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cnh |
1.33 |
Editors |
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Overall - JM, AM, PH, CNH, EH3 |
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Front content - EH3 |
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Chapter 1 - CNH |
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Chapter 2 - JMC |
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Chapter 3 - AM |
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Chapter 4 - CNH |
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Chapter 5 - PH |
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Chapter 6 - AM |
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Chapter 7 - EH3 |
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Chapter 8 - PH |
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Chapter 9 - CNH (Applications) |
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Chapter 10 - JMC (Under development chapter) |
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Biblio - EH3 |
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edhill |
1.46 |
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cnh |
1.4 |
Rebuild and set to do cron build - DONE on hugo |
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cnh |
1.1 |
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To do |
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- where to put under development links? |
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cnh |
1.6 |
JMC would like to have some mention of unfinished things (checked in |
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but not that tested e.g. AB3) |
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cnh |
1.8 |
Add an "Under development, chapter" - shortish description of what |
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is available (last chapter) |
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cnh |
1.7 |
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cnh |
1.33 |
- add in example latex for formatting author names in different pieces. |
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this aknowledges peoples contributions and gives ref for who |
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to talk to. |
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cnh |
1.9 |
o HTML, scripts and front content |
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edhill |
1.46 |
- pick a URL: mitgcm.org/r2 <-- EH3's preferred base URL |
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cnh |
1.1 |
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- mitgcm.org/r2_web_testing/latest |
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edhill |
1.46 |
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o --DONE-- add another short-cut for quick download |
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o --DONE-- add another short-cut |
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About |
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Installation |
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Contents |
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Overview |
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Tutorials (broken) |
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Browse Code |
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o --DONE-- words on http://mitgcm.org/r2_web_testing/latest change to |
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cnh |
1.1 |
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edhill |
1.46 |
o --DONE-- finite-volume doesn't leap to FV figure |
63 |
cnh |
1.1 |
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edhill |
1.46 |
o -- DONE ??? -- have another go at pnmcrop et al. |
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cnh |
1.1 |
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66 |
edhill |
1.46 |
I've tried making a small change in latex2html which fixes |
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the oddball-lower-alignment issue that we were seeing with |
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most in-line expressions (that is, math embedded in text). |
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The fix results in some things being slightly raised but I |
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thin this is more asthetically pleasing than being somewhat |
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lowered as before. --EH3 |
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To view the altered alignment, see: |
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http://eddy.csail.mit.edu/r2/latest/ |
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cnh |
1.1 |
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cnh |
1.9 |
o Need an empty package as part of distribution. Check out atm_common |
78 |
cnh |
1.1 |
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edhill |
1.46 |
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cnh |
1.9 |
o Latex |
81 |
cnh |
1.1 |
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82 |
cnh |
1.9 |
Chapter 1 - CNH |
83 |
cnh |
1.1 |
o single kernel diagram - |
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add reference to MWR paper |
85 |
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o non-hydro |
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add reference to 1995 and 1999 papers |
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pdf of 1995 paper |
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o FV |
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add references to 1997 papers. |
