1 |
Editors |
2 |
|
3 |
Overall - JM, AM, PH, CNH, EH3 |
4 |
|
5 |
Front content - EH3 |
6 |
|
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Chapter 1 - CNH |
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|
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Chapter 2 - JMC |
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|
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Chapter 3 - AM |
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|
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Chapter 4 - CNH |
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|
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Chapter 5 - PH |
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|
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Chapter 6 - AM |
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|
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Chapter 7 - EH3 |
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|
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Chapter 8 - PH |
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|
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Chapter 9 - CNH (Applications) |
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|
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Chapter 10 - JMC (Under development chapter) |
26 |
|
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Biblio - EH3 |
28 |
|
29 |
Rebuild and set to do cron build - DONE on hugo |
30 |
|
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To do |
32 |
|
33 |
- where to put under development links? |
34 |
JMC would like to have some mention of unfinished things (checked in |
35 |
but not that tested e.g. AB3) |
36 |
Add an "Under development, chapter" - shortish description of what |
37 |
is available (last chapter) |
38 |
|
39 |
- add in example latex for formatting author names in different pieces. |
40 |
this aknowledges peoples contributions and gives ref for who |
41 |
to talk to. |
42 |
|
43 |
o HTML, scripts and front content |
44 |
|
45 |
- pick a URL |
46 |
TBD |
47 |
|
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- mitgcm.org/r2_web_testing/latest |
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o add another short-cut for quick download |
50 |
|
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o add another short-cut |
52 |
About |
53 |
Installation |
54 |
Contents |
55 |
Overview |
56 |
Tutorials (broken) |
57 |
Browse Code |
58 |
|
59 |
o words on http://mitgcm.org/r2_web_testing/latest |
60 |
change to |
61 |
"access on-line Auser manual/A and Atable of contents/A |
62 |
and browse the Aoverview section/A" |
63 |
|
64 |
o finite-volume doesn't leap to FV figure |
65 |
|
66 |
o have another go at pnmcrop et al. |
67 |
|
68 |
o Need an empty package as part of distribution. Check out atm_common |
69 |
|
70 |
o Latex |
71 |
|
72 |
Chapter 1 - CNH |
73 |
o single kernel diagram - |
74 |
add reference to MWR paper |
75 |
|
76 |
o non-hydro |
77 |
add reference to 1995 and 1999 papers |
78 |
pdf of 1995 paper |
79 |
|
80 |
o FV |
81 |
add references to 1997 papers. |
82 |
|
83 |
o Tangent linear/adjoint add reference to |
84 |
Heimbach papers, Marotzke, 1998 ECMWF, Bugi etc... |
85 |
|
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o platforms |
87 |
Add reference to SC article and Scientific Programming article |
88 |
|
89 |
o List of key papers needs to be updated and reformatted |
90 |
|
91 |
o Global atmosphere: `Held Suarez', |
92 |
update Adcroft reference |
93 |
fix up ingrid link and frame (ingrid movies seem to be broken?) |
94 |
Held and Suarez reference is not a link. |
95 |
|
96 |
o Ocean Gyres |
97 |
fix up frame link |
98 |
make "lopped cell" a link to referenced paper. |
99 |
add references (ask Steph/Mick) |
100 |
online/offline paper |
101 |
|
102 |
o Convection and mixing over topography |
103 |
add in Legg references for convection and mixing over topography |
104 |
and external link to CPT-GCE etc... |
105 |
|
106 |
o Boundary forced internal waves |
107 |
add in Legg references, obc's reference |
108 |
|
109 |
