| 1 |  | Editors | 
| 2 |  |  | 
| 3 |  | Overall       - JM, AM, PH, CNH, EH3 | 
| 4 |  |  | 
| 5 |  | Front content - EH3 | 
| 6 |  |  | 
| 7 |  | Chapter 1     - CNH | 
| 8 |  |  | 
| 9 |  | Chapter 2     - JMC | 
| 10 |  |  | 
| 11 |  | Chapter 3     -  AM | 
| 12 |  |  | 
| 13 |  | Chapter 4     - CNH | 
| 14 |  |  | 
| 15 |  | Chapter 5     -  PH | 
| 16 |  |  | 
| 17 |  | Chapter 6     -  AM | 
| 18 |  |  | 
| 19 |  | Chapter 7     - EH3 | 
| 20 |  |  | 
| 21 |  | Chapter 8     -  PH | 
| 22 |  |  | 
| 23 |  | Chapter 9     - CNH (Applications) | 
| 24 |  |  | 
| 25 |  | Chapter 10    - JMC (Under development chapter) | 
| 26 |  |  | 
| 27 |  | Biblio        - EH3 | 
| 28 |  |  | 
| 29 | Rebuild and set to do cron build - DONE on hugo | Rebuild and set to do cron build - DONE on hugo | 
| 30 |  |  | 
| 31 | To do | To do | 
| 36 | Add an "Under development, chapter" - shortish description of what | Add an "Under development, chapter" - shortish description of what | 
| 37 | is available (last chapter) | is available (last chapter) | 
| 38 |  |  | 
| 39 |  | - add in example latex for formatting author names in different pieces. | 
| 40 |  | this aknowledges peoples contributions and gives ref for who | 
| 41 |  | to talk to. | 
| 42 |  |  | 
| 43 | o HTML, scripts and front content | o HTML, scripts and front content | 
| 44 |  |  | 
| 88 |  |  | 
| 89 | o List of key papers needs to be updated and reformatted | o List of key papers needs to be updated and reformatted | 
| 90 |  |  | 
|  |  |  | 
| 91 | o Global atmosphere: `Held Suarez', | o Global atmosphere: `Held Suarez', | 
| 92 | update Adcroft reference | update Adcroft reference | 
| 93 | fix up ingrid link and frame (ingrid movies seem to be broken?) | fix up ingrid link and frame (ingrid movies seem to be broken?) | 
| 367 | (e.g changing the tile to: | (e.g changing the tile to: | 
| 368 | - talk to Baylor | - talk to Baylor | 
| 369 | Appendix: non-dimensional Equations on Spherical-Polar grid.) | Appendix: non-dimensional Equations on Spherical-Polar grid.) | 
| 370 |  |  | 
| 371 |  |  | 
| 372 |  | Diagrams of grid locations etc.... and what variables and output files | 
| 373 |  | and/or netcdf variable names are not very easy to figure out and follow. | 
| 374 |  | It would be good to redo and extend these diagrams and align with GRID.h | 
| 375 |  | content. | 
| 376 |  |  | 
| 377 |  |  | 
| 378 | JM | JM | 
| 467 | other offline. JM thinks these need tidying up. | other offline. JM thinks these need tidying up. | 
| 468 |  |  | 
| 469 | Which of the following are which tutorial? | Which of the following are which tutorial? | 
| 470 | ! MLAdjust | adjustment.128x64x1 | 
|  | adjust_nlfs.cs-32x32x1 |  | 
|  | aim.5l_XZ_Equatorial_Slice |  | 
|  | biogeo |  | 
|  | aim.5l_zon-ave |  | 
|  | coupled_ucla |  | 
|  | cfc_offline |  | 
|  | exp3 |  | 
|  | global2x2_tot |  | 
|  | global1x1_tot |  | 
|  | global_ocean.cubed_wEXF |  | 
|  | global_with_CFC11 |  | 
|  | goz |  | 
|  | gop |  | 
|  | natl_box_obcs |  | 
|  | natl_box_forward |  | 
|  | spinup_optim |  | 
|  | tutorial_held_suarez_cs |  | 
|  | vero |  | 
|  | inverted_barometer |  | 
|  | global_ocean.cubed32x32x30 |  | 
|  | exp1 |  | 
|  | advect_cs |  | 
|  | dic_example |  | 
|  | fizhi-gridalt-hs |  | 
|  | global_ocean_pressure |  | 
|  | matrix_example |  | 
|  | exp4 |  | 
|  | solid-body.cs-32x32x1 |  | 
|  | cfc_example |  | 
