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  Biblio        - EH3 | 
  Biblio        - EH3 | 
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 Rebuild and set to do cron build - DONE on hugo | 
 Rebuild and set to do cron build - DONE on hugo | 
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 To do | 
 To do | 
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 o HTML, scripts and front content | 
 o HTML, scripts and front content | 
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   - pick a URL | 
   - pick a URL:  mitgcm.org/r2  <-- EH3's preferred base URL | 
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     TBD | 
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   - mitgcm.org/r2_web_testing/latest | 
   - mitgcm.org/r2_web_testing/latest | 
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     o add another short-cut for quick download | 
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     o --DONE--  add another short-cut for quick download | 
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     o --DONE--  add another short-cut | 
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                   About | 
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                   Installation | 
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                   Contents | 
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                   Overview | 
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                   Tutorials (broken) | 
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                   Browse Code | 
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     o --DONE--  words on http://mitgcm.org/r2_web_testing/latest change to  | 
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     o --DONE--  finite-volume doesn't leap to FV figure | 
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| 64 | 
     o add another short-cut | 
     o -- DONE ??? --  have another go at pnmcrop et al. | 
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       About | 
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       Installation | 
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       Contents | 
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       Overview | 
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       Tutorials (broken) | 
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       Browse Code | 
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     o words on http://mitgcm.org/r2_web_testing/latest | 
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       change to  | 
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        "access on-line Auser manual/A and Atable of contents/A | 
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         and browse the Aoverview section/A" | 
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     o finite-volume doesn't leap to FV figure | 
          I've tried making a small change in latex2html which fixes | 
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          the oddball-lower-alignment issue that we were seeing with | 
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          most in-line expressions (that is, math embedded in text). | 
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          The fix results in some things being slightly raised but I | 
| 70 | 
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          thin this is more asthetically pleasing than being somewhat | 
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          lowered as before. --EH3 | 
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     o have another go at pnmcrop et al. | 
          To view the altered alignment, see: | 
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             http://eddy.csail.mit.edu/r2/latest/ | 
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     o Need an empty package as part of distribution. Check out atm_common | 
     o Need an empty package as part of distribution. Check out atm_common | 
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 o Latex    | 
 o Latex    | 
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     Chapter 1                 - CNH | 
     Chapter 1                 - CNH | 
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| 271 | 
 - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" | 
 - At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" | 
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   to stay closer to the code. | 
   to stay closer to the code. | 
| 273 | 
 - mention section 2.5 implicit-Time-stepping (for vertical viscosity) | 
 - mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE | 
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 2.3 linear free-surface:  | 
 2.3 linear free-surface:  | 
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 - add ref(+link) to S/R names: | 
 - add ref(+link) to S/R names: | 
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 - add ref(+link) to Crank-Nickelson section 2.9.1 | 
 - add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE | 
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| 279 | 
 2.4 Adams-Bashforth | 
 2.4 Adams-Bashforth | 
| 280 | 
 - add stability diagrams (I have some figures that I can put) | 
 - add stability diagrams (I have some figures that I can put) <- DONE | 
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 - add link for var. forcing_In_AB | 
 - add link for var. forcing_In_AB and epsil_AB <- half DONE | 
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 - add S/R link for S/R ADAMS_BASHFORTH2 | 
 - add S/R link for S/R ADAMS_BASHFORTH2 <-DONE | 
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 2.5 Implicit time-stepping  | 
 2.5 Implicit time-stepping  | 
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 - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R | 
 - add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R | 
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 Almost all of the 'math mode' text is dropped down as subscripts | 
 Almost all of the 'math mode' text is dropped down as subscripts | 
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 3.10.3.1 - refers to figures and equations, links are broken | 
 3.11.3.1 - refers to figures and equations, links are broken | 
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 3.11.3.2 - line 43: link to equation is broken | 
 3.12.3.2 - line 43: link to equation is broken | 
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          - line 51-53: link to equation is broken | 
          - line 51-53: link to equation is broken | 
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          - there is some mess of text hanging around the end of this section. remove? reformat? | 
          - there is some mess of text hanging around the end of this section. remove? reformat? | 
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| 410 | 
 3.12.4.1 - line 34 - link to equation is broken | 
 3.13.4.1 - line 34 - link to equation is broken | 
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          - lines 60,61 - 1st (take out the 'r' in the superscript) | 
          - lines 60,61 - 1st (take out the 'r' in the superscript) | 
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| 413 | 
 3.13.2 - link to theta-equation is broken | 
 3.14.2 - link to theta-equation is broken | 
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 3.13.5.4 -- ALL of the bold links to variable names are broken | 
 3.14.5.4 -- ALL of the bold links to variable names are broken | 
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             line 34: link to equation is broken | 
             line 34: link to equation is broken | 
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 >>>> From Ed | 
 >>>> From Ed | 
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| 519 | 
 =====  Chapter 7  =====  [EH3 editing] : | 
 =====  Chapter 7  =====  [EH3 editing] : | 
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| 521 | 
 7.1.x - JMC: please add description of: | 
  + JMC: please add description of: | 
| 522 | 
         - diagstat | 
         - diagstat | 
| 523 | 
         - new temporal averaging feature | 
         - new temporal averaging feature | 
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| 525 | 
 7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) | 
  + add Graphix to the list of stuff in utils/matlab (Daniel) | 
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  + get bathymetry pre-processing stuff from Patrick and then describe it | 
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| 529 | 
 7.5.2 - get bathymetry pre-processing stuff from Patrick | 
  + add something on spgrid mesh generator | 
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         and then describe it | 
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| 531 | 
 add something on spgrid mesh generator (maybe)? | 
  + add in gmaze PV calculation scripts plus write up on how it is calculated | 
| 532 | 
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      http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/ | 
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| 535 | 
 andrea | 
 andrea |