| 538 |  |  | 
| 539 | the master package diagram does not appear in the document | the master package diagram does not appear in the document | 
| 540 |  |  | 
|  | pkg/ptracers doesn't seem to have any documentation (see packages list below) |  | 
|  | martin volunteered - get martin to ask steph |  | 
|  |  |  | 
|  |  |  | 
| 541 | Master list of packages (add this to beginning of chap 6) | Master list of packages (add this to beginning of chap 6) | 
| 542 |  |  | 
| 543 | admtlm/               - autodiff (chapter 5) | admtlm/               - autodiff (chapter 5) | 
| 584 | mom_vecinv/           - in chapter 2 (JM check) | mom_vecinv/           - in chapter 2 (JM check) | 
| 585 | monitor/              - 7.4 | monitor/              - 7.4 | 
| 586 | my82/                 - nothing, (martin?) | my82/                 - nothing, (martin?) | 
| 587 | obcs/                 - 6.3 (needs a check) | obcs/                 - 6.3 (needs a check - ask PH to read) | 
| 588 | ocn_compon_interf/    - 6.6 (no content yet) | ocn_compon_interf/    - 6.6 (no content yet) | 
| 589 | offline/              - nothing, tutorials that need work but no package   section entry | offline/              - nothing, tutorials that need work but no package   section entry | 
| 590 |  | trivial to document (CNH to do) | 
| 591 | opps/                 - nothing, (martin?) | opps/                 - nothing, (martin?) | 
| 592 | pp81/                 - nothing, (martin?) | pp81/                 - nothing, (martin?) | 
| 593 | profiles/             - GAEL | profiles/             - GAEL | 
| 594 | ptracers/             - JM + SD to write something | ptracers/             - JM + SD + Martin to write something (nothing for this | 
| 595 | rbcs/                 - talk to steph | at the moment) | 
| 596 | runclock/             - runclock | AM has diagnostics table for this. | 
| 597 | rw/                   - not sure | rbcs/                 - CNH to talk to steph | 
| 598 |  | runclock/             - runclock - CNH | 
| 599 |  | rw/                   - not sure - going to stay says JMC. quick IO calls | 
| 600 |  | JMC to write a quick note for that. | 
| 601 | sbo/                  - text in sbo_descruption.tex but not linked into | sbo/                  - text in sbo_descruption.tex but not linked into | 
| 602 | part6 | part6 - CNH | 
| 603 | seaice/               - 6.5.2 - no equations, dimitris has promised some | seaice/               - 6.5.2 - no equations, dimitris has promised some | 
| 604 | shap_filt/            - chapter 2, JM to check | shap_filt/            - chapter 2, JM to check | 
| 605 | shelfice/             - nothing yet (martin?) | shelfice/             - nothing yet (martin?) | 
| 606 | solver/               - empty | solver/               - empty (go away?) | 
| 607 | sphere/               - chapter 5 or 8 (PH to check) | sphere/               - chapter 5 or 8 (PH to check) | 
| 608 | therm_seaice/         - empty | therm_seaice/         - empty (go away?) | 
| 609 | thsice/               - 6.5.1 (JM to update?) | thsice/               - 6.5.1 (JM to update?) | 
| 610 | timeave/              - retiring...... | timeave/              - retiring...... | 
| 611 | zonal_filt/           - chapter 2 (JM to check) | zonal_filt/           - chapter 2 (JM to check) | 
| 612 |  |  | 
| 613 | Possible for chap 7 - Daniels grafix/ stuff | list an expeiment which uses package? CNH | 
| 614 |  |  | 
| 615 | Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. | [DONE]Need to get packages to contain their available diagnostics (i.e. calls to DIAGNOSTICS_ADD). these are listed in stdout when pacakages are started. | 
|  |  |  | 
|  | Figure 6.8 is missing |  | 
| 616 |  |  | 
| 617 | 6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 | 6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 | 
| 618 | Figure 6.8 is missing | Figure 6.8 is missing | 
| 633 | andrea | andrea | 
| 634 |  |  | 
| 635 |  |  | 
| 636 | 9. Model uses | 9. Publications using MITgcm | 
| 637 | Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... | Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... | 
| 638 | (check in support for more names) | (check in support for more names) | 
| 639 |  |  | 
| 640 |  | 10. Under development | 
| 641 |  |  | 
| 642 |  |  | 
| 643 |  | Bibliography | 
| 644 |  |  | 
| 645 |  | tidy up from misc - .tex |