o Parameter sensitivity |
110 |
add in Bugnion references, Boyin references, Steph references |
111 |
|
112 |
o State estimation |
113 |
add in references from Patrick/Carl/Ichiro/Detlef etc... |
114 |
update links to point to latest ECCO results |
115 |
ECCO ingrid results have been moved |
116 |
add forward links to "ECCO state estimation" chapter in manual |
117 |
|
118 |
o Ocean biogeochemical cycles |
119 |
add in references from Mick/Galen etc... |
120 |
fix ingrid link ( date to date thing does not appear to work) |
121 |
figure url does not have a "target=idontexist" entry |
122 |
|
123 |
o Simulations of laboratory experiments |
124 |
reference Wardle and Karsten papers |
125 |
update links to include DDDAS "PIAB" page |
126 |
cylindrical polar coordinates |
127 |
|
128 |
o Continuos equations in ''r'' coordinates |
129 |
add references to iso paper |
130 |
no mention of z* and p* - forward reference to z*/p* in 2. |
131 |
add that coupling also manifests through F, Q |
132 |
add tracer transport |
133 |
|
134 |
o Kinematic boundary conditions |
135 |
|
136 |
o Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic and |
137 |
Non-hydrostatic forms |
138 |
need to tidy up discussion of shallow-atmosphere to be |
139 |
consistent with the code or change code to be consistent |
140 |
with the discussion! |
141 |
make references hyperlinks |
142 |
add stuff too |
143 |
JMC remove QNH atmosphere |
144 |
need to sort out calc_gw for deep atmosphere |
145 |
|
146 |
o Finding the pressure field |
147 |
make references hyperlinks |
148 |
add forward references to manual algorithm section |
149 |
change Elliptic to "elliptic" |
150 |
|
151 |
o Forcing and dissipation |
152 |
make "physics packages" refer to chapter 6. |
153 |
should we move "external forcing" et. al to a |
154 |
generic_forcing_driver package? |
155 |
|
156 |
viscosities |
157 |
update to mention Smag/Leith (Ah and A4 not constant) |
158 |
and to have forward references to numerical section |
159 |
tracers |
160 |
forward references to numerical section, reddy, GM etc... |
161 |
add references to literature |
162 |
|
163 |
o 1.3.8 Vector invariant form |
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forward references to numerical section |
165 |
|
166 |
o 1.3.9 Adjoint |
167 |
add a little more here + some hyperlink to chapter 5. |
168 |
|
169 |
o 1.4 Appendix ATMOSPHERE |
170 |
|
171 |
add some introductory words |
172 |
|
173 |
o 1.6 Coordinate systems |
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o only has some words on spherical polar. add some brief words |
175 |
to cover all of |
176 |
- cartesian |
177 |
- spherical |
178 |
- cylindrical |
179 |
- general orthogonal curvilinear (vector invariant) |
180 |
|
181 |
o Equation of state options |
182 |
add some discussion |
183 |
can't remember what we said we were going to do here |
184 |
PH to do something |
185 |
|
186 |
|
187 |
Change hydrodynamical to "dynamical" |
188 |
|
189 |
Examples |
190 |
|
191 |
- extra "in action" cases |
192 |
|
193 |
o high res ocean with diurnal atmospheric state forcing |
194 |
- links to ingrid output |
195 |
CNH/Dimitris |
196 |
|
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o realistic FIZHI from Andrea |
198 |
- links to ingrid output |
199 |
from AM |
200 |
|
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o with seaice on high res cube |
202 |
- links to ingrid output |
203 |
CNH/Dimitris |
204 |
|
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o coupled aqua, ridge world etc... |
206 |
- links to ingrid output |
207 |
get stuff from Daniel |
208 |
|
209 |
o constrained lab simulation |
210 |
- links to ingrid output for model and lab |
211 |
fields |
212 |
get stuff from Sai/Andrew |
213 |
|
214 |
o sensitivity wrt to iron |
215 |
|
216 |
o optimization |
217 |
- update to link to latest ECCO sites and GF |
218 |
related material |
219 |
|
220 |
o eddy diffusivity transport application |
221 |
|
222 |
o Gas giant? |
223 |
|
224 |
|
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>>>> from JM |
226 |
|
227 |
|
228 |
manual, section.2 : |
