the 'math mode' text is dropped down as subscripts | 
| 393 |  |  | 
| 394 | 3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript | 3.11.3.1 - refers to figures and equations, links are broken | 
|  | - is this experiment in the list from section 3.4??? |  | 
|  | 3.10.3.1 - refers to figures and equations, links are broken |  | 
| 395 |  |  | 
| 396 | 3.11.3.2 - line 43: link to equation is broken | 3.12.3.2 - line 43: link to equation is broken | 
| 397 | - line 51-53: link to equation is broken | - line 51-53: link to equation is broken | 
| 398 | - there is some mess of text hanging around the end of this section. remove? reformat? | - there is some mess of text hanging around the end of this section. remove? reformat? | 
| 399 |  |  | 
| 400 | 3.12.4.1 - line 34 - link to equation is broken | 3.13.4.1 - line 34 - link to equation is broken | 
| 401 | - lines 60,61 - 1st (take out the 'r' in the superscript) | - lines 60,61 - 1st (take out the 'r' in the superscript) | 
| 402 |  |  | 
| 403 | 3.13.2 - link to theta-equation is broken | 3.14.2 - link to theta-equation is broken | 
| 404 | 3.13.5.4 -- ALL of the bold links to variable names are broken | 3.14.5.4 -- ALL of the bold links to variable names are broken | 
| 405 | line 34: link to equation is broken | line 34: link to equation is broken | 
| 406 |  |  | 
|  | 3.15.1 - reference to 'fourth experiment' should be removed |  | 
|  |  |  | 
|  | 3.16.4 - strange formatting, presence of '>' symbols - remove them |  | 
|  |  |  | 
|  | 3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 |  | 
|  | 3.17.3.1 - nothing filled in under file input/data - needs description |  | 
|  |  |  | 
|  | 3.18.2 - point to section 2 for details - need hyperlink |  | 
|  |  |  | 
|  | 3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! |  | 
|  | section 3.5 has the 'build' directory in the example |  | 
|  |  |  | 
|  | 3.20.1 - link to doc at end of section points to this section |  | 
|  | 3.20.2 - link to doc at end of section points to this section |  | 
|  |  |  | 
|  | offline - duplicate inputs, what is it, tidy up cfc v. |  | 
|  | other offline. JM thinks these need tidying up. |  | 
|  |  |  | 
|  | Which of the following are which tutorial? |  | 
|  | adjustment.128x64x1 |  | 
|  | adjustment.cs-32x32x1 |  | 
|  | advect_cs |  | 
|  | advect_xy |  | 
|  | advect_xz |  | 
|  | aim.5l_cs |  | 
|  | aim.5l_Equatorial_Channel |  | 
|  | aim.5l_LatLon |  | 
|  | biogeo |  | 
|  | bottom_ctrl_5x5 |  | 
|  | cfc_example |  | 
|  | cpl_aim+ocn |  | 
|  | dome |  | 
|  | exp2 |  | 
|  | exp4 |  | 
|  | exp5 |  | 
|  | fizhi-cs-32x32x10 |  | 
|  | fizhi-cs-aqualev20 |  | 
|  | fizhi-gridalt-hs |  | 
|  | flt_example |  | 
|  | front_relax |  | 
|  | global1x1_tot |  | 
|  | global2x2_tot |  | 
|  | global_ocean.90x40x15 |  | 
|  | global_ocean.cs32x15 |  | 
|  | global_ocean.cubed32x32x30 |  | 
|  | global_ocean_ebm |  | 
|  | global_with_exf |  | 
|  | hs94.128x64x5 |  | 
|  | hs94.1x64x5 |  | 
|  | hs94.cs-32x32x5 |  | 
|  | ideal_2D_oce |  | 
|  | internal_wave |  | 
|  | inverted_barometer |  | 
|  | lab_sea |  | 
|  | matrix_example |  | 
|  | MLAdjust |  | 
|  | natl_box |  | 
|  | natl_box_adjoint |  | 
|  | OpenAD |  | 
|  | rotating_tank |  | 
|  | solid-body.cs-32x32x1 |  | 
|  | tidal_basin_2d |  | 
|  | tutorial_baroclinic_gyre |  | 
|  | tutorial_barotropic_gyre |  | 
|  | tutorial_cfc_offline |  | 
|  | tutorial_deep_convection |  | 
|  | tutorial_global_oce_biogeo |  | 
|  | tutorial_global_oce_in_p |  | 
|  | tutorial_global_oce_latlon |  | 
|  | tutorial_global_oce_optim |  | 
|  | tutorial_held_suarez_cs |  | 
|  | tutorial_offline |  | 
|  | tutorial_plume_on_slope |  | 
|  | tutorial_tracer_adjsens |  | 
|  | vermix |  | 
|  |  |  | 
| 407 | >>>> From Ed | >>>> From Ed | 
| 408 |  |  | 
| 409 | Here are the remaining bits for Chap 4 : | Here are the remaining bits for Chap 4 : |