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o Tangent linear/adjoint add reference to |
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Heimbach papers, Marotzke, 1998 ECMWF, Bugi etc... |
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o platforms |
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Add reference to SC article and Scientific Programming article |
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o List of key papers needs to be updated and reformatted |
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101 |
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o Global atmosphere: `Held Suarez', |
102 |
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update Adcroft reference |
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fix up ingrid link and frame (ingrid movies seem to be broken?) |
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Held and Suarez reference is not a link. |
105 |
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106 |
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o Ocean Gyres |
107 |
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fix up frame link |
108 |
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make "lopped cell" a link to referenced paper. |
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add references (ask Steph/Mick) |
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online/offline paper |
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112 |
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o Convection and mixing over topography |
113 |
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add in Legg references for convection and mixing over topography |
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and external link to CPT-GCE etc... |
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o Boundary forced internal waves |
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add in Legg references, obc's reference |
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o Parameter sensitivity |
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add in Bugnion references, Boyin references, Steph references |
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122 |
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o State estimation |
123 |
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add in references from Patrick/Carl/Ichiro/Detlef etc... |
124 |
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update links to point to latest ECCO results |
125 |
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ECCO ingrid results have been moved |
126 |
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add forward links to "ECCO state estimation" chapter in manual |
127 |
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128 |
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o Ocean biogeochemical cycles |
129 |
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add in references from Mick/Galen etc... |
130 |
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fix ingrid link ( date to date thing does not appear to work) |
131 |
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figure url does not have a "target=idontexist" entry |
132 |
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133 |
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o Simulations of laboratory experiments |
134 |
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reference Wardle and Karsten papers |
135 |
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update links to include DDDAS "PIAB" page |
136 |
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cylindrical polar coordinates |
137 |
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138 |
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o Continuos equations in ''r'' coordinates |
139 |
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add references to iso paper |
140 |
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no mention of z* and p* - forward reference to z*/p* in 2. |
141 |
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add that coupling also manifests through F, Q |
142 |
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add tracer transport |
143 |
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144 |
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o Kinematic boundary conditions |
145 |
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146 |
cnh |
1.9 |
o Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic and |
147 |
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Non-hydrostatic forms |
148 |
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need to tidy up discussion of shallow-atmosphere to be |
149 |
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consistent with the code or change code to be consistent |
150 |
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with the discussion! |
151 |
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make references hyperlinks |
152 |
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add stuff too |
153 |
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JMC remove QNH atmosphere |
154 |
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need to sort out calc_gw for deep atmosphere |
155 |
cnh |
1.1 |
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156 |
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o Finding the pressure field |
157 |
cnh |
1.9 |
make references hyperlinks |
158 |
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add forward references to manual algorithm section |
