/[MITgcm]/manual/manual_todo.txt
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revision 1.41 by molod, Wed Jun 28 17:21:21 2006 UTC revision 1.46 by edhill, Sun Jul 2 18:12:45 2006 UTC
# Line 26  Editors Line 26  Editors
26    
27   Biblio        - EH3   Biblio        - EH3
28    
29    
30  Rebuild and set to do cron build - DONE on hugo  Rebuild and set to do cron build - DONE on hugo
31    
32  To do  To do
# Line 42  To do Line 43  To do
43    
44  o HTML, scripts and front content  o HTML, scripts and front content
45    
46    - pick a URL    - pick a URL:  mitgcm.org/r2  <-- EH3's preferred base URL
     TBD  
47    
48    - mitgcm.org/r2_web_testing/latest    - mitgcm.org/r2_web_testing/latest
49      o add another short-cut for quick download      
50        o --DONE--  add another short-cut for quick download
51    
52        o --DONE--  add another short-cut
53                      About
54                      Installation
55                      Contents
56                      Overview
57                      Tutorials (broken)
58                      Browse Code
59    
60        o --DONE--  words on http://mitgcm.org/r2_web_testing/latest change to
61    
62      o add another short-cut      o --DONE--  finite-volume doesn't leap to FV figure
       About  
       Installation  
       Contents  
       Overview  
       Tutorials (broken)  
       Browse Code  
   
     o words on http://mitgcm.org/r2_web_testing/latest  
       change to  
        "access on-line Auser manual/A and Atable of contents/A  
         and browse the Aoverview section/A"  
63    
64      o finite-volume doesn't leap to FV figure      o -- DONE ??? --  have another go at pnmcrop et al.
65    
66      o have another go at pnmcrop et al.           I've tried making a small change in latex2html which fixes
67             the oddball-lower-alignment issue that we were seeing with
68             most in-line expressions (that is, math embedded in text).
69             The fix results in some things being slightly raised but I
70             thin this is more asthetically pleasing than being somewhat
71             lowered as before. --EH3
72    
73             To view the altered alignment, see:
74    
75                http://eddy.csail.mit.edu/r2/latest/
76    
77      o Need an empty package as part of distribution. Check out atm_common      o Need an empty package as part of distribution. Check out atm_common
78    
79    
80  o Latex    o Latex  
81    
82      Chapter 1                 - CNH      Chapter 1                 - CNH
# Line 260  in content: Horizontal Dissipation: 2 ti Line 270  in content: Horizontal Dissipation: 2 ti
270    
271  - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)"  - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)"
272    to stay closer to the code.    to stay closer to the code.
273  - mention section 2.5 implicit-Time-stepping (for vertical viscosity)  - mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE
274    
275  2.3 linear free-surface:  2.3 linear free-surface:
276  - add ref(+link) to S/R names:  - add ref(+link) to S/R names:
277  - add ref(+link) to Crank-Nickelson section 2.9.1  - add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE
278    
279  2.4 Adams-Bashforth  2.4 Adams-Bashforth
280  - add stability diagrams (I have some figures that I can put)  - add stability diagrams (I have some figures that I can put) <- DONE
281  - add link for var. forcing_In_AB  - add link for var. forcing_In_AB and epsil_AB <- half DONE
282  - add S/R link for S/R ADAMS_BASHFORTH2  - add S/R link for S/R ADAMS_BASHFORTH2 <-DONE
283    
284  2.5 Implicit time-stepping  2.5 Implicit time-stepping
285  - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R  - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R
# Line 391  Chapter 3 Line 401  Chapter 3
401    
402  Almost all of the 'math mode' text is dropped down as subscripts  Almost all of the 'math mode' text is dropped down as subscripts
403    
404  3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript  3.11.3.1 - refers to figures and equations, links are broken
      - is this experiment in the list from section 3.4???  
 3.10.3.1 - refers to figures and equations, links are broken  
405    
406  3.11.3.2 - line 43: link to equation is broken  3.12.3.2 - line 43: link to equation is broken
407           - line 51-53: link to equation is broken           - line 51-53: link to equation is broken
408           - there is some mess of text hanging around the end of this section. remove? reformat?           - there is some mess of text hanging around the end of this section. remove? reformat?
409    
410  3.12.4.1 - line 34 - link to equation is broken  3.13.4.1 - line 34 - link to equation is broken
411           - lines 60,61 - 1st (take out the 'r' in the superscript)           - lines 60,61 - 1st (take out the 'r' in the superscript)
412    
413  3.13.2 - link to theta-equation is broken  3.14.2 - link to theta-equation is broken
414  3.13.5.4 -- ALL of the bold links to variable names are broken  3.14.5.4 -- ALL of the bold links to variable names are broken
415              line 34: link to equation is broken              line 34: link to equation is broken
416    
 3.15.1 - reference to 'fourth experiment' should be removed  
   
 3.16.4 - strange formatting, presence of '>' symbols - remove them  
   
 3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4  
 3.17.3.1 - nothing filled in under file input/data - needs description  
   
 3.18.2 - point to section 2 for details - need hyperlink  
   
 3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true!  
          section 3.5 has the 'build' directory in the example  
   
 3.20.1 - link to doc at end of section points to this section  
 3.20.2 - link to doc at end of section points to this section  
   
      offline - duplicate inputs, what is it, tidy up cfc v.  
                other offline. JM thinks these need tidying up.  
   
 Which of the following are which tutorial?  
 adjustment.128x64x1  
 adjustment.cs-32x32x1  
 advect_cs  
 advect_xy  
 advect_xz  
 aim.5l_cs  
 aim.5l_Equatorial_Channel  
 aim.5l_LatLon  
 biogeo  
 bottom_ctrl_5x5  
 cfc_example  
 cpl_aim+ocn  
 dome  
 exp2  
 exp4  
 exp5  
 fizhi-cs-32x32x10  
 fizhi-cs-aqualev20  
 fizhi-gridalt-hs  
 flt_example  
 front_relax  
 global1x1_tot  
 global2x2_tot  
 global_ocean.90x40x15  
 global_ocean.cs32x15  
 global_ocean.cubed32x32x30  
 global_ocean_ebm  
 global_with_exf  
 hs94.128x64x5  
 hs94.1x64x5  
 hs94.cs-32x32x5  
 ideal_2D_oce  
 internal_wave  
 inverted_barometer  
 lab_sea  
 matrix_example  
 MLAdjust  
 natl_box  
 natl_box_adjoint  
 OpenAD  
 rotating_tank  
 solid-body.cs-32x32x1  
 tidal_basin_2d  
 tutorial_baroclinic_gyre  
 tutorial_barotropic_gyre  
 tutorial_cfc_offline  
 tutorial_deep_convection  
 tutorial_global_oce_biogeo  
 tutorial_global_oce_in_p  
 tutorial_global_oce_latlon  
 tutorial_global_oce_optim  
 tutorial_held_suarez_cs  
 tutorial_offline  
 tutorial_plume_on_slope  
 tutorial_tracer_adjsens  
 vermix  
   
417  >>>> From Ed  >>>> From Ed
418    
419  Here are the remaining bits for Chap 4 :  Here are the remaining bits for Chap 4 :
# Line 586  list an expeiment which uses package? CN Line 518  list an expeiment which uses package? CN
518    
519  =====  Chapter 7  =====  [EH3 editing] :  =====  Chapter 7  =====  [EH3 editing] :
520    
521  7.1.x - JMC: please add description of:   + JMC: please add description of:
522          - diagstat          - diagstat
523          - new temporal averaging feature          - new temporal averaging feature
524    
525  7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel)   + add Graphix to the list of stuff in utils/matlab (Daniel)
526    
527     + get bathymetry pre-processing stuff from Patrick and then describe it
528    
529  7.5.2 - get bathymetry pre-processing stuff from Patrick   + add something on spgrid mesh generator
         and then describe it  
530    
531  add something on spgrid mesh generator (maybe)?   + add in gmaze PV calculation scripts plus write up on how it is calculated
532         http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/
533    
534    
535  andrea  andrea
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