14 |
- pick a URL |
- pick a URL |
15 |
TBD |
TBD |
16 |
|
|
|
- mitgcm.org very front page. |
|
|
o too many clicks to get to model manual. |
|
|
make doc link go to mitgcm.org/r2_web_testing/latest |
|
|
and add "HowTo" reference etc... to /latest page |
|
|
|
|
17 |
- mitgcm.org/r2_web_testing/latest |
- mitgcm.org/r2_web_testing/latest |
18 |
o add another short-cut for quick download |
o add another short-cut for quick download |
19 |
|
|
25 |
Tutorials (broken) |
Tutorials (broken) |
26 |
Browse Code |
Browse Code |
27 |
|
|
|
o mitgcm.org (front content) [DONE] |
|
|
Get Code (where does this go to?) |
|
|
get rid of * CVS current bullet |
|
|
make HTML-enabled CVS code browser leap to MITgcm/MITgcm |
|
|
|
|
|
o authors |
|
|
John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen, |
|
|
Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos, |
|
|
Gael - others? |
|
|
|
|
28 |
o words on http://mitgcm.org/r2_web_testing/latest |
o words on http://mitgcm.org/r2_web_testing/latest |
29 |
change to |
change to |
30 |
"access on-line Auser manual/A and Atable of contents/A |
"access on-line Auser manual/A and Atable of contents/A |
283 |
to add: mention the angle of the grid direction relative to |
to add: mention the angle of the grid direction relative to |
284 |
Eastward, Northward direction. |
Eastward, Northward direction. |
285 |
+ mention horizGridFile= in file "data" (PARM04) |
+ mention horizGridFile= in file "data" (PARM04) |
286 |
- add cylindrical grid description |
- add cylindrical polar grid description |
287 |
need to do a better job of relating model variables to this diagram |
need to do a better job of relating model variables to this diagram |
288 |
|
|
289 |
|
|
310 |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
311 |
in code need to explain why cos()3/2 turns out to be |
in code need to explain why cos()3/2 turns out to be |
312 |
scaling (not cos()2) |
scaling (not cos()2) |
313 |
|
- need to reference the smag/leith section. |
314 |
|
|
315 |
2.13.6 Vertical dissipation |
2.13.6 Vertical dissipation |
316 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
329 |
|
|
330 |
2.16 & 2.17 & 2.18 : |
2.16 & 2.17 & 2.18 : |
331 |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
332 |
|
- fix equations 2.202 & 2.203 (thanks to Martin) |
333 |
|
|
334 |
2.20.2 mercator, non-dimensional Equations: |
2.20.2 mercator, non-dimensional Equations: |
335 |
- does not use std notation |
- does not use std notation |
349 |
|
|
350 |
Almost all of the 'math mode' text is dropped down as subscripts |
Almost all of the 'math mode' text is dropped down as subscripts |
351 |
|
|
|
divide chapter 3 more clearly into 2 sections? |
|
|
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
|
|
then 3.19 and 3.20 are informational again - rearrange subsections?) |
|
|
|
|
352 |
3.1 - don't need a link to the outside of the document (remove it) |
3.1 - don't need a link to the outside of the document (remove it) |
353 |
- link to htdig is broken |
- link to htdig is broken |
354 |
|
|
394 |
are written. |
are written. |
