/[MITgcm]/manual/manual_todo.txt
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revision 1.17 by edhill, Thu Apr 6 20:38:43 2006 UTC revision 1.30 by jmc, Thu Apr 20 13:10:04 2006 UTC
# Line 25  o HTML, scripts and front content Line 25  o HTML, scripts and front content
25        Tutorials (broken)        Tutorials (broken)
26        Browse Code        Browse Code
27    
     o mitgcm.org (front content) [DONE]  
       Get Code (where does this go to?)  
       get rid of * CVS current bullet  
       make HTML-enabled CVS code browser leap to MITgcm/MITgcm  
   
     o authors  
       John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen,  
       Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos,  
       Gael - others?  
   
28      o words on http://mitgcm.org/r2_web_testing/latest      o words on http://mitgcm.org/r2_web_testing/latest
29        change to        change to
30         "access on-line Auser manual/A and Atable of contents/A         "access on-line Auser manual/A and Atable of contents/A
# Line 339  in content: Horizontal Dissipation: 2 ti Line 329  in content: Horizontal Dissipation: 2 ti
329    
330  2.16 & 2.17 & 2.18 :  2.16 & 2.17 & 2.18 :
331   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options
332     - fix equations 2.202 & 2.203 (thanks to Martin)
333    
334  2.20.2 mercator, non-dimensional Equations:  2.20.2 mercator, non-dimensional Equations:
335  - does not use std notation  - does not use std notation
# Line 358  Chapter 3 Line 349  Chapter 3
349    
350  Almost all of the 'math mode' text is dropped down as subscripts  Almost all of the 'math mode' text is dropped down as subscripts
351    
 divide chapter 3 more clearly into 2 sections?  
    (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and  
     then 3.19 and 3.20 are informational again - rearrange subsections?)  
 [DONE]  
   
352  3.1 - don't need a link to the outside of the document (remove it)  3.1 - don't need a link to the outside of the document (remove it)
353      - link to htdig is broken      - link to htdig is broken
354    
# Line 408  divide chapter 3 more clearly into 2 sec Line 394  divide chapter 3 more clearly into 2 sec
394          are written.          are written.
395  3.6.1.2 - needs to be moved to inside section 3.6.2  3.6.1.2 - needs to be moved to inside section 3.6.2
396    
 3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18)  
       underneath this one and leave the text for 3.7 in place  
   
397  All the 'overview' sections need some reference to the name of the experiment in  All the 'overview' sections need some reference to the name of the experiment in
398  the verification directory  the verification directory
399    
# Line 538  Chapter 6 Line 521  Chapter 6
521    
522     the master package diagram does not appear in the document     the master package diagram does not appear in the document
523    
    pkg/ptracers doesn't seem to have any documentation (see packages list below)  
                 martin volunteered - get martin to ask steph  
   