159 |
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change Elliptic to "elliptic" |
160 |
cnh |
1.1 |
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161 |
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o Forcing and dissipation |
162 |
cnh |
1.9 |
make "physics packages" refer to chapter 6. |
163 |
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should we move "external forcing" et. al to a |
164 |
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generic_forcing_driver package? |
165 |
cnh |
1.1 |
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166 |
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viscosities |
167 |
cnh |
1.9 |
update to mention Smag/Leith (Ah and A4 not constant) |
168 |
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and to have forward references to numerical section |
169 |
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tracers |
170 |
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forward references to numerical section, reddy, GM etc... |
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add references to literature |
172 |
cnh |
1.1 |
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173 |
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o 1.3.8 Vector invariant form |
174 |
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forward references to numerical section |
175 |
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176 |
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o 1.3.9 Adjoint |
177 |
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add a little more here + some hyperlink to chapter 5. |
178 |
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179 |
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o 1.4 Appendix ATMOSPHERE |
180 |
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181 |
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add some introductory words |
182 |
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183 |
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o 1.6 Coordinate systems |
184 |
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o only has some words on spherical polar. add some brief words |
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to cover all of |
186 |
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- cartesian |
187 |
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- spherical |
188 |
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- cylindrical |
189 |
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- general orthogonal curvilinear (vector invariant) |
190 |
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191 |
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o Equation of state options |
192 |
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add some discussion |
193 |
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can't remember what we said we were going to do here |
194 |
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PH to do something |
195 |
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196 |
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197 |
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Change hydrodynamical to "dynamical" |
198 |
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199 |
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Examples |
200 |
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201 |
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- extra "in action" cases |
202 |
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203 |
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o high res ocean with diurnal atmospheric state forcing |
204 |
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- links to ingrid output |
205 |
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CNH/Dimitris |
206 |
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207 |
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o realistic FIZHI from Andrea |
208 |
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- links to ingrid output |
209 |
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from AM |
210 |
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211 |
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o with seaice on high res cube |
212 |
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- links to ingrid output |
213 |
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CNH/Dimitris |
214 |
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215 |
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o coupled aqua, ridge world etc... |
216 |
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- links to ingrid output |
217 |
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get stuff from Daniel |
218 |
cnh |
1.38 |
Davids donut movie |
219 |
cnh |
1.1 |
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220 |
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o constrained lab simulation |
221 |
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- links to ingrid output for model and lab |
222 |
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fields |
223 |
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get stuff from Sai/Andrew |
224 |
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225 |
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o sensitivity wrt to iron |
226 |
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227 |
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o optimization |
228 |
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- update to link to latest ECCO sites and GF |
