--- manual/manual_todo.txt	2006/04/06 20:39:25	1.18
+++ manual/manual_todo.txt	2006/04/19 22:44:49	1.29
@@ -25,16 +25,6 @@
       Tutorials (broken)
       Browse Code
 
-    o mitgcm.org (front content) [DONE]
-      Get Code (where does this go to?)
-      get rid of * CVS current bullet
-      make HTML-enabled CVS code browser leap to MITgcm/MITgcm
-
-    o authors
-      John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen,
-      Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos,
-      Gael - others?
-
     o words on http://mitgcm.org/r2_web_testing/latest
       change to 
        "access on-line Auser manual/A and Atable of contents/A
@@ -358,11 +348,6 @@
 
 Almost all of the 'math mode' text is dropped down as subscripts
 
-divide chapter 3 more clearly into 2 sections?
-   (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and
-    then 3.19 and 3.20 are informational again - rearrange subsections?)
-[DONE]
-
 3.1 - don't need a link to the outside of the document (remove it)
     - link to htdig is broken
 
@@ -408,9 +393,6 @@
         are written.
 3.6.1.2 - needs to be moved to inside section 3.6.2
 
-3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18)
-      underneath this one and leave the text for 3.7 in place
-
 All the 'overview' sections need some reference to the name of the experiment in
 the verification directory
 
@@ -538,10 +520,6 @@
 
    the master package diagram does not appear in the document
 
-   pkg/ptracers doesn't seem to have any documentation (see packages list below)
-                martin volunteered - get martin to ask steph
-
-
 Master list of packages (add this to beginning of chap 6)
 
 admtlm/               - autodiff (chapter 5)
@@ -588,33 +566,33 @@
 mom_vecinv/           - in chapter 2 (JM check)
 monitor/              - 7.4
 my82/                 - nothing, (martin?)
-obcs/                 - 6.3 (needs a check)
+obcs/                 - 6.3 (needs a check - ask PH to read)
 ocn_compon_interf/    - 6.6 (no content yet)
 offline/              - nothing, tutorials that need work but no package   section entry
+                        trivial to document (CNH to do)
 opps/                 - nothing, (martin?)
 pp81/                 - nothing, (martin?)
 profiles/             - GAEL
-ptracers/             - JM + SD to write something
-rbcs/                 - talk to steph
-runclock/             - runclock
-rw/                   - not sure
+ptracers/             - JM + SD + Martin to write something (nothing for this
+                          at the moment)
+                        AM has diagnostics table for this.
+rbcs/                 - CNH to talk to steph
+runclock/             - runclock - CNH
+rw/                   - not sure - going to stay says JMC. quick IO calls
+                        JMC to write a quick note for that.
 sbo/                  - text in sbo_descruption.tex but not linked into
-                        part6
+                        part6 - CNH
 seaice/               - 6.5.2 - no equations, dimitris has promised some
 shap_filt/            - chapter 2, JM to check
 shelfice/             - nothing yet (martin?)
-solver/               - empty
+solver/               - empty (go away?)
 sphere/               - chapter 5 or 8 (PH to check)
-therm_seaice/         - empty
+therm_seaice/         - empty (go away?)
 thsice/               - 6.5.1 (JM to update?)
 timeave/              - retiring......
 zonal_filt/           - chapter 2 (JM to check)
 
-Possible for chap 7 - Daniels grafix/ stuff
-
-Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started.
-
-Figure 6.8 is missing
+list an expeiment which uses package? CNH
 
 6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 
  Figure 6.8 is missing
@@ -635,6 +613,13 @@
 andrea
 
 
-9. Model uses
+9. Publications using MITgcm --> "Previous Applications of MITgcm"
    Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...
    (check in support for more names)
+
+10. Under development
+
+
+Bibliography
+
+ tidy up from misc - .tex