352 |
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353 |
JM |
JM |
354 |
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|
355 |
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|
356 |
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>>>> From Andrea |
357 |
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|
358 |
|
Chapter 3 |
359 |
|
-------- |
360 |
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|
361 |
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Almost all of the 'math mode' text is dropped down as subscripts |
362 |
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|
363 |
|
divide chapter 3 more clearly into 2 sections? |
364 |
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(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
365 |
|
then 3.19 and 3.20 are informational again - rearrange subsections?) |
366 |
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|
367 |
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3.1 - don't need a link to the outside of the document (remove it) |
368 |
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- link to htdig is broken |
369 |
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|
370 |
|
3.2.1 - link at bottom to source code points to section 3.2.1 |
371 |
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(ie, to itself) - link should point to cvs code archive |
372 |
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|
373 |
|
3.2.2.1 - ('upgrading from an earlier version') belongs under |
374 |
|
the cvs part, ie, should be 3.2.1.1 |
375 |
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|
376 |
|
3.3 - remove reference to 'diags' section under MITgcm |
377 |
|
- remove reference to 'exe' and 'bin' sections also |
378 |
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(remove the .cvsignore file under these directories in cvs) |
379 |
|
- add a 'jobs' section, and a description as examples of run scripts |
380 |
|
- add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions |
381 |
|
- under 'tools' add a reference to 'build_options'. refer to the 'optfiles' |
382 |
|
- under 'tools' the adjoint points to section 5 - this is now section 8 |
383 |
|
(but should be a floating reference) |
384 |
|
- under 'utils' add a reference to exch2 - stuff for different resolutions |
385 |
|
- the description of the pkg section refers directly to |
386 |
|
section 3. should be section 6 (actually should be a floating reference) |
387 |
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|
388 |
|
3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) |
389 |
|
3.4.1 - links to the following experiments don't exist or are broken: |
390 |
|
exp2 - should link to section 3.9 |
391 |
|
hs94.cs-32x32x5 - link to section 3.12 |
392 |
|
add 'convection' to the list, link to section 3.13 |
393 |
|
add 'plume on slope` to the list, link to section 3.14 |
394 |
|
add '??' link to section 3.15 |
395 |
|
add 'dic_example on slope` to the list, link to section 3.16 |
396 |
|
add '??' link to section 3.17 |
397 |
|
add 'offline' and link to section 3.18 |
398 |
|
clean up others and make links where they are needed |
399 |
|
3.4.2 - text suggests to see section 2 for details about what is in the 'code' |
400 |
|
and 'input' directories - should refer to the examples in this section |
401 |
|
- add 'build' bullet - this is where the model is compiled and exectuable lives |
402 |
|
|
403 |
|
3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options |
404 |
|
as the place where they live (add a link?) |
405 |
|
|
406 |
|
3.6.1 - Add some general 'approach' text - ie, output is controlled either by the |
407 |
|
'data' file in the input directory or by the data.[pkg name] file for any |
408 |
|
package running. And there is some default behavior when the 'state' dumps |
409 |
|
are written. |
410 |
|
3.6.1.2 - needs to be moved to inside section 3.6.2 |
411 |
|
|
412 |
|
3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18) |
413 |
|
underneath this one and leave the text for 3.7 in place |
414 |
|
|
415 |
|
All the 'overview' sections need some reference to the name of the experiment in |
416 |
|
the verification directory |
417 |
|
|
418 |
|
3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript |
419 |
|
- is this experiment in the list from section 3.4??? |
420 |
|
3.10.3.1 - refers to figures and equations, links are broken |
421 |
|
|
422 |
|
3.11.3.2 - line 43: link to equation is broken |
423 |
|
- line 51-53: link to equation is broken |
424 |
|
- there is some mess of text hanging around the end of this section. remove? reformat? |
425 |
|
|
426 |
|
3.12.4.1 - line 34 - link to equation is broken |
427 |
|
- lines 60,61 - 1st (take out the 'r' in the superscript) |
428 |
|
|
429 |
|
3.13.2 - link to theta-equation is broken |
430 |
|
3.13.5.4 -- ALL of the bold links to variable names are broken |
431 |
|
line 34: link to equation is broken |
432 |
|
|
433 |
|
3.15.1 - reference to 'fourth experiment' should be removed |
434 |
|
|
435 |
|
3.16.4 - strange formatting, presence of '>' symbols - remove them |
436 |
|
|
437 |
|
3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 |
438 |
|
3.17.3.1 - nothing filled in under file input/data - needs description |
