/[MITgcm]/manual/manual_todo.txt
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revision 1.16 by cnh, Thu Apr 6 20:34:06 2006 UTC revision 1.31 by jmc, Mon Jun 26 00:41:02 2006 UTC
# Line 25  o HTML, scripts and front content Line 25  o HTML, scripts and front content
25        Tutorials (broken)        Tutorials (broken)
26        Browse Code        Browse Code
27    
     o mitgcm.org (front content) [DONE]  
       Get Code (where does this go to?)  
       get rid of * CVS current bullet  
       make HTML-enabled CVS code browser leap to MITgcm/MITgcm  
   
     o authors  
       John, Alistair, Jean-Michel, Patrick, Andrea, Steph, Helen,  
       Martin, Baylor, Dimitris, David, Ed, Mick, Chris, Constantinos,  
       Gael - others?  
   
28      o words on http://mitgcm.org/r2_web_testing/latest      o words on http://mitgcm.org/r2_web_testing/latest
29        change to        change to
30         "access on-line Auser manual/A and Atable of contents/A         "access on-line Auser manual/A and Atable of contents/A
# Line 339  in content: Horizontal Dissipation: 2 ti Line 329  in content: Horizontal Dissipation: 2 ti
329    
330  2.16 & 2.17 & 2.18 :  2.16 & 2.17 & 2.18 :
331   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options   - add 1rst Order upwind option & DST-2 (Lax-Wendroff) options
332     - fix equations 2.202 & 2.203 (thanks to Martin)
333    
334  2.20.2 mercator, non-dimensional Equations:  2.20.2 mercator, non-dimensional Equations:
335  - does not use std notation  - does not use std notation
# Line 358  Chapter 3 Line 349  Chapter 3
349    
350  Almost all of the 'math mode' text is dropped down as subscripts  Almost all of the 'math mode' text is dropped down as subscripts
351    
 divide chapter 3 more clearly into 2 sections?  
    (ie, 3.1-3.6 are more informational, 3.8- 3.18 are examples, and  
     then 3.19 and 3.20 are informational again - rearrange subsections?)  
 [DONE]  
   
352  3.1 - don't need a link to the outside of the document (remove it)  3.1 - don't need a link to the outside of the document (remove it)
353      - link to htdig is broken      - link to htdig is broken
354    
# Line 408  divide chapter 3 more clearly into 2 sec Line 394  divide chapter 3 more clearly into 2 sec
394          are written.          are written.
395  3.6.1.2 - needs to be moved to inside section 3.6.2  3.6.1.2 - needs to be moved to inside section 3.6.2
396    
 3.7 - this section is superfluous - remove it -OR- put the tutorial sections (3.8-3.18)  
       underneath this one and leave the text for 3.7 in place  
   