395 |
3.6.1.2 - needs to be moved to inside section 3.6.2 |
3.6.1.2 - needs to be moved to inside section 3.6.2 |
396 |
|
|
|
3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18) |
|
|
underneath this one and leave the text for 3.7 in place |
|
|
|
|
397 |
All the 'overview' sections need some reference to the name of the experiment in |
All the 'overview' sections need some reference to the name of the experiment in |
398 |
the verification directory |
the verification directory |
399 |
|
|
429 |
|
|
430 |
offline - duplicate inputs, what is it, tidy up cfc v. |
offline - duplicate inputs, what is it, tidy up cfc v. |
431 |
other offline. JM thinks these need tidying up. |
other offline. JM thinks these need tidying up. |
432 |
|
|
433 |
|
Which of the following are which tutorial? |
434 |
|
adjustment.128x64x1 |
435 |
|
adjustment.cs-32x32x1 |
436 |
|
advect_cs |
437 |
|
advect_xy |
438 |
|
advect_xz |
439 |
|
aim.5l_cs |
440 |
|
aim.5l_Equatorial_Channel |
441 |
|
aim.5l_LatLon |
442 |
|
biogeo |
443 |
|
bottom_ctrl_5x5 |
444 |
|
cfc_example |
445 |
|
cpl_aim+ocn |
446 |
|
dome |
447 |
|
exp2 |
448 |
|
exp4 |
449 |
|
exp5 |
450 |
|
fizhi-cs-32x32x10 |
451 |
|
fizhi-cs-aqualev20 |
452 |
|
fizhi-gridalt-hs |
453 |
|
flt_example |
454 |
|
front_relax |
455 |
|
global1x1_tot |
456 |
|
global2x2_tot |
457 |
|
global_ocean.90x40x15 |
458 |
|
global_ocean.cs32x15 |
459 |
|
global_ocean.cubed32x32x30 |
460 |
|
global_ocean_ebm |
461 |
|
global_with_exf |
462 |
|
hs94.128x64x5 |
463 |
|
hs94.1x64x5 |
464 |
|
hs94.cs-32x32x5 |
465 |
|
ideal_2D_oce |
466 |
|
internal_wave |
467 |
|
inverted_barometer |
468 |
|
lab_sea |
469 |
|
matrix_example |
470 |
|
MLAdjust |
471 |
|
natl_box |
472 |
|
natl_box_adjoint |
473 |
|
OpenAD |
474 |
|
rotating_tank |
475 |
|
solid-body.cs-32x32x1 |
476 |
|
tidal_basin_2d |
477 |
|
tutorial_baroclinic_gyre |
478 |
|
tutorial_barotropic_gyre |
479 |
|
tutorial_cfc_offline |
480 |
|
tutorial_deep_convection |
481 |
|
tutorial_global_oce_biogeo |
482 |
|
tutorial_global_oce_in_p |
483 |
|
tutorial_global_oce_latlon |
484 |
|
tutorial_global_oce_optim |
485 |
|
tutorial_held_suarez_cs |
486 |
|
tutorial_offline |
487 |
|
tutorial_plume_on_slope |
488 |
|
tutorial_tracer_adjsens |
489 |
|
vermix |
490 |
|
|
491 |
>>>> From Ed |
>>>> From Ed |
492 |
|
|
493 |
Here are the remaining bits for Chap 4 : |
Here are the remaining bits for Chap 4 : |
494 |
|
|
|
- The grammar/flow could still use some work. Boo was an English |
|
|
major and has experience editing/proofing technical papers. I |
|
|
could print out a copy and ask her to read it and suggest |
|
|
improvements. |
|
|
|
|
495 |
- missing references (if you point me towards URLs, I'll add them |
- missing references (if you point me towards URLs, I'll add them |
496 |
to the bibliography): |
to the bibliography): |
497 |
\ref{ref hoe and hill, ecmwf} |
\ref{ref hoe and hill, ecmwf} |
512 |
|
|
513 |
the master package diagram does not appear in the document |
the master package diagram does not appear in the document |
514 |
|
|
|