229 |
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related material |
230 |
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231 |
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o eddy diffusivity transport application |
232 |
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233 |
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o Gas giant? |
234 |
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235 |
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236 |
cnh |
1.10 |
>>>> from JM |
237 |
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238 |
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239 |
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manual, section.2 : |
240 |
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241 |
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In general: |
242 |
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- add more refences/links to S/R & variable name |
243 |
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- would be nice to have an active link to the fortran-file |
244 |
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for all the S/R & eq.Number in the "calling-tree" boxes |
245 |
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- search for CALC_MOM_RHS and replace it by the appropriate S/R |
246 |
jmc |
1.39 |
(mom_flux_form, mom_vecinv, dynamics) <- DONE |
247 |
cnh |
1.10 |
- Problem with notation: in section.1 \vec{\bf v_h} (or \vec{\mathbf{v}}_{h}) |
248 |
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was used for the horizontal velocity vector, and the 3.D vector was \vec{\mathbf{v}} |
249 |
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in section.2, \vec{\bf v} is used instead and 3.D velocity vector is |
250 |
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simply written \vec{v}. |
251 |
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I would suggest to keep the notation as they are (since they are consistent |
252 |
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inside each section) but may be to move the "notation.tex" piece |
253 |
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at the beginning of section.2 and to mention clearly the changes between |
254 |
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the 2 sections. |
255 |
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256 |
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in content: Horizontal Dissipation: 2 times in vector-invariant section |
257 |
jmc |
1.39 |
<- DONE |
258 |
cnh |
1.10 |
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259 |
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2.1 time-stepping (part2/time_stepping.tex) |
260 |
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261 |
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- this is not clear to me: |
262 |
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263 |
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>> In all the above configurations it is also possible to substitute the |
264 |
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>> Adams-Bashforth with an alternative time-stepping scheme for terms |
265 |
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>> evaluated explicitly in time |
266 |
jmc |
1.39 |
<- Leave it general. |
267 |
cnh |
1.10 |
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268 |
cnh |
1.47 |
o Time-stepping outline |
269 |
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- what gets called when |
270 |
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271 |
cnh |
1.10 |
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272 |
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2.2 rigid-lid: |
273 |
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274 |
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- At some point, would be better to replace "g \eta" with "\Phi_s (cg2d_x)" |
275 |
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to stay closer to the code. |
276 |
jmc |
1.44 |
- mention section 2.5 implicit-Time-stepping (for vertical viscosity) <- DONE |
277 |
cnh |
1.10 |
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278 |
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2.3 linear free-surface: |
279 |
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- add ref(+link) to S/R names: |
280 |
jmc |
1.44 |
- add ref(+link) to Crank-Nickelson section 2.9.1 <- DONE |
281 |
cnh |
1.10 |
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282 |
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2.4 Adams-Bashforth |
283 |
jmc |
1.44 |
- add stability diagrams (I have some figures that I can put) <- DONE |
284 |
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- add link for var. forcing_In_AB and epsil_AB <- half DONE |
285 |
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- add S/R link for S/R ADAMS_BASHFORTH2 <-DONE |
286 |
cnh |
1.10 |
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287 |
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2.5 Implicit time-stepping |
288 |
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- add name of S/R: IMPLDIFF, GAD_IMPLICIT_R, MOM_U_IMPLICIT_R |
289 |
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SOLVE_TRIDIAGONAL, SOLVE_PENTADIAGONAL |
290 |
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- update: also used for vertical advection |
291 |
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292 |
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2.6 Synchronous time-stepping: |
293 |