397  All the 'overview' sections need some reference to the name of the experiment in  All the 'overview' sections need some reference to the name of the experiment in
398  the verification directory  the verification directory
399    
# Line 448  the verification directory Line 431  the verification directory
431                 other offline. JM thinks these need tidying up.                 other offline. JM thinks these need tidying up.
432    
433  Which of the following are which tutorial?  Which of the following are which tutorial?
434  ! MLAdjust  adjustment.128x64x1
 adjust_nlfs.cs-32x32x1  
 aim.5l_XZ_Equatorial_Slice  
 biogeo  
 aim.5l_zon-ave  
 coupled_ucla  
 cfc_offline  
 exp3  
 global2x2_tot  
 global1x1_tot  
 global_ocean.cubed_wEXF  
 global_with_CFC11  
 goz  
 gop  
 natl_box_obcs  
 natl_box_forward  
 spinup_optim  
 tutorial_held_suarez_cs  
 vero  
 inverted_barometer  
 global_ocean.cubed32x32x30  
 exp1  
 advect_cs  
 dic_example  
 fizhi-gridalt-hs  
 global_ocean_pressure  
 matrix_example  
 exp4  
 solid-body.cs-32x32x1  
 cfc_example  
 flt_example  
435  adjustment.cs-32x32x1  adjustment.cs-32x32x1
436    advect_cs
437    advect_xy
438  advect_xz  advect_xz
439  rotating_tank  aim.5l_cs
440  ideal_2D_oce  aim.5l_Equatorial_Channel
 global_ocean.90x40x15  
 front_relax  
441  aim.5l_LatLon  aim.5l_LatLon
442  lab_sea  biogeo
443  hs94.cs-32x32x5  bottom_ctrl_5x5
444  global_with_exf  cfc_example
445    cpl_aim+ocn
446    dome
447  exp2  exp2
448  tidal_basin_2d  exp4
 fizhi-cs-32x32x10  
449  exp5  exp5
450    fizhi-cs-32x32x10
451    fizhi-cs-aqualev20
452    fizhi-gridalt-hs
453    flt_example
454    front_relax
455    global1x1_tot
456    global2x2_tot
457    global_ocean.90x40x15
458  global_ocean.cs32x15  global_ocean.cs32x15
459  OpenAD  global_ocean.cubed32x32x30
 hs94.1x64x5  
 fizhi-cs-aqualev10  
 exp0  
 dome  
 aim.5l_Equatorial_Channel  
 aim.5l_cs  
 hs94.128x64x5  
 prm  
 carbon  
 plume_on_slope  
 natl_box_adjoint  
 vermix  
 cpl_aim+ocn  
460  global_ocean_ebm  global_ocean_ebm
461    global_with_exf
462    hs94.128x64x5
463    hs94.1x64x5
464    hs94.cs-32x32x5
465    ideal_2D_oce
466  internal_wave  internal_wave
467  advect_xy  inverted_barometer
468    lab_sea
469    matrix_example
470    MLAdjust
471  natl_box  natl_box
472  adjustment.128x64x1  natl_box_adjoint
473    OpenAD
474    rotating_tank
475    solid-body.cs-32x32x1
476    tidal_basin_2d
477    tutorial_baroclinic_gyre
478    tutorial_barotropic_gyre
479    tutorial_cfc_offline
480    tutorial_deep_convection
481    tutorial_global_oce_biogeo
482    tutorial_global_oce_in_p
483    tutorial_global_oce_latlon
484    tutorial_global_oce_optim
485    tutorial_held_suarez_cs
486    tutorial_offline
487    tutorial_plume_on_slope
488    tutorial_tracer_adjsens
489    vermix
490    
491  >>>> From Ed  >>>> From Ed
492    
# Line 538  Chapter 6 Line 512  Chapter 6
512    
513     the master package diagram does not appear in the document     the master package diagram does not appear in the document
514    
    pkg/ptracers doesn't seem to have any documentation (see packages list below)  
                 martin volunteered - get martin to ask steph  
   