229 |
|
230 |
In general: |
231 |
- add more refences/links to S/R & variable name |
232 |
- would be nice to have an active link to the fortran-file |
233 |
for all the S/R & eq.Number in the "calling-tree" boxes |
234 |
- search for CALC_MOM_RHS and replace it by the appropriate S/R |
235 |
(mom_flux_form, mom_vecinv, dynamics) |
236 |
- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
237 |
was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
238 |
in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
239 |
simply written \vec{v}. |
240 |
I would suggest to keep the notation as they are (since they are consistent |
241 |
inside each section) but may be to move the "notation.tex" piece |
242 |
at the beginning of section.2 and to mention clearly the changes between |
243 |
the 2 sections. |
244 |
|
245 |
in content: Horizontal Dissipation: 2 times in vector-invariant section |
246 |
|
247 |
2.1 time-stepping (part2/time_stepping.tex) |
248 |
|
249 |
- this is not clear to me: |
250 |
|
251 |
>> In all the above configurations it is also possible to substitute the |
252 |
>> Adams-Bashforth with an alternative time-stepping scheme for terms |
253 |
>> evaluated explicitly in time |
254 |
|
255 |
|
256 |
2.2 rigid-lid: |
257 |
|
258 |
- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
259 |
to stay closer to the code. |
260 |
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) |
261 |
|
262 |
2.3 linear free-surface: |
263 |
- add ref(+link) to S/R names: |
264 |
- add ref(+link) to Crank-Nickelson section 2.9.1 |
265 |
|
266 |
2.4 Adams-Bashforth |
267 |
- add stability diagrams (I have some figures that I can put) |
268 |
- add link for var. forcing_In_AB |
269 |
- add S/R link for S/R ADAMS_BASHFORTH2 |
270 |
|
271 |
2.5 Implicit time-stepping |
272 |
- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
273 |
SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL |
274 |
- update: also used for vertical advection |
275 |
|
276 |
2.6 Synchronous time-stepping: |
277 |
- add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE, |
278 |
MOMENTUM_CORRECTION_STEP. |
279 |
|
280 |
2.7 Stagger baroclinic time-stepping |
281 |
- mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end |
282 |
|
283 |
2.8 NH |
284 |
- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
285 |
|
286 |
2.9 Variants on Free-Surface |
287 |
- Delta.t mis-written (eq.2.73) |
288 |
- Eq.Num missing (has been fixed since) |
289 |
- u* is stored in gU (and not in gUnm1) |
290 |
- Phi_nh in NH_VARS.h |
291 |
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
292 |
INI_CG2D, INI_CG3D |
293 |
|
294 |
2.9.1 Crank-Nickelson |
295 |
- link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater |
296 |
|
297 |
2.9.2 NLFS |
298 |
- eq.Nb are wrong in html |
299 |
- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
300 |
|
301 |
2.10.1 Notation |
302 |
- Area definition is not really used like this |
303 |
|
304 |
>> Ao : Area of the face orthogonal to "o" direction (o=u,v,w) |
305 |
|
306 |
Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
307 |
the model variables) are used (e.g., see section 2.10.5) |
308 |
|
309 |
2.10.5 Horizontal grid: |
310 |
- fig.2.8 : should use Aw,As consistently in this figure description, |
311 |
in the figure itself, as it is in the text. |
312 |
- curvilinear: |
313 |
to add: mention the angle of the grid direction relative to |
314 |
Eastward, Northward direction. |
315 |
+ mention horizGridFile= in file "data" (PARM04) |
316 |
- add cylindrical polar grid description |
317 |
need to do a better job of relating model variables to this diagram |
318 |
|
319 |
|
320 |
2.11 Continuity & Horizontal Pressure gradient terms |
321 |
- mention that d.Phi/dr|s =g if using z coordinate |
322 |
- eq. 2.90 not clear regarding \delta_k(P-E) |
323 |
better to add the free surface eq: d.eta/dt = w_s + P-E |
324 |
|
325 |
2.12 Hydrostatic balance |
326 |
- add ref to Atmosphere Appendix section (1.4) since Adcroft 2002 |
327 |
is hard to find |
328 |
- add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H) |
329 |