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- add link for S/R THERMODYNAMICS, DYNAMCIS, SOLVE_FOR_PRESSURE, |
294 |
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MOMENTUM_CORRECTION_STEP. |
295 |
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296 |
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2.7 Stagger baroclinic time-stepping |
297 |
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- mention AB(T,S) instead of AB(Gt,Gs) (in development) at the end |
298 |
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299 |
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2.8 NH |
300 |
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- add link & S/R names: CALC_GW, SOLVE_FOR_PRESSURE, CG3D |
301 |
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302 |
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2.9 Variants on Free-Surface |
303 |
jmc |
1.39 |
- Delta.t mis-written (eq.2.73) <- DONE |
304 |
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- Eq.Num missing <- DONE |
305 |
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- u* is stored in gU (and not in gUnm1) <- DONE |
306 |
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- Phi_nh in NH_VARS.h <- DONE |
307 |
cnh |
1.10 |
- add link to S/R file: SOLVE_FOR_PRESSURE, CALC_DIV_GHAT, CG2D, CG3D, |
308 |
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INI_CG2D, INI_CG3D |
309 |
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310 |
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2.9.1 Crank-Nickelson |
311 |
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- link for variable: implicSurfPress, implicDiv2DFlow, useRealFreshWater |
312 |
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313 |
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2.9.2 NLFS |
314 |
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- eq.Nb are wrong in html |
315 |
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- 2.9.2.4 : set of eq. appears wrong in html (but right in .dvi) |
316 |
jmc |
1.39 |
<- DONE |
317 |
cnh |
1.10 |
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318 |
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2.10.1 Notation |
319 |
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- Area definition is not really used like this |
320 |
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321 |
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>> Ao : Area of the face orthogonal to "o" direction (o=u,v,w) |
322 |
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323 |
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Instead, in the following section, Ac,Aw,As,A_zeta (= corresponding to |
324 |
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the model variables) are used (e.g., see section 2.10.5) |
325 |
jmc |
1.39 |
<- DONE |
326 |
cnh |
1.10 |
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327 |
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2.10.5 Horizontal grid: |
328 |
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- fig.2.8 : should use Aw,As consistently in this figure description, |
329 |
jmc |
1.39 |
in the figure itself, as it is in the text. <- DONE |
330 |
cnh |
1.10 |
- curvilinear: |
331 |
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to add: mention the angle of the grid direction relative to |
332 |
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Eastward, Northward direction. |
333 |
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+ mention horizGridFile= in file "data" (PARM04) |
334 |
cnh |
1.13 |
- add cylindrical polar grid description |
335 |
cnh |
1.10 |
need to do a better job of relating model variables to this diagram |
336 |
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337 |
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338 |
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2.11 Continuity & Horizontal Pressure gradient terms |
339 |
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- mention that d.Phi/dr|s =g if using z coordinate |
340 |
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- eq. 2.90 not clear regarding \delta_k(P-E) |
341 |
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better to add the free surface eq: d.eta/dt = w_s + P-E |
342 |
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343 |
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2.12 Hydrostatic balance |
344 |
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- add ref to Atmosphere Appendix section (1.4) since Adcroft 2002 |
345 |
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is hard to find |
346 |
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- add ref to section 1.3.4 (Hydrostatic, Quasi-Hydrostatic & Non-H) |
347 |
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and in section 1.3.4: remove the 1.3.4.3.2 subsection: |
348 |
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Quasi-nonhydrostatic Atmosphere |
349 |
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350 |
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2.13.2 Coriolis terms |
351 |
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- note: the discretization used when useEnergyConservingCoriolis=T |
352 |
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has no hFac and no Area and is still different from the form |
353 |
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described here (with Area & hFac); |
354 |
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355 |
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2.13.5 Lateral dissipation |
356 |
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- add description of how to use cosFactor & cosPower |
