/[MITgcm]/manual/manual_todo.txt

Diff of /manual/manual_todo.txt

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-revision 1.39 by jmc,
Wed Jun 28 16:27:02 2006 UTC
+revision 1.43 by molod,
Wed Jun 28 19:03:11 2006 UTC
 Line 391 
 Chapter 3
  Almost all of the 'math mode' text is dropped down as subscripts
-.1 - don't need a link to the outside of the document (remove it)
+.11.3.1 - refers to figures and equations, links are broken
-     - link to htdig is broken
-.2.1 - link at bottom to source code points to section 3.2.1
+.12.3.2 - line 43: link to equation is broken
-    (ie, to itself) - link should point to cvs code archive
-.2.2.1  - ('upgrading from an earlier version') belongs under
-       the cvs part, ie, should be 3.2.1.1
-.3 - remove reference to 'diags' section under MITgcm
-     - remove reference to 'exe' and 'bin' sections also
-       (remove the .cvsignore file under these directories in cvs)
-     - add a 'jobs' section, and a description as examples of run scripts
-     - add 'lsopt', 'optim' and 'tutorial examples' with brief descriptions
-     - under 'tools' add a reference to 'build_options'. refer to the 'optfiles'
-     - under 'tools' the adjoint points to section 5 - this is now section 8
-       (but should be a floating reference)
-     - under 'utils' add a reference to exch2 - stuff for different resolutions
-     - the description of the pkg section refers directly to
-       section 3. should be section 6 (actually should be a floating reference)
-.4 - refer to sections 3.8 - 3.18 (now says 3.8 - 3.10)
-.4.1 - links to the following experiments don't exist or are broken:
-           exp2 - should link to section 3.9
-           hs94.cs-32x32x5 - link to section 3.12
-           add 'convection' to the list, link to section 3.13
-           add 'plume on slope` to the list, link to section 3.14
-           add '??' link to section 3.15
-           add 'dic_example on slope` to the list, link to section 3.16
-           add '??' link to section 3.17
-           add 'offline' and link to section 3.18
-           clean up others and make links where they are needed
-.4.2 - text suggests to see section 2 for details about what is in the 'code'
-         and 'input' directories - should refer to the examples in this section
-       - add 'build' bullet - this is where the model is compiled and exectuable lives
-.5 - add some little text when talking about 'optfiles' to refer to the tools/build_options
-       as the place where they live (add a link?)
-.6.1 - Add some general 'approach' text - ie, output is controlled either by the
-         'data' file in the input directory or by the data.[pkg name] file for any
-         package running. And there is some default behavior when the 'state' dumps
-         are written.
-.6.1.2 - needs to be moved to inside section 3.6.2
- All the 'overview' sections need some reference to the name of the experiment in
- the verification directory
-.10 - in title, 4 degrees - degree symbol is a subscript, not a superscript
-      - is this experiment in the list from section 3.4???
-.10.3.1 - refers to figures and equations, links are broken
-.11.3.2 - line 43: link to equation is broken
           - line 51-53: link to equation is broken
           - there is some mess of text hanging around the end of this section. remove? reformat?
-.12.4.1 - line 34 - link to equation is broken
+.13.4.1 - line 34 - link to equation is broken
           - lines 60,61 - 1st (take out the 'r' in the superscript)
-.13.2 - link to theta-equation is broken
+.14.2 - link to theta-equation is broken
-.13.5.4 -- ALL of the bold links to variable names are broken
+.14.5.4 -- ALL of the bold links to variable names are broken
              line 34: link to equation is broken
-.15.1 - reference to 'fourth experiment' should be removed
-.16.4 - strange formatting, presence of '>' symbols - remove them
-.17.3 - unknown verification directory pointed to - also: no link from list in sec 3.4
-.17.3.1 - nothing filled in under file input/data - needs description
-.18.2 - point to section 2 for details - need hyperlink
-.19.1 - text (2 places) says that section 3.5 called for compile in 'input' directory - not true!
-          section 3.5 has the 'build' directory in the example
-.20.1 - link to doc at end of section points to this section
-.20.2 - link to doc at end of section points to this section
-      offline - duplicate inputs, what is it, tidy up cfc v.
-                other offline. JM thinks these need tidying up.
- Which of the following are which tutorial?
- adjustment.128x64x1
- adjustment.cs-32x32x1
- advect_cs
- advect_xy
- advect_xz
- aim.5l_cs
- aim.5l_Equatorial_Channel
- aim.5l_LatLon
- biogeo
- bottom_ctrl_5x5
- cfc_example
- cpl_aim+ocn
- dome
- exp2
- exp4
- exp5
- fizhi-cs-32x32x10
- fizhi-cs-aqualev20
- fizhi-gridalt-hs
- flt_example
- front_relax
- global1x1_tot
- global2x2_tot
- global_ocean.90x40x15
- global_ocean.cs32x15
- global_ocean.cubed32x32x30
- global_ocean_ebm
- global_with_exf
- hs94.128x64x5
- hs94.1x64x5
- hs94.cs-32x32x5
- ideal_2D_oce
- internal_wave
- inverted_barometer
- lab_sea
- matrix_example
- MLAdjust
- natl_box
- natl_box_adjoint
- OpenAD
- rotating_tank
- solid-body.cs-32x32x1
- tidal_basin_2d
- tutorial_baroclinic_gyre
- tutorial_barotropic_gyre
- tutorial_cfc_offline
- tutorial_deep_convection
- tutorial_global_oce_biogeo
- tutorial_global_oce_in_p
- tutorial_global_oce_latlon
- tutorial_global_oce_optim
- tutorial_held_suarez_cs
- tutorial_offline
- tutorial_plume_on_slope
- tutorial_tracer_adjsens
- vermix
  >>>> From Ed
  Here are the remaining bits for Chap 4 :

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