and in section 1.3.4: remove the 1.3.4.3.2 subsection: |
330 |
Quasi-nonhydrostatic Atmosphere |
331 |
|
332 |
2.13.2 Coriolis terms |
333 |
- note: the discretization used when useEnergyConservingCoriolis=T |
334 |
has no hFac and no Area and is still different from the form |
335 |
described here (with Area & hFac); |
336 |
|
337 |
2.13.5 Lateral dissipation |
338 |
- add description of how to use cosFactor & cosPower |
339 |
- add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4 |
340 |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
341 |
in code need to explain why cos()3/2 turns out to be |
342 |
scaling (not cos()2) |
343 |
- need to reference the smag/leith section. |
344 |
|
345 |
2.13.6 Vertical dissipation |
346 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
347 |
- add the parameter correspondence: Av <-> viscAr (and might change also |
348 |
the notation to Ar) |
349 |
|
350 |
2.14 Vector invariant momentum equations |
351 |
- indicate that the NH pieces (vertical momentum eq) are not yet coded |
352 |
and that the NH code uses the flux form. |
353 |
|
354 |
2.14.6 Horizontal dissipation -> Horizontal Divergence |
355 |
|
356 |
2.14.7 Horizontal dissipation |
357 |
- add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ |
358 |
and A_D4,A_z4 <-> viscA4D,viscA4Z |
359 |
|
360 |
2.16 & 2.17 & 2.18 : |
361 |
- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
362 |
- fix equations 2.202 & 2.203 (thanks to Martin) |
363 |
|
364 |
2.20.2 mercator, non-dimensional Equations: |
365 |
- does not use std notation |
366 |
- would be better as an appendix of section 2.20: |
367 |
(e.g changing the tile to: |
368 |
- talk to Baylor |
369 |
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
370 |
|
371 |
|
372 |
Diagrams of grid locations etc.... and what variables and output files |
373 |
and/or netcdf variable names are not very easy to figure out and follow. |
374 |
It would be good to redo and extend these diagrams and align with GRID.h |
375 |
content. |
376 |
|
377 |
|
378 |
JM |
379 |
|
380 |
|
381 |
>>>> From Andrea |
382 |
|
383 |
Chapter 3 |
384 |
-------- |
385 |
|
386 |
Almost all of the 'math mode' text is dropped down as subscripts |
387 |
|
388 |
3.1 - don't need a link to the outside of the document (remove it) |
389 |
- link to htdig is broken |
390 |
|
391 |
3.2.1 - link at bottom to source code points to section 3.2.1 |
392 |
(ie, to itself) - link should point to cvs code archive |
393 |
|
394 |
3.2.2.1 - ('upgrading from an earlier version') belongs under |
395 |
the cvs part, ie, should be 3.2.1.1 |
396 |
|
397 |
3.3 - remove reference to 'diags' section under MITgcm |
398 |
- remove reference to 'exe' and 'bin' sections also |
399 |
(remove the .cvsignore file under these directories in cvs) |
400 |
- add a 'jobs' section, and a description as examples of run scripts |
401 |
- add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions |
402 |
- under 'tools' add a reference to 'build_options'. refer to the 'optfiles' |
403 |
- under 'tools' the adjoint points to section 5 - this is now section 8 |
404 |
(but should be a floating reference) |
405 |
- under 'utils' add a reference to exch2 - stuff for different resolutions |
406 |
- the description of the pkg section refers directly to |
407 |
section 3. should be section 6 (actually should be a floating reference) |
408 |
|
409 |
3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10) |
410 |
3.4.1 - links to the following experiments don't exist or are broken: |
411 |
exp2 - should link to section 3.9 |
412 |
hs94.cs-32x32x5 - link to section 3.12 |
413 |
add 'convection' to the list, link to section 3.13 |
414 |
add 'plume on slope` to the list, link to section 3.14 |
415 |
add '??' link to section 3.15 |
416 |
add 'dic_example on slope` to the list, link to section 3.16 |
417 |
add '??' link to section 3.17 |
418 |
add 'offline' and link to section 3.18 |
419 |
clean up others and make links where they are needed |
420 |
3.4.2 - text suggests to see section 2 for details about what is in the 'code' |
421 |