357 |
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- add the parameter correspondence: Ah <-> viscAh ; A4 <-> viscA4 |
358 |
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o need to relate c11, c12 etc.. to COSFAC, USE_COS etc... flags |
359 |
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in code need to explain why cos()3/2 turns out to be |
360 |
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scaling (not cos()2) |
361 |
cnh |
1.15 |
- need to reference the smag/leith section. |
362 |
cnh |
1.10 |
|
363 |
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2.13.6 Vertical dissipation |
364 |
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- mention the implicit vertical viscosity option and ref to section 2.5 |
365 |
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- add the parameter correspondence: Av <-> viscAr (and might change also |
366 |
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the notation to Ar) |
367 |
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368 |
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2.14 Vector invariant momentum equations |
369 |
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- indicate that the NH pieces (vertical momentum eq) are not yet coded |
370 |
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and that the NH code uses the flux form. |
371 |
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372 |
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2.14.6 Horizontal dissipation -> Horizontal Divergence |
373 |
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374 |
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2.14.7 Horizontal dissipation |
375 |
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- add the parameter correspondence: A_D,A_z <-> viscAhD,viscAhZ |
376 |
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and A_D4,A_z4 <-> viscA4D,viscA4Z |
377 |
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378 |
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2.16 & 2.17 & 2.18 : |
379 |
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- add 1rst Order upwind option & DST-2 (Lax-Wendroff) options |
380 |
jmc |
1.39 |
- fix equations 2.202 & 2.203 (thanks to Martin) <- DONE |
381 |
cnh |
1.10 |
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382 |
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2.20.2 mercator, non-dimensional Equations: |
383 |
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- does not use std notation |
384 |
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- would be better as an appendix of section 2.20: |
385 |
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(e.g changing the tile to: |
386 |
cnh |
1.12 |
- talk to Baylor |
387 |
cnh |
1.10 |
Appendix: non-dimensional Equations on Spherical-Polar grid.) |
388 |
jmc |
1.39 |
<- No (Chris said) |
389 |
cnh |
1.34 |
|
390 |
|
|
|
391 |
|
|
Diagrams of grid locations etc.... and what variables and output files |
392 |
|
|
and/or netcdf variable names are not very easy to figure out and follow. |
393 |
|
|
It would be good to redo and extend these diagrams and align with GRID.h |
394 |
|
|
content. |
395 |
cnh |
1.12 |
|
396 |
cnh |
1.10 |
|
397 |
|
|
JM |
398 |
|
|
|
399 |
cnh |
1.11 |
|
400 |
|
|
>>>> From Andrea |
401 |
|
|
|
402 |
|
|
Chapter 3 |
403 |
|
|
-------- |
404 |
|
|
|
405 |
|
|
Almost all of the 'math mode' text is dropped down as subscripts |
406 |
|
|
|
407 |
molod |
1.43 |
3.11.3.1 - refers to figures and equations, links are broken |
408 |
cnh |
1.11 |
|
409 |
molod |
1.43 |
3.12.3.2 - line 43: link to equation is broken |
410 |
cnh |
1.11 |
- line 51-53: link to equation is broken |
411 |
|
|
- there is some mess of text hanging around the end of this section. remove? reformat? |
412 |
|
|
|
413 |
molod |
1.43 |
3.13.4.1 - line 34 - link to equation is broken |
414 |
cnh |
1.11 |
- lines 60,61 - 1st (take out the 'r' in the superscript) |
415 |
|
|
|
416 |
molod |
1.43 |
3.14.2 - link to theta-equation is broken |
417 |
|
|
3.14.5.4 -- ALL of the bold links to variable names are broken |
418 |
cnh |
1.11 |
line 34: link to equation is broken |
419 |
|
|
|
420 |
cnh |
1.47 |
o Update basic intro with one and four layer gyres |
421 |
|
|
- include advection options |
422 |
|
|
- conservation analysis |
423 |
|
|
- diagnostics |
424 |
|
|
|
425 |
|
|
o Four degree adjoint |
426 |
|
|
- both TAF and OpenAD based. |
427 |
|
|
|
428 |
|
|
o Coupled with biogeo setup |
429 |
|
|
- based on CCGS setup |
430 |
|
|
|
431 |
|
|
|
432 |
cnh |
1.10 |
>>>> From Ed |
433 |
|
|
|
434 |
|
|
Here are the remaining bits for Chap 4 : |
435 |
|
|
|
436 |
|
|
- missing references (if you point me towards URLs, I'll add them |
437 |
|
|
to the bibliography): |
438 |
|
|
\ref{ref hoe and hill, ecmwf} |
439 |
|
|
\ref{magicgarden} |
440 |
|
|
\ref{IBMLAPI} |
441 |
|
|
\ref{Memorychannel} |
442 |
|
|
\ref{hoe-hill:99} |
443 |
|
|
|
444 |
|
|
- There are a few empty sub-sections at the end of Chap 4 that |
445 |
|
|
should either be commented out or fleshed out. |
446 |
|
|
|
447 |
|
|
and thats about it for Chap 4. |
448 |
|
|
|
449 |
|
|
|
450 |
|
|
Add more to quick links on front page |
451 |
|
|
|
452 |
|
|
Chapter 6 |
453 |
|
|
|
454 |
|
|
the master package diagram does not appear in the document |
455 |
|
|
|
456 |
|
|
Master list of packages (add this to beginning of chap 6) |
457 |
cnh |
1.1 |
|
458 |
|
|
admtlm/ - autodiff (chapter 5) |
459 |
cnh |
1.10 |
aim/ - retired |
460 |
cnh |
1.16 |
aim_compon_interf/ - 6.6 (no content yet)(Daniel + JM) |
461 |
cnh |
1.1 |
aim_ocn_coupler/ - 6.6 (no content yet) |
462 |
cnh |
1.10 |
aim_v23/ - 6.4.1 (content needs fixing - JM to do) |
463 |
cnh |
1.16 |
atm_common/ - nothing in this package (6.4.1 related) |
464 |
cnh |
1.1 |
autodiff/ - autodiff (chapter 5) |
465 |
|
|
bulk_force/ - 6.3.3 |
466 |
|
|
cal/ - 6.3.5 |
467 |
cnh |
1.16 |
cd_code/ - chapter 2 (JM check add a reference to paper, |
468 |
|
|
mention parameter in data) |
469 |
|
|
cfc/ - not sure (CNH to talk to Steph and Helen) |
470 |
|
|
chronos/ - AM to check (not being used - Andrea to kill it) |
471 |
|
|
compon_communic/ - 6.6 (no content yet)(Daniel + JM) |
472 |
cnh |
1.1 |
cost/ - not sure, check with PH |
473 |
|
|
ctrl/ - not sure, check with PH |
474 |
|
|
debug/ - JM may do something in chapter 7 (utilities) |
475 |
|
|
diagnostics/ - 7.1 |
476 |
|
|
dic/ - 6.7.2 |
477 |
cnh |
1.16 |
ebm/ - (check with PH) |
478 |
cnh |
1.1 |
ecco/ - chapter 8 |
479 |
|
|
embed_files/ - add something to chapter 7 |
480 |
|
|
exch2/ - 6.2.2 |
481 |
|
|
exf/ - 6.3.4 |
482 |
|
|
fizhi/ - 6.4.3 |
483 |
cnh |
1.47 |
o Including FIZHI doc |
484 |
|
|
- get things up to date |
485 |
cnh |
1.18 |
flt/ - (PH check) |
486 |
cnh |
1.1 |
gchem/ - 6.7.1 |
487 |
|
|
generic_advdiff/ - in chapter 2 (JM check) |
488 |
|
|
ggl90/ - nothing, (Martin?) |
489 |
|
|
gmredi/ - in chapter 2 (JM check). also need |
490 |
cnh |
1.18 |
Ferrari & Mc transition zone stuff (Samar doing this) |
491 |
|
|
get dfer to read this |
492 |
cnh |
1.1 |
grdchk/ - grdchk (chapter 5 - check with PH) |
493 |
|
|
gridalt/ - 6.2.4 |
494 |
|
|
kpp/ - 6.3.2 |
495 |
cnh |
1.18 |
land/ - 6.4.2 (not connected to code Rong's notes - JM to fix) |
496 |
cnh |
1.1 |
matrix/ - Samar |
497 |
|
|
mdsio/ - 7.3.1 |
498 |
|
|
mnc/ - 7.2.1 |
499 |
|
|
mom_common/ - in chapter 2 (JM check) |
500 |
|
|
mom_fluxform/ - in chapter 2 (JM check) |
501 |
|
|
mom_vecinv/ - in chapter 2 (JM check) |
502 |
|
|
monitor/ - 7.4 |
503 |
|
|
my82/ - nothing, (martin?) |
504 |
cnh |
1.19 |
obcs/ - 6.3 (needs a check - ask PH to read) |
505 |
cnh |
1.1 |
ocn_compon_interf/ - 6.6 (no content yet) |
506 |
|
|
offline/ - nothing, tutorials that need work but no package section entry |
507 |
cnh |
1.19 |
trivial to document (CNH to do) |
508 |
cnh |
1.1 |
opps/ - nothing, (martin?) |
509 |
|
|
pp81/ - nothing, (martin?) |
510 |
|
|
profiles/ - GAEL |
511 |
cnh |
1.19 |
ptracers/ - JM + SD + Martin to write something (nothing for this |
512 |
|
|
at the moment) |
513 |
|
|
AM has diagnostics table for this. |
514 |
cnh |
1.20 |
rbcs/ - CNH to talk to steph |
515 |
|
|
runclock/ - runclock - CNH |
516 |
cnh |
1.21 |
rw/ - not sure - going to stay says JMC. quick IO calls |
517 |
cnh |
1.22 |
JMC to write a quick note for that. |
518 |
cnh |
1.1 |
sbo/ - text in sbo_descruption.tex but not linked into |
519 |
cnh |
1.22 |
part6 - CNH |
520 |
cnh |
1.1 |
seaice/ - 6.5.2 - no equations, dimitris has promised some |
521 |
|
|
shap_filt/ - chapter 2, JM to check |
522 |
|
|
shelfice/ - nothing yet (martin?) |
523 |
cnh |
1.22 |
solver/ - empty (go away?) |
524 |
cnh |
1.1 |
sphere/ - chapter 5 or 8 (PH to check) |
525 |
cnh |
1.22 |
therm_seaice/ - empty (go away?) |
526 |
cnh |
1.1 |
thsice/ - 6.5.1 (JM to update?) |
527 |
|
|
timeave/ - retiring...... |
528 |
|
|
zonal_filt/ - chapter 2 (JM to check) |
529 |
|
|
|
530 |
cnh |
1.47 |
o Cost function packages |
531 |
|
|
- floats, weights, profiles etc... |
532 |
|
|
|
533 |
|
|
|
534 |
cnh |
1.20 |
list an expeiment which uses package? CNH |
535 |
|
|
|
536 |
cnh |
1.10 |
6.3.1.7 Tapering: Large, Danabasoglu and Doney, JPO 1997 |
537 |
|
|
Figure 6.8 is missing |
538 |
cnh |
1.9 |
|
539 |
cnh |
1.1 |
|
540 |
edhill |
1.32 |
===== Chapter 7 ===== [EH3 editing] : |
541 |
cnh |
1.1 |
|
542 |
edhill |
1.46 |
+ JMC: please add description of: |
543 |
edhill |
1.36 |
- diagstat |
544 |
|
|
- new temporal averaging feature |
545 |
cnh |
1.1 |
|
546 |
edhill |
1.46 |
+ add Graphix to the list of stuff in utils/matlab (Daniel) |
547 |
cnh |
1.1 |
|
548 |
edhill |
1.46 |
+ get bathymetry pre-processing stuff from Patrick and then describe it |
549 |
cnh |
1.1 |
|
550 |
edhill |
1.46 |
+ add something on spgrid mesh generator |
551 |
cnh |
1.47 |
o Grid generation |
552 |
|
|
- more explanation and some step-by-step examples |
553 |
|
|
- plotting grid examples |
554 |
|
|
|
555 |
cnh |
1.37 |
|
556 |
edhill |
1.46 |
+ add in gmaze PV calculation scripts plus write up on how it is calculated |
557 |
|
|
http://mitgcm.org/cgi-bin/viewcvs.cgi/MITgcm_contrib/gmaze_pv/ |
558 |
cnh |
1.45 |
|
559 |
cnh |
1.1 |
|
560 |
|
|
andrea |
561 |
|
|
|
562 |
cnh |
1.9 |
|
563 |
edhill |
1.28 |
9. Publications using MITgcm --> "Previous Applications of MITgcm" |
564 |
cnh |
1.9 |
Spall, Gianmaria, Legg, Dewar, Cessi, Cournelle, Follows, Adcroft, etc... |
565 |
|
|
(check in support for more names) |
566 |
cnh |
1.24 |
|
567 |
|
|
10. Under development |
568 |
cnh |
1.26 |
|
569 |
cnh |
1.35 |
Constantinos LCML |
570 |
cnh |
1.47 |
o Legend/LCML examples and explanation |
571 |
|
|
- examples and explanation! |
572 |
|
|
|
573 |
cnh |
1.35 |
|
574 |
cnh |
1.26 |
|
575 |
|
|
Bibliography |
576 |
cnh |
1.27 |
|
577 |
|
|
tidy up from misc - .tex |
578 |
cnh |
1.47 |
|
579 |
cnh |
1.48 |
Also |
580 |
|
|
|
581 |
|
|
a link to the new manual |
582 |
|
|
should appear on the front page (even if it's under construction). |
583 |
|
|
|
584 |
|
|
updating: |
585 |
|
|
http://mitgcm.org/r2_web_testing/latest/code_reference/callTree.html |
586 |
|
|
which points to a 1.5 years old code. Would be good to generate a |
587 |
|
|
new one, and even better, to try to keep it up-to-date. |
588 |
|
|
|