320 |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
321 |
in code need to explain why cos()3/2 turns out to be |
in code need to explain why cos()3/2 turns out to be |
322 |
scaling (not cos()2) |
scaling (not cos()2) |
323 |
|
- need to reference the smag/leith section. |
324 |
|
|
325 |
2.13.6 Vertical dissipation |
2.13.6 Vertical dissipation |
326 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
- mention the implicit vertical viscosity option and ref to section 2.5 |
361 |
divide chapter 3 more clearly into 2 sections? |
divide chapter 3 more clearly into 2 sections? |
362 |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
(ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and |
363 |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
then 3.19 and 3.20 are informational again - rearrange subsections?) |
364 |
|
[DONE] |
365 |
|
|
366 |
3.1 - don't need a link to the outside of the document (remove it) |
3.1 - don't need a link to the outside of the document (remove it) |
367 |
- link to htdig is broken |
- link to htdig is broken |
446 |
|
|
447 |
offline - duplicate inputs, what is it, tidy up cfc v. |
offline - duplicate inputs, what is it, tidy up cfc v. |
448 |
other offline. JM thinks these need tidying up. |
other offline. JM thinks these need tidying up. |
449 |
|
|
450 |
|
Which of the following are which tutorial? |
451 |
|
! MLAdjust |
452 |
|
adjust_nlfs.cs-32x32x1 |
453 |
|
aim.5l_XZ_Equatorial_Slice |
454 |
|
biogeo |
455 |
|
aim.5l_zon-ave |
456 |
|
coupled_ucla |
457 |
|
cfc_offline |
458 |
|
exp3 |
459 |
|
global2x2_tot |
460 |
|
global1x1_tot |
461 |
|
global_ocean.cubed_wEXF |
462 |
|
global_with_CFC11 |
463 |
|
goz |
464 |
|
gop |
465 |
|
natl_box_obcs |
466 |
|
natl_box_forward |
467 |
|
spinup_optim |
468 |
|
tutorial_held_suarez_cs |
469 |
|
vero |
470 |
|
inverted_barometer |
471 |
|
global_ocean.cubed32x32x30 |
472 |
|
exp1 |
473 |
|
advect_cs |
474 |
|
dic_example |
475 |
|
fizhi-gridalt-hs |
476 |
|
global_ocean_pressure |
477 |
|
matrix_example |
478 |
|
exp4 |
479 |
|
solid-body.cs-32x32x1 |
480 |
|
cfc_example |
481 |
|
flt_example |
482 |
|
adjustment.cs-32x32x1 |
483 |
|
advect_xz |
484 |
|
rotating_tank |
485 |
|
ideal_2D_oce |
486 |
|
global_ocean.90x40x15 |
487 |
|
front_relax |
488 |
|
aim.5l_LatLon |
489 |
|
lab_sea |
490 |
|
hs94.cs-32x32x5 |
491 |
|
global_with_exf |
492 |
|
exp2 |
493 |
|
tidal_basin_2d |
494 |
|
fizhi-cs-32x32x10 |
495 |
|
exp5 |
496 |
|
global_ocean.cs32x15 |
497 |
|
OpenAD |
498 |
|
hs94.1x64x5 |
499 |
|
fizhi-cs-aqualev10 |
500 |
|
exp0 |
501 |
|
dome |
502 |
|
aim.5l_Equatorial_Channel |
503 |
|
aim.5l_cs |
504 |
|
hs94.128x64x5 |
505 |
|
prm |
506 |
|
carbon |
507 |
|
plume_on_slope |
508 |
|
natl_box_adjoint |
509 |
|
vermix |
510 |
|
cpl_aim+ocn |
511 |
|
global_ocean_ebm |
512 |
|
internal_wave |
513 |
|
advect_xy |
514 |
|
natl_box |
515 |
|
adjustment.128x64x1 |
516 |
|
|
517 |
>>>> From Ed |
>>>> From Ed |
518 |
|
|
519 |
Here are the remaining bits for Chap 4 : |
Here are the remaining bits for Chap 4 : |
520 |
|
|
|
- The grammar/flow could still use some work. Boo was an English |
|
|
major and has experience editing/proofing technical papers. I |
|
|
could print out a copy and ask her to read it and suggest |
|
|
improvements. |
|
|
|
|
521 |
- missing references (if you point me towards URLs, I'll add them |
- missing references (if you point me towards URLs, I'll add them |
522 |
to the bibliography): |
to the bibliography): |
523 |
\ref{ref hoe and hill, ecmwf} |
\ref{ref hoe and hill, ecmwf} |
538 |
|
|
539 |
the master package diagram does not appear in the document |
the master package diagram does not appear in the document |
540 |
|
|
|
pkg/ptracers doesn't seem to have any documentation (see packages list below) |
|
|
|
|
|
|
|
541 |
Master list of packages (add this to beginning of chap 6) |
Master list of packages (add this to beginning of chap 6) |
542 |
|
|
543 |
admtlm/ - autodiff (chapter 5) |
admtlm/ - autodiff (chapter 5) |
544 |
aim/ - retired |
aim/ - retired |
545 |
aim_compon_interf/ - 6.6 (no content yet) |
aim_compon_interf/ - 6.6 (no content yet)(Daniel + JM) |
546 |