and 'input' directories - should refer to the examples in this section |
422 |
- add 'build' bullet - this is where the model is compiled and exectuable lives |
423 |
|
424 |
3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options |
425 |
as the place where they live (add a link?) |
426 |
|
427 |
3.6.1 - Add some general 'approach' text - ie, output is controlled either by the |
428 |
'data' file in the input directory or by the data.[pkg name] file for any |
429 |
package running. And there is some default behavior when the 'state' dumps |
430 |
are written. |
431 |
3.6.1.2 - needs to be moved to inside section 3.6.2 |
432 |
|
433 |
All the 'overview' sections need some reference to the name of the experiment in |
434 |
the verification directory |
435 |
|
436 |
3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript |
437 |
- is this experiment in the list from section 3.4??? |
438 |
3.10.3.1 - refers to figures and equations, links are broken |
439 |
|
440 |
3.11.3.2 - line 43: link to equation is broken |
441 |
- line 51-53: link to equation is broken |
442 |
- there is some mess of text hanging around the end of this section. remove? reformat? |
443 |
|
444 |
3.12.4.1 - line 34 - link to equation is broken |
445 |
- lines 60,61 - 1st (take out the 'r' in the superscript) |
446 |
|
447 |
3.13.2 - link to theta-equation is broken |
448 |
3.13.5.4 -- ALL of the bold links to variable names are broken |
449 |
line 34: link to equation is broken |
450 |
|
451 |
3.15.1 - reference to 'fourth experiment' should be removed |
452 |
|
453 |
3.16.4 - strange formatting, presence of '>' symbols - remove them |
454 |
|
455 |
3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4 |
456 |
3.17.3.1 - nothing filled in under file input/data - needs description |
457 |
|
458 |
3.18.2 - point to section 2 for details - need hyperlink |
459 |
|
460 |
3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true! |
461 |
section 3.5 has the 'build' directory in the example |
462 |
|
463 |
3.20.1 - link to doc at end of section points to this section |
464 |
3.20.2 - link to doc at end of section points to this section |
465 |
|
466 |
offline - duplicate inputs, what is it, tidy up cfc v. |
467 |
other offline. JM thinks these need tidying up. |
468 |
|
469 |
Which of the following are which tutorial? |
470 |
adjustment.128x64x1 |
471 |
adjustment.cs-32x32x1 |
472 |
advect_cs |
473 |
advect_xy |
474 |
advect_xz |
475 |
aim.5l_cs |
476 |
aim.5l_Equatorial_Channel |
477 |
aim.5l_LatLon |
478 |
biogeo |
479 |
bottom_ctrl_5x5 |
480 |
cfc_example |
481 |
cpl_aim+ocn |
482 |
dome |
483 |
exp2 |
484 |
exp4 |
485 |
exp5 |
486 |
fizhi-cs-32x32x10 |
487 |
fizhi-cs-aqualev20 |
488 |
fizhi-gridalt-hs |
489 |
flt_example |
490 |
front_relax |
491 |
global1x1_tot |
492 |
global2x2_tot |
493 |
global_ocean.90x40x15 |
494 |
global_ocean.cs32x15 |
495 |
global_ocean.cubed32x32x30 |
496 |
global_ocean_ebm |
497 |
global_with_exf |
498 |
hs94.128x64x5 |
499 |
hs94.1x64x5 |
500 |
hs94.cs-32x32x5 |
501 |
ideal_2D_oce |
502 |
internal_wave |
503 |
inverted_barometer |
504 |
lab_sea |
505 |
matrix_example |
506 |
MLAdjust |
507 |
natl_box |
508 |
natl_box_adjoint |
509 |
OpenAD |
510 |
rotating_tank |
511 |
solid-body.cs-32x32x1 |
512 |
tidal_basin_2d |
513 |
tutorial_baroclinic_gyre |
514 |
tutorial_barotropic_gyre |
515 |
tutorial_cfc_offline |
516 |
tutorial_deep_convection |
517 |
tutorial_global_oce_biogeo |
518 |
tutorial_global_oce_in_p |
519 |
tutorial_global_oce_latlon |
520 |
tutorial_global_oce_optim |
521 |
tutorial_held_suarez_cs |
522 |
tutorial_offline |
523 |
tutorial_plume_on_slope |
524 |
tutorial_tracer_adjsens |
525 |
vermix |
526 |
|
527 |
>>>> From Ed |
528 |
|
529 |
Here are the remaining bits for Chap 4 : |
530 |
|
531 |
- missing references (if you point me towards URLs, I'll add them |
532 |
to the bibliography): |
533 |
\ref{ref hoe and hill, ecmwf} |
534 |
\ref{magicgarden} |
535 |
\ref{IBMLAPI} |
536 |
\ref{Memorychannel} |
537 |
\ref{hoe-hill:99} |
538 |
|
539 |
- There are a few empty sub-sections at the end of Chap 4 that |
540 |
should either be commented out or fleshed out. |