pkg/ptracers doesn't seem to have any documentation (see packages list below) |
|
|
|
|
|
|
|
515 |
Master list of packages (add this to beginning of chap 6) |
Master list of packages (add this to beginning of chap 6) |
516 |
|
|
517 |
admtlm/ - autodiff (chapter 5) |
admtlm/ - autodiff (chapter 5) |
518 |
aim/ - retired |
aim/ - retired |
519 |
aim_compon_interf/ - 6.6 (no content yet) |
aim_compon_interf/ - 6.6 (no content yet)(Daniel + JM) |
520 |
aim_ocn_coupler/ - 6.6 (no content yet) |
aim_ocn_coupler/ - 6.6 (no content yet) |
521 |
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
522 |
atm_common/ - 6.6 (no content yet) |
atm_common/ - nothing in this package (6.4.1 related) |
523 |
autodiff/ - autodiff (chapter 5) |
autodiff/ - autodiff (chapter 5) |
524 |
bulk_force/ - 6.3.3 |
bulk_force/ - 6.3.3 |
525 |
cal/ - 6.3.5 |
cal/ - 6.3.5 |
526 |
cd_code/ - chapter 2 (JM check) |
cd_code/ - chapter 2 (JM check add a reference to paper, |
527 |
cfc/ - not sure |
mention parameter in data) |
528 |
chronos/ - AM to check |
cfc/ - not sure (CNH to talk to Steph and Helen) |
529 |
compon_communic/ - 6.6 (no content yet) |
chronos/ - AM to check (not being used - Andrea to kill it) |
530 |
|
compon_communic/ - 6.6 (no content yet)(Daniel + JM) |
531 |
cost/ - not sure, check with PH |
cost/ - not sure, check with PH |
532 |
ctrl/ - not sure, check with PH |
ctrl/ - not sure, check with PH |
533 |
debug/ - JM may do something in chapter 7 (utilities) |
debug/ - JM may do something in chapter 7 (utilities) |
534 |
diagnostics/ - 7.1 |
diagnostics/ - 7.1 |
535 |
dic/ - 6.7.2 |
dic/ - 6.7.2 |
536 |
ebm/ - not sure |
ebm/ - (check with PH) |
537 |
ecco/ - chapter 8 |
ecco/ - chapter 8 |
538 |
embed_files/ - add something to chapter 7 |
embed_files/ - add something to chapter 7 |
|
ex3/ - rename to exch3 |
|
539 |
exch2/ - 6.2.2 |
exch2/ - 6.2.2 |
540 |
exf/ - 6.3.4 |
exf/ - 6.3.4 |
541 |
fizhi/ - 6.4.3 |
fizhi/ - 6.4.3 |
542 |
flt/ - in chapter 2 (JM check) |
flt/ - (PH check) |
543 |
gchem/ - 6.7.1 |
gchem/ - 6.7.1 |
544 |
generic_advdiff/ - in chapter 2 (JM check) |
generic_advdiff/ - in chapter 2 (JM check) |
545 |
ggl90/ - nothing, (Martin?) |
ggl90/ - nothing, (Martin?) |
546 |
gmredi/ - in chapter 2 (JM check). also need |
gmredi/ - in chapter 2 (JM check). also need |
547 |
Ferrari & Mc tapering |
Ferrari & Mc transition zone stuff (Samar doing this) |
548 |
|
get dfer to read this |
549 |
grdchk/ - grdchk (chapter 5 - check with PH) |
grdchk/ - grdchk (chapter 5 - check with PH) |
550 |
gridalt/ - 6.2.4 |
gridalt/ - 6.2.4 |
551 |
kpp/ - 6.3.2 |
kpp/ - 6.3.2 |
552 |
land/ - 6.4.2 (not connected to code - JM to fix) |
land/ - 6.4.2 (not connected to code Rong's notes - JM to fix) |
553 |
matrix/ - Samar |
matrix/ - Samar |
554 |
mdsio/ - 7.3.1 |
mdsio/ - 7.3.1 |
555 |
mnc/ - 7.2.1 |
mnc/ - 7.2.1 |
558 |
mom_vecinv/ - in chapter 2 (JM check) |
mom_vecinv/ - in chapter 2 (JM check) |
559 |
monitor/ - 7.4 |
monitor/ - 7.4 |
560 |
my82/ - nothing, (martin?) |
my82/ - nothing, (martin?) |
561 |
obcs/ - 6.3 (needs a check) |
obcs/ - 6.3 (needs a check - ask PH to read) |
562 |
