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--- manual/manual_todo.txt 2006/04/06 20:03:45 1.10
+++ manual/manual_todo.txt 2006/04/06 20:04:27 1.11
@@ -352,6 +352,101 @@
JM
+
+>>>> From Andrea
+
+Chapter 3
+--------
+
+Almost all of the 'math mode' text is dropped down as subscripts
+
+divide chapter 3 more clearly into 2 sections?
+ (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and
+ then 3.19 and 3.20 are informational again - rearrange subsections?)
+
+3.1 - don't need a link to the outside of the document (remove it)
+ - link to htdig is broken
+
+3.2.1 - link at bottom to source code points to section 3.2.1
+ (ie, to itself) - link should point to cvs code archive
+
+3.2.2.1 - ('upgrading from an earlier version') belongs under
+ the cvs part, ie, should be 3.2.1.1
+
+3.3 - remove reference to 'diags' section under MITgcm
+ - remove reference to 'exe' and 'bin' sections also
+ (remove the .cvsignore file under these directories in cvs)
+ - add a 'jobs' section, and a description as examples of run scripts
+ - add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions
+ - under 'tools' add a reference to 'build_options'. refer to the 'optfiles'
+ - under 'tools' the adjoint points to section 5 - this is now section 8
+ (but should be a floating reference)
+ - under 'utils' add a reference to exch2 - stuff for different resolutions
+ - the description of the pkg section refers directly to
+ section 3. should be section 6 (actually should be a floating reference)
+
+3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10)
+3.4.1 - links to the following experiments don't exist or are broken:
+ exp2 - should link to section 3.9
+ hs94.cs-32x32x5 - link to section 3.12
+ add 'convection' to the list, link to section 3.13
+ add 'plume on slope` to the list, link to section 3.14
+ add '??' link to section 3.15
+ add 'dic_example on slope` to the list, link to section 3.16
+ add '??' link to section 3.17
+ add 'offline' and link to section 3.18
+ clean up others and make links where they are needed
+3.4.2 - text suggests to see section 2 for details about what is in the 'code'
+ and 'input' directories - should refer to the examples in this section
+ - add 'build' bullet - this is where the model is compiled and exectuable lives
+
+3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options
+ as the place where they live (add a link?)
+
+3.6.1 - Add some general 'approach' text - ie, output is controlled either by the
+ 'data' file in the input directory or by the data.[pkg name] file for any
+ package running. And there is some default behavior when the 'state' dumps
+ are written.
+3.6.1.2 - needs to be moved to inside section 3.6.2
+
+3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18)
+ underneath this one and leave the text for 3.7 in place
+
+All the 'overview' sections need some reference to the name of the experiment in
+the verification directory
+
+3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript
+ - is this experiment in the list from section 3.4???
+3.10.3.1 - refers to figures and equations, links are broken
+
+3.11.3.2 - line 43: link to equation is broken
+ - line 51-53: link to equation is broken
+ - there is some mess of text hanging around the end of this section. remove? reformat?
+
+3.12.4.1 - line 34 - link to equation is broken
+ - lines 60,61 - 1st (take out the 'r' in the superscript)
+
+3.13.2 - link to theta-equation is broken
+3.13.5.4 -- ALL of the bold links to variable names are broken
+ line 34: link to equation is broken
+
+3.15.1 - reference to 'fourth experiment' should be removed
+
+3.16.4 - strange formatting, presence of '>' symbols - remove them
+
+3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4
+3.17.3.1 - nothing filled in under file input/data - needs description
+
+3.18.2 - point to section 2 for details - need hyperlink
+
+3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true!
+ section 3.5 has the 'build' directory in the example
+
+3.20.1 - link to doc at end of section points to this section
+3.20.2 - link to doc at end of section points to this section
+
+ offline - duplicate inputs, what is it, tidy up cfc v.
+ other offline. JM thinks these need tidying up.
>>>> From Ed
Here are the remaining bits for Chap 4 :
@@ -475,101 +570,6 @@
andrea
->>>> From Andrea
-
-Chapter 3
---------
-
-Almost all of the 'math mode' text is dropped down as subscripts
-
-divide chapter 3 more clearly into 2 sections?
- (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and
- then 3.19 and 3.20 are informational again - rearrange subsections?)
-
-3.1 - don't need a link to the outside of the document (remove it)
- - link to htdig is broken
-
-3.2.1 - link at bottom to source code points to section 3.2.1
- (ie, to itself) - link should point to cvs code archive
-
-3.2.2.1 - ('upgrading from an earlier version') belongs under
- the cvs part, ie, should be 3.2.1.1
-
-3.3 - remove reference to 'diags' section under MITgcm
- - remove reference to 'exe' and 'bin' sections also
- (remove the .cvsignore file under these directories in cvs)
- - add a 'jobs' section, and a description as examples of run scripts
- - add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions
- - under 'tools' add a reference to 'build_options'. refer to the 'optfiles'
- - under 'tools' the adjoint points to section 5 - this is now section 8
- (but should be a floating reference)
- - under 'utils' add a reference to exch2 - stuff for different resolutions
- - the description of the pkg section refers directly to
- section 3. should be section 6 (actually should be a floating reference)
-
-3.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10)
-3.4.1 - links to the following experiments don't exist or are broken:
- exp2 - should link to section 3.9
- hs94.cs-32x32x5 - link to section 3.12
- add 'convection' to the list, link to section 3.13
- add 'plume on slope` to the list, link to section 3.14
- add '??' link to section 3.15
- add 'dic_example on slope` to the list, link to section 3.16
- add '??' link to section 3.17
- add 'offline' and link to section 3.18
- clean up others and make links where they are needed
-3.4.2 - text suggests to see section 2 for details about what is in the 'code'
- and 'input' directories - should refer to the examples in this section
- - add 'build' bullet - this is where the model is compiled and exectuable lives
-
-3.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options
- as the place where they live (add a link?)
-
-3.6.1 - Add some general 'approach' text - ie, output is controlled either by the
- 'data' file in the input directory or by the data.[pkg name] file for any
- package running. And there is some default behavior when the 'state' dumps
- are written.
-3.6.1.2 - needs to be moved to inside section 3.6.2
-
-3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18)
- underneath this one and leave the text for 3.7 in place
-
-All the 'overview' sections need some reference to the name of the experiment in
-the verification directory
-
-3.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript
- - is this experiment in the list from section 3.4???
-3.10.3.1 - refers to figures and equations, links are broken
-
-3.11.3.2 - line 43: link to equation is broken
- - line 51-53: link to equation is broken
- - there is some mess of text hanging around the end of this section. remove? reformat?
-
-3.12.4.1 - line 34 - link to equation is broken
- - lines 60,61 - 1st (take out the 'r' in the superscript)
-
-3.13.2 - link to theta-equation is broken
-3.13.5.4 -- ALL of the bold links to variable names are broken
- line 34: link to equation is broken
-
-3.15.1 - reference to 'fourth experiment' should be removed
-
-3.16.4 - strange formatting, presence of '>' symbols - remove them
-
-3.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4
-3.17.3.1 - nothing filled in under file input/data - needs description
-
-3.18.2 - point to section 2 for details - need hyperlink
-
-3.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true!
- section 3.5 has the 'build' directory in the example
-
-3.20.1 - link to doc at end of section points to this section
-3.20.2 - link to doc at end of section points to this section
-
- offline - duplicate inputs, what is it, tidy up cfc v.
- other offline. JM thinks these need tidying up.
-
9. Model uses
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...
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