   
524  Master list of packages (add this to beginning of chap 6)  Master list of packages (add this to beginning of chap 6)
525    
526  admtlm/               - autodiff (chapter 5)  admtlm/               - autodiff (chapter 5)
# Line 569  embed_files/          - add something to Line 548  embed_files/          - add something to
548  exch2/                - 6.2.2  exch2/                - 6.2.2
549  exf/                  - 6.3.4  exf/                  - 6.3.4
550  fizhi/                - 6.4.3  fizhi/                - 6.4.3
551  flt/                  - in chapter 2 (JM check)  flt/                  - (PH check)
552  gchem/                - 6.7.1  gchem/                - 6.7.1
553  generic_advdiff/      - in chapter 2 (JM check)  generic_advdiff/      - in chapter 2 (JM check)
554  ggl90/                - nothing, (Martin?)  ggl90/                - nothing, (Martin?)
555  gmredi/               - in chapter 2 (JM check). also need  gmredi/               - in chapter 2 (JM check). also need
556                          Ferrari & Mc tapering                          Ferrari & Mc transition zone stuff (Samar doing this)
557                            get dfer to read this
558  grdchk/               - grdchk (chapter 5 - check with PH)  grdchk/               - grdchk (chapter 5 - check with PH)
559  gridalt/              - 6.2.4  gridalt/              - 6.2.4
560  kpp/                  - 6.3.2  kpp/                  - 6.3.2
561  land/                 - 6.4.2 (not connected to code - JM to fix)  land/                 - 6.4.2 (not connected to code Rong's notes - JM to fix)
562  matrix/               - Samar  matrix/               - Samar
563  mdsio/                - 7.3.1  mdsio/                - 7.3.1
564  mnc/                  - 7.2.1  mnc/                  - 7.2.1
# Line 587  mom_fluxform/         - in chapter 2 (JM Line 567  mom_fluxform/         - in chapter 2 (JM
567  mom_vecinv/           - in chapter 2 (JM check)  mom_vecinv/           - in chapter 2 (JM check)
568  monitor/              - 7.4  monitor/              - 7.4
569  my82/                 - nothing, (martin?)  my82/                 - nothing, (martin?)
570  obcs/                 - 6.3 (needs a check)  obcs/                 - 6.3 (needs a check - ask PH to read)
571  ocn_compon_interf/    - 6.6 (no content yet)  ocn_compon_interf/    - 6.6 (no content yet)
572  offline/              - nothing, tutorials that need work but no package   section entry  offline/              - nothing, tutorials that need work but no package   section entry
573                            trivial to document (CNH to do)
574  opps/                 - nothing, (martin?)  opps/                 - nothing, (martin?)
575  pp81/                 - nothing, (martin?)  pp81/                 - nothing, (martin?)
576  profiles/             - GAEL  profiles/             - GAEL
577  ptracers/             - JM + SD to write something  ptracers/             - JM + SD + Martin to write something (nothing for this
578  rbcs/                 - talk to steph                            at the moment)
579  runclock/             - runclock                          AM has diagnostics table for this.
580  rw/                   - not sure  rbcs/                 - CNH to talk to steph
581    runclock/             - runclock - CNH
582    rw/                   - not sure - going to stay says JMC. quick IO calls
583                            JMC to write a quick note for that.
584  sbo/                  - text in sbo_descruption.tex but not linked into  sbo/                  - text in sbo_descruption.tex but not linked into
585                          part6                          part6 - CNH
586  seaice/               - 6.5.2 - no equations, dimitris has promised some  seaice/               - 6.5.2 - no equations, dimitris has promised some
587  shap_filt/            - chapter 2, JM to check  shap_filt/            - chapter 2, JM to check
588  shelfice/             - nothing yet (martin?)  shelfice/             - nothing yet (martin?)
589  solver/               - empty  solver/               - empty (go away?)
590  sphere/               - chapter 5 or 8 (PH to check)  sphere/               - chapter 5 or 8 (PH to check)
591  therm_seaice/         - empty  therm_seaice/         - empty (go away?)
592  thsice/               - 6.5.1 (JM to update?)  thsice/               - 6.5.1 (JM to update?)
593  timeave/              - retiring......  timeave/              - retiring......
594  zonal_filt/           - chapter 2 (JM to check)  zonal_filt/           - chapter 2 (JM to check)
595    
596  Possible for chap 7 - Daniels grafix/ stuff  list an expeiment which uses package? CNH
   
 Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started.  
   
 Figure 6.8 is missing  
597    
598  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997
599   Figure 6.8 is missing   Figure 6.8 is missing
# Line 634  to do list for chap 7: Line 614  to do list for chap 7:
614  andrea  andrea
615    
616    
617  9. Model uses  9. Publications using MITgcm --> "Previous Applications of MITgcm"
618     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...
619     (check in support for more names)     (check in support for more names)
620    
621    10. Under development
622    
623    
624    Bibliography
625    
626     tidy up from misc - .tex
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