   
515  Master list of packages (add this to beginning of chap 6)  Master list of packages (add this to beginning of chap 6)
516    
517  admtlm/               - autodiff (chapter 5)  admtlm/               - autodiff (chapter 5)
# Line 566  dic/                  - 6.7.2 Line 536  dic/                  - 6.7.2
536  ebm/                  - (check with PH)  ebm/                  - (check with PH)
537  ecco/                 - chapter 8  ecco/                 - chapter 8
538  embed_files/          - add something to chapter 7  embed_files/          - add something to chapter 7
 ex3/                  - move to contrib (EH)  
539  exch2/                - 6.2.2  exch2/                - 6.2.2
540  exf/                  - 6.3.4  exf/                  - 6.3.4
541  fizhi/                - 6.4.3  fizhi/                - 6.4.3
542  flt/                  - in chapter 2 (JM check)  flt/                  - (PH check)
543  gchem/                - 6.7.1  gchem/                - 6.7.1
544  generic_advdiff/      - in chapter 2 (JM check)  generic_advdiff/      - in chapter 2 (JM check)
545  ggl90/                - nothing, (Martin?)  ggl90/                - nothing, (Martin?)
546  gmredi/               - in chapter 2 (JM check). also need  gmredi/               - in chapter 2 (JM check). also need
547                          Ferrari & Mc tapering                          Ferrari & Mc transition zone stuff (Samar doing this)
548                            get dfer to read this
549  grdchk/               - grdchk (chapter 5 - check with PH)  grdchk/               - grdchk (chapter 5 - check with PH)
550  gridalt/              - 6.2.4  gridalt/              - 6.2.4
551  kpp/                  - 6.3.2  kpp/                  - 6.3.2
552  land/                 - 6.4.2 (not connected to code - JM to fix)  land/                 - 6.4.2 (not connected to code Rong's notes - JM to fix)
553  matrix/               - Samar  matrix/               - Samar
554  mdsio/                - 7.3.1  mdsio/                - 7.3.1
555  mnc/                  - 7.2.1  mnc/                  - 7.2.1
# Line 588  mom_fluxform/         - in chapter 2 (JM Line 558  mom_fluxform/         - in chapter 2 (JM
558  mom_vecinv/           - in chapter 2 (JM check)  mom_vecinv/           - in chapter 2 (JM check)
559  monitor/              - 7.4  monitor/              - 7.4
560  my82/                 - nothing, (martin?)  my82/                 - nothing, (martin?)
561  obcs/                 - 6.3 (needs a check)  obcs/                 - 6.3 (needs a check - ask PH to read)
562  ocn_compon_interf/    - 6.6 (no content yet)  ocn_compon_interf/    - 6.6 (no content yet)
563  offline/              - nothing, tutorials that need work but no package   section entry  offline/              - nothing, tutorials that need work but no package   section entry
564                            trivial to document (CNH to do)
565  opps/                 - nothing, (martin?)  opps/                 - nothing, (martin?)
566  pp81/                 - nothing, (martin?)  pp81/                 - nothing, (martin?)
567  profiles/             - GAEL  profiles/             - GAEL
568  ptracers/             - JM + SD to write something  ptracers/             - JM + SD + Martin to write something (nothing for this
569  rbcs/                 - talk to steph                            at the moment)
570  runclock/             - runclock                          AM has diagnostics table for this.
571  rw/                   - not sure  rbcs/                 - CNH to talk to steph
572    runclock/             - runclock - CNH
573    rw/                   - not sure - going to stay says JMC. quick IO calls
574                            JMC to write a quick note for that.
575  sbo/                  - text in sbo_descruption.tex but not linked into  sbo/                  - text in sbo_descruption.tex but not linked into
576                          part6                          part6 - CNH
577  seaice/               - 6.5.2 - no equations, dimitris has promised some  seaice/               - 6.5.2 - no equations, dimitris has promised some
578  shap_filt/            - chapter 2, JM to check  shap_filt/            - chapter 2, JM to check
579  shelfice/             - nothing yet (martin?)  shelfice/             - nothing yet (martin?)
580  solver/               - empty  solver/               - empty (go away?)
581  sphere/               - chapter 5 or 8 (PH to check)  sphere/               - chapter 5 or 8 (PH to check)
582  therm_seaice/         - empty  therm_seaice/         - empty (go away?)
583  thsice/               - 6.5.1 (JM to update?)  thsice/               - 6.5.1 (JM to update?)
584  timeave/              - retiring......  timeave/              - retiring......
585  zonal_filt/           - chapter 2 (JM to check)  zonal_filt/           - chapter 2 (JM to check)
586    
587  Possible for chap 7 - Daniels grafix/ stuff  list an expeiment which uses package? CNH
   
 Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started.  
   
 Figure 6.8 is missing  
588    
589  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997  6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997
590   Figure 6.8 is missing   Figure 6.8 is missing
# Line 635  to do list for chap 7: Line 605  to do list for chap 7:
605  andrea  andrea
606    
607    
608  9. Model uses  9. Publications using MITgcm --> "Previous Applications of MITgcm"
609     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...     Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc...
610     (check in support for more names)     (check in support for more names)
611    
612    10. Under development
613    
614    
615    Bibliography
616    
617     tidy up from misc - .tex
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