ocn_compon_interf/ - 6.6 (no content yet) |
ocn_compon_interf/ - 6.6 (no content yet) |
563 |
offline/ - nothing, tutorials that need work but no package section entry |
offline/ - nothing, tutorials that need work but no package section entry |
564 |
|
trivial to document (CNH to do) |
565 |
opps/ - nothing, (martin?) |
opps/ - nothing, (martin?) |
566 |
pp81/ - nothing, (martin?) |
pp81/ - nothing, (martin?) |
567 |
profiles/ - GAEL |
profiles/ - GAEL |
568 |
ptracers/ - JM + SD to write something |
ptracers/ - JM + SD + Martin to write something (nothing for this |
569 |
rbcs/ - talk to steph |
at the moment) |
570 |
runclock/ - runclock |
AM has diagnostics table for this. |
571 |
rw/ - not sure |
rbcs/ - CNH to talk to steph |
572 |
|
runclock/ - runclock - CNH |
573 |
|
rw/ - not sure - going to stay says JMC. quick IO calls |
574 |
|
JMC to write a quick note for that. |
575 |
sbo/ - text in sbo_descruption.tex but not linked into |
sbo/ - text in sbo_descruption.tex but not linked into |
576 |
part6 |
part6 - CNH |
577 |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
578 |
shap_filt/ - chapter 2, JM to check |
shap_filt/ - chapter 2, JM to check |
579 |
shelfice/ - nothing yet (martin?) |
shelfice/ - nothing yet (martin?) |
580 |
solver/ - empty |
solver/ - empty (go away?) |
581 |
sphere/ - chapter 5 or 8 (PH to check) |
sphere/ - chapter 5 or 8 (PH to check) |
582 |
therm_seaice/ - empty |
therm_seaice/ - empty (go away?) |
583 |
thsice/ - 6.5.1 (JM to update?) |
thsice/ - 6.5.1 (JM to update?) |
584 |
timeave/ - retiring...... |
timeave/ - retiring...... |
585 |
zonal_filt/ - chapter 2 (JM to check) |
zonal_filt/ - chapter 2 (JM to check) |
586 |
|
|
587 |
Possible for chap 7 - Daniels grafix/ stuff |
list an expeiment which uses package? CNH |
|
|
|
|
Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
|
|
|
|
|
Figure 6.8 is missing |
|
588 |
|
|
589 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
590 |
Figure 6.8 is missing |
Figure 6.8 is missing |
591 |
|
|
592 |
|
|
593 |
>>>> From Andrea |
===== Chapter 7 ===== [EH3 editing] : |
|
|
|
|
to do list for chap 7: |
|
594 |
|
|
595 |
|
7.1.1 - links to section 7.1.4: the text of the first |
596 |
7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" |
one should read "see MITgcm Kernel Diagnostics Menu" |
597 |
the links are pointing to the proper place |
the links are pointing to the proper place |
598 |
|
|
599 |
7.5.1 - add Graphix to the list of stuff in utils/matlab |
7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) |
600 |
7.5.2 - empty |
|
601 |
|
7.5.2 - get bathymetry pre-processing stuff from Patrick |
602 |
|
and then describe it |
603 |
|
|
604 |
|
|
605 |
andrea |
andrea |
606 |
|
|
607 |
|
|
608 |
9. Model uses |
9. Publications using MITgcm --> "Previous Applications of MITgcm" |
609 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
610 |
(check in support for more names) |
(check in support for more names) |
611 |
|
|
612 |
|
10. Under development |
613 |
|
|
614 |
|
|
615 |
|
Bibliography |
616 |
|
|
617 |
|
tidy up from misc - .tex |