| 391 |  |  | 
| 392 | Almost all of the 'math mode' text is dropped down as subscripts | Almost all of the 'math mode' text is dropped down as subscripts | 
| 393 |  |  | 
|  | 3.1 - don't need a link to the outside of the document (remove it) |  | 
|  | - link to htdig is broken |  | 
|  |  |  | 
|  | 3.2.1 - link at bottom to source code points to section 3.2.1 |  | 
|  | (ie, to itself) - link should point to cvs code archive |  | 
|  |  |  | 
|  | 3.2.2.1  - ('upgrading from an earlier version') belongs under |  | 
|  | the cvs part, ie, should be 3.2.1.1 |  | 
|  |  |  | 
|  | 3.3 - remove reference to 'diags' section under MITgcm |  | 
|  | - remove reference to 'exe' and 'bin' sections also |  | 
|  | (remove the .cvsignore file under these directories in cvs) |  | 
|  | - add a 'jobs' section, and a description as examples of run scripts |  | 
|  | - add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions |  | 
|  | - under 'tools' add a reference to 'build_options'. refer to the 'optfiles' |  | 
|  | - under 'tools' the adjoint points to section 5 - this is now section 8 |  | 
|  | (but should be a floating reference) |  | 
|  | - under 'utils' add a reference to exch2 - stuff for different resolutions |  | 
|  | - the description of the pkg section refers directly to |  | 
|  | section 3. should be section 6 (actually should be a floating reference) |  | 
|  |  |  | 
| 394 | 3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) | 3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) | 
| 395 | 3.4.1 - links to the following experiments don't exist or are broken: | 3.4.1 - links to the following experiments don't exist or are broken: | 
| 396 | exp2 - should link to section 3.9 | exp2 - should link to section 3.9 |