|  | flt_example |  | 
| 471 | adjustment.cs-32x32x1 | adjustment.cs-32x32x1 | 
| 472 |  | advect_cs | 
| 473 |  | advect_xy | 
| 474 | advect_xz | advect_xz | 
| 475 | rotating_tank | aim.5l_cs | 
| 476 | ideal_2D_oce | aim.5l_Equatorial_Channel | 
|  | global_ocean.90x40x15 |  | 
|  | front_relax |  | 
| 477 | aim.5l_LatLon | aim.5l_LatLon | 
| 478 | lab_sea | biogeo | 
| 479 | hs94.cs-32x32x5 | bottom_ctrl_5x5 | 
| 480 | global_with_exf | cfc_example | 
| 481 |  | cpl_aim+ocn | 
| 482 |  | dome | 
| 483 | exp2 | exp2 | 
| 484 | tidal_basin_2d | exp4 | 
|  | fizhi-cs-32x32x10 |  | 
| 485 | exp5 | exp5 | 
| 486 |  | fizhi-cs-32x32x10 | 
| 487 |  | fizhi-cs-aqualev20 | 
| 488 |  | fizhi-gridalt-hs | 
| 489 |  | flt_example | 
| 490 |  | front_relax | 
| 491 |  | global1x1_tot | 
| 492 |  | global2x2_tot | 
| 493 |  | global_ocean.90x40x15 | 
| 494 | global_ocean.cs32x15 | global_ocean.cs32x15 | 
| 495 | OpenAD | global_ocean.cubed32x32x30 | 
|  | hs94.1x64x5 |  | 
|  | fizhi-cs-aqualev10 |  | 
|  | exp0 |  | 
|  | dome |  | 
|  | aim.5l_Equatorial_Channel |  | 
|  | aim.5l_cs |  | 
|  | hs94.128x64x5 |  | 
|  | prm |  | 
|  | carbon |  | 
|  | plume_on_slope |  | 
|  | natl_box_adjoint |  | 
|  | vermix |  | 
|  | cpl_aim+ocn |  | 
| 496 | global_ocean_ebm | global_ocean_ebm | 
| 497 |  | global_with_exf | 
| 498 |  | hs94.128x64x5 | 
| 499 |  | hs94.1x64x5 | 
| 500 |  | hs94.cs-32x32x5 | 
| 501 |  | ideal_2D_oce | 
| 502 | internal_wave | internal_wave | 
| 503 | advect_xy | inverted_barometer | 
| 504 |  | lab_sea | 
| 505 |  | matrix_example | 
| 506 |  | MLAdjust | 
| 507 | natl_box | natl_box | 
| 508 | adjustment.128x64x1 | natl_box_adjoint | 
| 509 |  | OpenAD | 
| 510 |  | rotating_tank | 
| 511 |  | solid-body.cs-32x32x1 | 
| 512 |  | tidal_basin_2d | 
| 513 |  | tutorial_baroclinic_gyre | 
| 514 |  | tutorial_barotropic_gyre | 
| 515 |  | tutorial_cfc_offline | 
| 516 |  | tutorial_deep_convection | 
| 517 |  | tutorial_global_oce_biogeo | 
| 518 |  | tutorial_global_oce_in_p | 
| 519 |  | tutorial_global_oce_latlon | 
| 520 |  | tutorial_global_oce_optim | 
| 521 |  | tutorial_held_suarez_cs | 
| 522 |  | tutorial_offline | 
| 523 |  | tutorial_plume_on_slope | 
| 524 |  | tutorial_tracer_adjsens | 
| 525 |  | vermix | 
| 526 |  |  | 
| 527 | >>>> From Ed | >>>> From Ed | 
| 528 |  |  | 
| 626 | Figure 6.8 is missing | Figure 6.8 is missing | 
| 627 |  |  | 
| 628 |  |  | 
| 629 | >>>> From Andrea | =====  Chapter 7  =====  [EH3 editing] : | 
| 630 |  |  | 
| 631 | to do list for chap 7: | 7.1.x - JMC: please add description of: | 
| 632 |  | - diagstat | 
| 633 |  | - new temporal averaging feature | 
| 634 |  |  | 
| 635 |  | 7.5.1 - add Graphix to the list of stuff in utils/matlab (Daniel) | 
| 636 |  |  | 
| 637 | 7.1.1 - links to section 7.1.4: the text of the first one should read "see MITgcm Kernel Diagnostics Menu" | 7.5.2 - get bathymetry pre-processing stuff from Patrick | 
| 638 | the links are pointing to the proper place | and then describe it | 
| 639 |  |  | 
| 640 | 7.5.1 - add Graphix to the list of stuff in utils/matlab | add something on spgrid mesh generator (maybe)? | 
|  | 7.5.2 - empty |  | 
| 641 |  |  | 
| 642 |  |  | 
| 643 | andrea | andrea | 
| 649 |  |  | 
| 650 | 10. Under development | 10. Under development | 
| 651 |  |  | 
| 652 |  | Constantinos LCML | 
| 653 |  |  | 
| 654 |  |  | 
| 655 | Bibliography | Bibliography | 
| 656 |  |  |