439 |
|
|
440 |
|
3.18.2 - point to section 2 for details - need hyperlink |
441 |
|
|
442 |
|
3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! |
443 |
|
section 3.5 has the 'build' directory in the example |
444 |
|
|
445 |
|
3.20.1 - link to doc at end of section points to this section |
446 |
|
3.20.2 - link to doc at end of section points to this section |
447 |
|
|
448 |
|
offline - duplicate inputs, what is it, tidy up cfc v. |
449 |
|
other offline. JM thinks these need tidying up. |
450 |
>>>> From Ed |
>>>> From Ed |
451 |
|
|
452 |
Here are the remaining bits for Chap 4 : |
Here are the remaining bits for Chap 4 : |
570 |
|
|
571 |
andrea |
andrea |
572 |
|
|
|
>>>> From Andrea |
|
|
|
|
|
Chapter 3 |
|
|
-------- |
|
|
|
|
|
Almost all of the 'math mode' text is dropped down as subscripts |
|
|
|
|
|
divide chapter 3 more clearly into 2 sections? |
|
|
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
|
|
then 3.19 and 3.20 are informational again - rearrange subsections?) |
|
|
|
|
|
3.1 - don't need a link to the outside of the document (remove it) |
|
|
- link to htdig is broken |
|
|
|
|
|
3.2.1 - link at bottom to source code points to section 3.2.1 |
|
|
(ie, to itself) - link should point to cvs code archive |
|
|
|
|
|
3.2.2.1 - ('upgrading from an earlier version') belongs under |
|
|
the cvs part, ie, should be 3.2.1.1 |
|
|
|
|
|
3.3 - remove reference to 'diags' section under MITgcm |
|
|
- remove reference to 'exe' and 'bin' sections also |
|
|
(remove the .cvsignore file under these directories in cvs) |
|
|
- add a 'jobs' section, and a description as examples of run scripts |
|
|
- add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions |
|
|
- under 'tools' add a reference to 'build_options'. refer to the 'optfiles' |
|
|
- under 'tools' the adjoint points to section 5 - this is now section 8 |
|
|
(but should be a floating reference) |
|
|
- under 'utils' add a reference to exch2 - stuff for different resolutions |
|
|
- the description of the pkg section refers directly to |
|
|
section 3. should be section 6 (actually should be a floating reference) |
|
|
|
|
|
3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) |
|
|
3.4.1 - links to the following experiments don't exist or are broken: |
|
|
exp2 - should link to section 3.9 |
|
|
hs94.cs-32x32x5 - link to section 3.12 |
|
|
add 'convection' to the list, link to section 3.13 |
|
|
add 'plume on slope` to the list, link to section 3.14 |
|
|
add '??' link to section 3.15 |
|
|
add 'dic_example on slope` to the list, link to section 3.16 |
|
|
add '??' link to section 3.17 |
|
|
add 'offline' and link to section 3.18 |
|
|
clean up others and make links where they are needed |
|
|
3.4.2 - text suggests to see section 2 for details about what is in the 'code' |
|
|
and 'input' directories - should refer to the examples in this section |
|
|
- add 'build' bullet - this is where the model is compiled and exectuable lives |
|
|
|
|
|
3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options |
|
|
as the place where they live (add a link?) |
|
|
|
|
|
3.6.1 - Add some general 'approach' text - ie, output is controlled either by the |
|
|
'data' file in the input directory or by the data.[pkg name] file for any |
|
|
package running. And there is some default behavior when the 'state' dumps |
|
|
are written. |
|
|
3.6.1.2 - needs to be moved to inside section 3.6.2 |
|
|
|
|
|
3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18) |
|
|
underneath this one and leave the text for 3.7 in place |
|
|
|
|
|
All the 'overview' sections need some reference to the name of the experiment in |
|
|
the verification directory |
|
|
|
|
|
3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript |
|
|
- is this experiment in the list from section 3.4??? |
|
|
3.10.3.1 - refers to figures and equations, links are broken |
|
|
|
|
|
3.11.3.2 - line 43: link to equation is broken |
|
|
- line 51-53: link to equation is broken |
|
|
- there is some mess of text hanging around the end of this section. remove? reformat? |
|
|
|
|
|
3.12.4.1 - line 34 - link to equation is broken |
|
|
- lines 60,61 - 1st (take out the 'r' in the superscript) |
|
|
|
|
|
3.13.2 - link to theta-equation is broken |
|
|
3.13.5.4 -- ALL of the bold links to variable names are broken |
|
|
line 34: link to equation is broken |
|
|
|
|
|
3.15.1 - reference to 'fourth experiment' should be removed |
|
|
|
|
|
3.16.4 - strange formatting, presence of '>' symbols - remove them |
|
|
|
|
|
3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 |
|
|
3.17.3.1 - nothing filled in under file input/data - needs description |
|
|
|
|
|
3.18.2 - point to section 2 for details - need hyperlink |
|
|
|
|
|
3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! |
|
|
section 3.5 has the 'build' directory in the example |
|
|
|
|
|
3.20.1 - link to doc at end of section points to this section |
|
|
3.20.2 - link to doc at end of section points to this section |
|
|
|
|
|
offline - duplicate inputs, what is it, tidy up cfc v. |
|
|
other offline. JM thinks these need tidying up. |
|
|
|
|
573 |
|
|
574 |
9. Model uses |
9. Model uses |
575 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |