--- manual/manual_todo.txt	2006/06/26 00:41:02	1.31
+++ manual/manual_todo.txt	2006/06/28 16:27:02	1.39
@@ -1,3 +1,31 @@
+Editors
+
+ Overall       - JM, AM, PH, CNH, EH3
+
+ Front content - EH3
+
+ Chapter 1     - CNH
+
+ Chapter 2     - JMC
+
+ Chapter 3     -  AM
+
+ Chapter 4     - CNH
+
+ Chapter 5     -  PH
+
+ Chapter 6     -  AM
+
+ Chapter 7     - EH3
+
+ Chapter 8     -  PH
+
+ Chapter 9     - CNH (Applications)
+
+ Chapter 10    - JMC (Under development chapter)
+
+ Biblio        - EH3
+
 Rebuild and set to do cron build - DONE on hugo
 
 To do
@@ -8,6 +36,9 @@
     Add an "Under development, chapter" - shortish description of what
     is available (last chapter)
 
+  - add in example latex for formatting author names in different pieces.
+    this aknowledges peoples contributions and gives ref for who
+    to talk to.
 
 o HTML, scripts and front content
 
@@ -57,7 +88,6 @@
 
       o List of key papers needs to be updated and reformatted
 
-
       o Global atmosphere: `Held Suarez',
         update Adcroft reference
         fix up ingrid link and frame (ingrid movies seem to be broken?)
@@ -175,6 +205,7 @@
           o coupled aqua, ridge world etc...
             - links to ingrid output
               get stuff from Daniel
+              Davids donut movie
 
           o constrained lab simulation
             - links to ingrid output for model and lab
@@ -202,7 +233,7 @@
 - would be nice to have an active link to the fortran-file 
   for all the S/R & eq.Number in the "calling-tree" boxes
 - search for CALC_MOM_RHS and replace it by the appropriate S/R
-  (mom_flux_form, mom_vecinv, dynamics)
+  (mom_flux_form, mom_vecinv, dynamics) <- DONE
 - Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h})
 was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}}
 in section.2, \vec{\bf v} is used instead and 3.D velocity vector is 
@@ -213,6 +244,7 @@
 the 2 sections.
 
 in content: Horizontal Dissipation: 2 times in vector-invariant section
+<- DONE
 
 2.1 time-stepping (part2/time_stepping.tex)
 
@@ -221,6 +253,7 @@
 >> In all the above configurations it is also possible to substitute the
 >> Adams-Bashforth with an alternative time-stepping scheme for terms
 >> evaluated explicitly in time
+<- Leave it general.
 
 
 2.2 rigid-lid:
@@ -254,10 +287,10 @@
 - add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D
 
 2.9 Variants on Free-Surface
-- Delta.t mis-written (eq.2.73)
-- Eq.Num missing (has been fixed since)
-- u* is stored in gU (and not in gUnm1)
-- Phi_nh in NH_VARS.h
+- Delta.t mis-written (eq.2.73) <- DONE
+- Eq.Num missing <- DONE
+- u* is stored in gU (and not in gUnm1) <- DONE
+- Phi_nh in NH_VARS.h <- DONE
 - add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, 
   INI_CG2D, INI_CG3D
 
@@ -267,6 +300,7 @@
 2.9.2 NLFS
 - eq.Nb are wrong in html
 - 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) 
+ <- DONE
 
 2.10.1 Notation
 - Area definition is not really used like this
@@ -275,10 +309,11 @@
 
   Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to 
   the model variables) are used (e.g., see section 2.10.5)
+<- DONE
 
 2.10.5 Horizontal grid:
 - fig.2.8 : should use Aw,As consistently in this figure description,
-  in the figure itself, as it is in the text.
+  in the figure itself, as it is in the text. <- DONE
 - curvilinear: 
   to add: mention the angle of the grid direction relative to 
   Eastward, Northward direction.
@@ -329,7 +364,7 @@
 
 2.16 & 2.17 & 2.18 : 
  - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options
- - fix equations 2.202 & 2.203 (thanks to Martin)
+ - fix equations 2.202 & 2.203 (thanks to Martin) <- DONE
 
 2.20.2 mercator, non-dimensional Equations:
 - does not use std notation
@@ -337,6 +372,13 @@
 (e.g changing the tile to:
 - talk to Baylor
  Appendix: non-dimensional Equations on Spherical-Polar grid.)
+ <- No (Chris said)
+
+
+Diagrams of grid locations etc.... and what variables and output files 
+and/or netcdf variable names are not very easy to figure out and follow.
+It would be good to redo and extend these diagrams and align with GRID.h
+content.
  
 
 JM
@@ -590,16 +632,18 @@
  Figure 6.8 is missing
 
 
->>>> From Andrea
+=====  Chapter 7  =====  [EH3 editing] :
 
-to do list for chap 7:
+7.1.x - JMC: please add description of:
+	- diagstat
+	- new temporal averaging feature
 
+7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel)
 
-7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu"
-        the links are pointing to the proper place
+7.5.2 - get bathymetry pre-processing stuff from Patrick
+        and then describe it
 
-7.5.1 - add Graphix to the list of stuff in utils/matlab
-7.5.2 - empty
+add something on spgrid mesh generator (maybe)?
 
 
 andrea
@@ -611,6 +655,8 @@
 
 10. Under development
 
+Constantinos LCML
+
 
 Bibliography