aim_ocn_coupler/ - 6.6 (no content yet) |
aim_ocn_coupler/ - 6.6 (no content yet) |
547 |
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
548 |
atm_common/ - 6.6 (no content yet) |
atm_common/ - nothing in this package (6.4.1 related) |
549 |
autodiff/ - autodiff (chapter 5) |
autodiff/ - autodiff (chapter 5) |
550 |
bulk_force/ - 6.3.3 |
bulk_force/ - 6.3.3 |
551 |
cal/ - 6.3.5 |
cal/ - 6.3.5 |
552 |
cd_code/ - chapter 2 (JM check) |
cd_code/ - chapter 2 (JM check add a reference to paper, |
553 |
cfc/ - not sure |
mention parameter in data) |
554 |
chronos/ - AM to check |
cfc/ - not sure (CNH to talk to Steph and Helen) |
555 |
compon_communic/ - 6.6 (no content yet) |
chronos/ - AM to check (not being used - Andrea to kill it) |
556 |
|
compon_communic/ - 6.6 (no content yet)(Daniel + JM) |
557 |
cost/ - not sure, check with PH |
cost/ - not sure, check with PH |
558 |
ctrl/ - not sure, check with PH |
ctrl/ - not sure, check with PH |
559 |
debug/ - JM may do something in chapter 7 (utilities) |
debug/ - JM may do something in chapter 7 (utilities) |
560 |
diagnostics/ - 7.1 |
diagnostics/ - 7.1 |
561 |
dic/ - 6.7.2 |
dic/ - 6.7.2 |
562 |
ebm/ - not sure |
ebm/ - (check with PH) |
563 |
ecco/ - chapter 8 |
ecco/ - chapter 8 |
564 |
embed_files/ - add something to chapter 7 |
embed_files/ - add something to chapter 7 |
|
ex3/ - rename to exch3 |
|
565 |
exch2/ - 6.2.2 |
exch2/ - 6.2.2 |
566 |
exf/ - 6.3.4 |
exf/ - 6.3.4 |
567 |
fizhi/ - 6.4.3 |
fizhi/ - 6.4.3 |
568 |
flt/ - in chapter 2 (JM check) |
flt/ - (PH check) |
569 |
gchem/ - 6.7.1 |
gchem/ - 6.7.1 |
570 |
generic_advdiff/ - in chapter 2 (JM check) |
generic_advdiff/ - in chapter 2 (JM check) |
571 |
ggl90/ - nothing, (Martin?) |
ggl90/ - nothing, (Martin?) |
572 |
gmredi/ - in chapter 2 (JM check). also need |
gmredi/ - in chapter 2 (JM check). also need |
573 |
Ferrari & Mc tapering |
Ferrari & Mc transition zone stuff (Samar doing this) |
574 |
|
get dfer to read this |
575 |
grdchk/ - grdchk (chapter 5 - check with PH) |
grdchk/ - grdchk (chapter 5 - check with PH) |
576 |
gridalt/ - 6.2.4 |
gridalt/ - 6.2.4 |
577 |
kpp/ - 6.3.2 |
kpp/ - 6.3.2 |
578 |
land/ - 6.4.2 (not connected to code - JM to fix) |
land/ - 6.4.2 (not connected to code Rong's notes - JM to fix) |
579 |
matrix/ - Samar |
matrix/ - Samar |
580 |
mdsio/ - 7.3.1 |
mdsio/ - 7.3.1 |
581 |
mnc/ - 7.2.1 |
mnc/ - 7.2.1 |
584 |
mom_vecinv/ - in chapter 2 (JM check) |
mom_vecinv/ - in chapter 2 (JM check) |
585 |
monitor/ - 7.4 |
monitor/ - 7.4 |
586 |
my82/ - nothing, (martin?) |
my82/ - nothing, (martin?) |
587 |
obcs/ - 6.3 (needs a check) |
obcs/ - 6.3 (needs a check - ask PH to read) |
588 |
ocn_compon_interf/ - 6.6 (no content yet) |
ocn_compon_interf/ - 6.6 (no content yet) |
589 |
offline/ - nothing, tutorials that need work but no package section entry |
offline/ - nothing, tutorials that need work but no package section entry |
590 |
|
trivial to document (CNH to do) |
591 |
opps/ - nothing, (martin?) |
opps/ - nothing, (martin?) |
592 |
pp81/ - nothing, (martin?) |
pp81/ - nothing, (martin?) |
593 |
profiles/ - GAEL |
profiles/ - GAEL |
594 |
ptracers/ - JM + SD to write something |
ptracers/ - JM + SD + Martin to write something (nothing for this |
595 |
rbcs/ - talk to steph |
at the moment) |
596 |
runclock/ - runclock |
AM has diagnostics table for this. |
597 |
rw/ - not sure |
rbcs/ - CNH to talk to steph |
598 |
|
runclock/ - runclock - CNH |
599 |
|
rw/ - not sure - going to stay says JMC. quick IO calls |
600 |
sbo/ - text in sbo_descruption.tex but not linked into |
sbo/ - text in sbo_descruption.tex but not linked into |
601 |
part6 |
part6 |
602 |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
609 |
timeave/ - retiring...... |
timeave/ - retiring...... |
610 |
zonal_filt/ - chapter 2 (JM to check) |
zonal_filt/ - chapter 2 (JM to check) |
611 |
|
|
612 |
|
list an expeiment which uses package? CNH |
613 |
|
|
614 |
Possible for chap 7 - Daniels grafix/ stuff |
Possible for chap 7 - Daniels grafix/ stuff |
615 |
|
|
616 |
Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |
Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. |