541 |
|
542 |
and thats about it for Chap 4. |
543 |
|
544 |
|
545 |
Add more to quick links on front page |
546 |
|
547 |
Chapter 6 |
548 |
|
549 |
the master package diagram does not appear in the document |
550 |
|
551 |
Master list of packages (add this to beginning of chap 6) |
552 |
|
553 |
admtlm/ - autodiff (chapter 5) |
554 |
aim/ - retired |
555 |
aim_compon_interf/ - 6.6 (no content yet)(Daniel + JM) |
556 |
aim_ocn_coupler/ - 6.6 (no content yet) |
557 |
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
558 |
atm_common/ - nothing in this package (6.4.1 related) |
559 |
autodiff/ - autodiff (chapter 5) |
560 |
bulk_force/ - 6.3.3 |
561 |
cal/ - 6.3.5 |
562 |
cd_code/ - chapter 2 (JM check add a reference to paper, |
563 |
mention parameter in data) |
564 |
cfc/ - not sure (CNH to talk to Steph and Helen) |
565 |
chronos/ - AM to check (not being used - Andrea to kill it) |
566 |
compon_communic/ - 6.6 (no content yet)(Daniel + JM) |
567 |
cost/ - not sure, check with PH |
568 |
ctrl/ - not sure, check with PH |
569 |
debug/ - JM may do something in chapter 7 (utilities) |
570 |
diagnostics/ - 7.1 |
571 |
dic/ - 6.7.2 |
572 |
ebm/ - (check with PH) |
573 |
ecco/ - chapter 8 |
574 |
embed_files/ - add something to chapter 7 |
575 |
exch2/ - 6.2.2 |
576 |
exf/ - 6.3.4 |
577 |
fizhi/ - 6.4.3 |
578 |
flt/ - (PH check) |
579 |
gchem/ - 6.7.1 |
580 |
generic_advdiff/ - in chapter 2 (JM check) |
581 |
ggl90/ - nothing, (Martin?) |
582 |
gmredi/ - in chapter 2 (JM check). also need |
583 |
Ferrari & Mc transition zone stuff (Samar doing this) |
584 |
get dfer to read this |
585 |
grdchk/ - grdchk (chapter 5 - check with PH) |
586 |
gridalt/ - 6.2.4 |
587 |
kpp/ - 6.3.2 |
588 |
land/ - 6.4.2 (not connected to code Rong's notes - JM to fix) |
589 |
matrix/ - Samar |
590 |
mdsio/ - 7.3.1 |
591 |
mnc/ - 7.2.1 |
592 |
mom_common/ - in chapter 2 (JM check) |
593 |
mom_fluxform/ - in chapter 2 (JM check) |
594 |
mom_vecinv/ - in chapter 2 (JM check) |
595 |
monitor/ - 7.4 |
596 |
my82/ - nothing, (martin?) |
597 |
obcs/ - 6.3 (needs a check - ask PH to read) |
598 |
ocn_compon_interf/ - 6.6 (no content yet) |
599 |
offline/ - nothing, tutorials that need work but no package section entry |
600 |
trivial to document (CNH to do) |
601 |
opps/ - nothing, (martin?) |
602 |
pp81/ - nothing, (martin?) |
603 |
profiles/ - GAEL |
604 |
ptracers/ - JM + SD + Martin to write something (nothing for this |
605 |
at the moment) |
606 |
AM has diagnostics table for this. |
607 |
rbcs/ - CNH to talk to steph |
608 |
runclock/ - runclock - CNH |
609 |
rw/ - not sure - going to stay says JMC. quick IO calls |
610 |
JMC to write a quick note for that. |
611 |
sbo/ - text in sbo_descruption.tex but not linked into |
612 |
part6 - CNH |
613 |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
614 |
shap_filt/ - chapter 2, JM to check |
615 |
shelfice/ - nothing yet (martin?) |
616 |
solver/ - empty (go away?) |
617 |
sphere/ - chapter 5 or 8 (PH to check) |
618 |
therm_seaice/ - empty (go away?) |
619 |
thsice/ - 6.5.1 (JM to update?) |
620 |
timeave/ - retiring...... |
621 |
zonal_filt/ - chapter 2 (JM to check) |
622 |
|
623 |
list an expeiment which uses package? CNH |
624 |
|
625 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
626 |
Figure 6.8 is missing |
627 |
|
628 |
|
629 |
===== Chapter 7 ===== [EH3 editing] : |
630 |
|
631 |
7.1.1 - links to section 7.1.4: the text of the first |
632 |
one should read "see MITgcm Kernel Diagnostics Menu" |
633 |
the links are pointing to the proper place |
634 |
|
635 |
7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) |
636 |
|
637 |
7.5.2 - get bathymetry pre-processing stuff from Patrick |
638 |
and then describe it |
639 |
|
640 |
|
641 |
andrea |
642 |
|
643 |
|
644 |
9. Publications using MITgcm --> "Previous Applications of MITgcm" |
645 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
646 |
(check in support for more names) |
647 |
|
648 |
10. Under development |
649 |
|
650 |
Constantinos LCML |
651 |
|
652 |
|
653 |
Bibliography |
654 |
|
655 |
tidy up from misc - .tex |