--- manual/manual_references.bib 2001/11/19 20:04:25 1.8 +++ manual/manual_references.bib 2016/09/21 01:28:29 1.56 @@ -1,33 +1,41 @@ +@string{angl = {Ann.\ Glaciol.}} @string{arfm = {Annu.~Rev.~Fluid Mech.}} @string{bams = {Bull.~Am.~Met.~Soc.}} @string{blm = {Bound.~Layer~Meteorol.}} -@string{jgr = {J.~Geophys.~Res.}} -@string{ijrs = {Int.~J.~Remote Sensing}} +@string{climd = {Clim.~Dynamics}} +@string{cch = {Clim.\ Change}} +@string{cup = {Cambridge University Press}} +@string{dao = {Dyn.~Atmos.~Oceans}} +@string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}} +@string{dnmi = {The Norwegian Meteorological Institute (DNMI)}} +@string{dsr = {Deep Sea Res.}} +@string{ecmwf = {ECMWF}} +@string{eos = {Eos~Trans.\ AGU}} +@string{esa = {European Space Agency (ESA)}} +@string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}} +@string{estec = {European Space Research and Technology Centre (ESTEC)}} +@string{gaos = {Global Atmos.~Ocean System}} +@string{grl = {Geophys.~Res.~Lett.}} +@string{ieee = {IEEE Trans.~Geosci. Remote Sensing}} +@string{ifremer = {IFREMER/CERSAT}} +@string{igarss = {IEEE Press, Piscataway, N.J., USA}} +@string{jam = {J.~Appl.~Meteor.}} +@string{jaot = {J.~Atmos.~Ocean.~Technol.}} @string{jas = {J.~Atmos.~Sci.}} -@string{jpo = {J.~Phys.~Oceanogr.}} @string{jclim = {J.~Clim.}} -@string{ieee = {IEEE Trans.~Geosci. Remote Sensing}} +@string{jcp = {J.~Comput.~Phys.}} @string{jfm = {J.~Fluid Mech.}} -@string{jaot = {J.~Atmos.~Ocean.~Technol.}} +@string{jgr = {J.~Geophys.~Res.}} +@string{ijrs = {Int.~J.~Remote Sensing}} @string{jms = {J.~Mar.~Sys.}} -@string{gaos = {Global Atmos.~Ocean System}} -@string{grl = {Geophys.~Res.~Lett.}} -@string{dsr = {Deep Sea Res.}} -@string{dao = {Dyn.~Atmos.~Oceans}} +@string{jpo = {J.~Phys.~Oceanogr.}} +@string{mpi = {MPI f\"ur Meteorologie}} @string{mwr = {Mon.~Wea.~Rev.}} +@string{om = {Ocean Modelling}} +@string{ptrsl = {{Phil.~Trans.~R.~Soc.~Lond.}}} @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}} +@string{siscicom= {SIAM J.\ Sci.\ Comput.}} @string{tel = {Tellus}} -@string{cup = {Cambridge University Press}} -@string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}} -@string{ifremer = {IFREMER/CERSAT}} -@string{igarss = {IEEE Press, Piscataway, N.J., USA}} -@string{dnmi = {The Norwegian Meteorological Institute (DNMI)}} -@string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}} -@string{mpi = {MPI f\"ur Meteorologie}} -@string{ecmwf = {ECMWF}} -@string{estec = {European Space Research and Technology Centre - (ESTEC)}} -@string{esa = {European Space Agency (ESA)}} @Article{bis-eta:92, author = {C.H. Bishof and G.F. Corliss and L. Green and @@ -39,7 +47,7 @@ volume = {3}, pages = {625--638}, } - + @incollection{bis:94, author = {C.H. Bishof}, year = 1994, @@ -52,7 +60,7 @@ publisher = {Kluwer}, address = {Dordrecht, NL}, } - + @techreport{bis-eta:94, author = {C. Bishof and A. Carle and P. Khademi and A. Maurer}, @@ -63,11 +71,47 @@ Computer Science Division}, type = {Argonne Preprint}, number = {ANL-MCS-P981-1194}, - address = {ANL; 9700 South Cass Ave.; + address = {ANL; 9700 South Cass Ave.; Argonne (ILL), 90439; USA}, note = {http://www.mcs.anl.gov/autodiff/}, } - + +@Article{bouillon13, + author = {Sylvain Bouillon and Thierry Fichefet and Vincent + Legat and Gurvan Madec}, + title = {The Elastic-Viscous-Plastic Method Revisited}, + journal = om, + volume = 71, + number = 0, + pages = {2--12}, + year = 2013, + note = {Arctic Ocean}, + issn = {1463-5003}, + doi = {10.1016/j.ocemod.2013.05.013}, + url = {http://dx.doi.org/10.1016/j.ocemod.2013.05.013}, +} +@ARTICLE{bryan:84, + author = {Kirk Bryan}, + title = {Accelerating the convergence to equilibrium of Ocean-Climate Models}, + journal = jpo, + year = {1984}, + volume = {14}, + number = {4}, + pages = {666-673}, +} + +@ARTICLE{bugi-hill:06, + author = {V. Bugnion and C. Hill}, + title = {Equilibration mechanisms in an adjoint ocean general + circulation model}, + journal = {Ocean Dynamics}, + year = {2006}, + volume = {56}, + number = {1}, + pages = {51-61}, + doi = {10.1007/s10236-005-0052-z}, +} + @techreport{bis-roh:97, author = {C. Bishof and L. Roh}, year = 1997, @@ -77,22 +121,39 @@ Computer Science Division}, type = {Argonne Preprint}, number = {ANL-MCS-P626-1196}, - address = {ANL; 9700 South Cass Ave.; + address = {ANL; 9700 South Cass Ave.; Argonne (ILL), 90439; USA}, note = {http://www.mcs.anl.gov/autodiff/}, } - + +@Article{castro-morales14, + author = {Karel Castro-Morales and Frank Kauker and Martin + Losch and Stefan Hendricks and Kathrin Riemann-Campe + and R{\"u}diger Gerdes}, + title = {Sensitivity of Simulated {A}rctic Sea Ice to + Realistic Ice Thickness Distributions and Snow + Parameterizations}, + journal = jgr, + issn = {2169-9291}, + year = 2014, + volume = 119, + number = 1, + pages = {559--571}, + url = {http://dx.doi.org/10.1002/2013JC009342}, + doi = {10.1002/2013JC009342}, +} + @Article{cou-tal:87, author = {P. Courtier and O. Talagrand}, year = 1987, - title = {Variational assimilation of meteorological + title = {Variational assimilation of meteorological observations with the adjoint vorticity equation. II: Numerical results}, journal = qjrms, volume = {113}, pages = {1329--1347}, } - + @Article{cou-tal:90, author = {P. Courtier and O. Talagrand}, year = 1990, @@ -103,7 +164,7 @@ volume = {42A}, pages = {531--549}, } - + @Article{cou-eta:94, author = {P. Courtier and J.-N. Th{\'e}paut and A. Hollingsworth}, @@ -114,7 +175,29 @@ volume = {120}, pages = {1367--1387}, } - + +@ARTICLE{durr:91, + author = {Dale R. Durran}, + title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative + to Leapfrog Time Differencing}, + journal = mwr, + year = {1991}, + volume = {119}, + pages = {702-720}, +} + + +@ARTICLE{dutk-etal:06, + author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall}, + title = {Controls on ocean productivity and air-sea carbon flux: + An adjoint model sensitivity study}, + journal = grl, + year = {2006}, + volume = {33}, + pages = {L02603}, + doi = {10.1029/2005GL024987}, +} + @Article{err:97, author = {R.M. Errico}, year = 1997, @@ -123,7 +206,7 @@ volume = {78}, pages = {2577--2591}, } - + @Article{far-moo:92, author = {B.F. Farrell and A.M. Moore}, year = {1992}, @@ -133,7 +216,7 @@ volume = {22}, pages = {338--349}, } - + @Article{far-ioa:96a, author = {B.F. Farrell and P. Ioannou}, year = {1996a}, @@ -143,7 +226,7 @@ volume = {53}, pages = {2025--2040}, } - + @Article{far-ioa:96b, author = {B.F. Farrell and P. Ioannou}, year = {1996b}, @@ -153,7 +236,7 @@ volume = {53}, pages = {2041--2053}, } - + @techreport{fau-pap:98, author = {C. Faure and Y. Papegay}, year = 1998, @@ -166,7 +249,7 @@ 06902 Sophia Antipolis Cedex; France}, note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html}, } - + @Article{fau:00, author = {C. Faure}, year = {2000}, @@ -174,27 +257,58 @@ journal = {Optimisation Methods and Software}, note = {in press}, } - + +@Article{fer-eta:05, + author = {D. Ferreira and J. Marshall and P. Heimbach}, + year = 2005, + title = {Estimating Eddy Stresses by Fitting Dynamics to Observations + using a Residual-Mean Ocean Circulation Model and Its Adjoint}, + journal = jpo, + volume = {35}, + pages = {1891--1910}, + } + +@Article{for-eta:15, + author = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.}, + title = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation}, + journal = {Geoscientific Model Development}, + volume = {8}, + year = {2015}, + number = {10}, + pages = {3071--3104}, + url = {http://www.geosci-model-dev.net/8/3071/2015/}, + doi = {10.5194/gmd-8-3071-2015} +} + +@Article{gas-eta:90, + author = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre}, + year = 1990, + title = {A Simple Eddy Kinetic Energy Model for Simulations of the + Oceanic Vertical Mixing: Tests at Station Papa and Long-Term + Upper Ocean Study Site}, + journal = jgr, + volume = {95 (C9)}, + pages = {16,179--16,193}, + } + @Article{gen-mcw:90, - author = {P.R. Gent and J.C. McWilliams}, + author = {P. R. Gent and J. C. McWilliams}, year = 1990, title = {Isopycnal mixing in ocean circulation models}, journal = jpo, volume = {20}, pages = {150--155}, } - + @Article{gen-eta:95, - author = {P.R. Gent and J. Willebrand and T.J. McDougall - and J.C. McWilliams}, + author = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams}, year = 1995, - title = {Parameterizing eddy-induced tracer transports in - ocean circulation models}, + title = {Parameterizing eddy-induced tracer transports in ocean circulation models}, journal = jpo, volume = {25}, pages = {463--474}, } - + @Article{gie-kam:98, author = {R. Giering and T. Kaminski}, year = 1998, @@ -207,7 +321,7 @@ @techreport{gie:99, author = {R. Giering}, year = 1999, - title = {Tangent linear and Adjoint Model Compiler. + title = {Tangent linear and Adjoint Model Compiler. Users manual 1.4 (TAMC Version 5.2)}, institution = {Massachusetts Institute of Technology}, type = {Report}, @@ -216,7 +330,7 @@ 02139; USA}, note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html}, } - + @incollection{gie:00, author = {R. Giering}, editor = {P. Kasibhatla and M. Heimann and P. Rayner and @@ -240,16 +354,38 @@ volume = {45}, pages = {407--435}, } - + @book{gil-eta:81, author = {P.E. Gill and W. Murray and M.H. Wright}, title = {Practical optimization}, year = 1981, publisher = {Academic Press}, - address = {London}, + address = {London}, pages = {401 pp.}, } - + +@incollection{gri:89, + author = {A. Griewank}, + year = 1989, + title = {On automatic differentiation}, + booktitle = {Mathematical Programming: Recent Developments and + Applications}, + pages = {83--108}, + editor = {M. Iri and K. Tanabe}, + publisher = {Kluwer}, + address = {Dordrecht, NL}, + } + +@Article{gri:92, + author = {A.~Griewank}, + title = {Achieving logarithmic growth of temporal and spatial + complexity in reverse {A}utomatic {D}ifferentiation}, + journal = {Optimization Methods and Software}, + year = {1992}, + volume = {1}, + pages = {35--54} +} + @book{gri:00, author = {A. Griewank}, title = {Evaluating Derivatives. Principles and Techniques @@ -258,10 +394,10 @@ series = {Frontiers in Applied Mathematics}, volume = {19}, publisher = {SIAM}, - address = {Philadelphia}, + address = {Philadelphia}, pages = {369 pp.}, } - + @Article{hal-eta:82, author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger}, year = 1982, @@ -281,22 +417,52 @@ volume = 1, pages = {241--248} } - + +@Article{held-suar:94, + author = {I.M. Held and M.J. Suarez}, + year = {1994}, + title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models}, + journal = {Bulletin of the American Meteorological Society}, + volume = {75(10)}, + pages = {1825-1830} +} + + +@article{heim-eta:11, + title = {Timescales and regions of the sensitivity of {Atlantic} meridional volume and heat transport: Toward observing system design}, + author = {Heimbach, Patrick and Wunsch, Carl and Ponte, Rui M and Forget, Gael and Hill, Chris and Utke, Jean}, + journal = {Deep Sea Research Part II: Topical Studies in Oceanography}, + volume = {58}, + number = {17}, + pages = {1858--1879}, + year = {2011}, + publisher = {Elsevier} +} + @Article{hil-eta:01, - author = {C. Hill and M. Follows and V. Bugnion and + author = {C. Hill and M. Follows and V. Bugnion and J. Marshall}, - year = {2001}, - title = {Spatial and Temporal Impacts of ocean general + year = {2002}, + title = {Spatial and Temporal Impacts of ocean general circulation on carbon sequestration}, journal = {Global Biogeochemical Cycles}, note = {submitted}, } +@ARTICLE{hib80, + author = {Hibler, III, William D.}, + TITLE = "Modeling a Variable Thickness Sea Ice Cover", + JOURNAL = mwr, + YEAR = 1980, + VOLUME = 1, + PAGES = "1943-1973" +} + @Article{Holland75, author = {W.R. Holland and L. B. Lin}, year = {1975a}, - title = {On the origin of mesoscale eddies and their contribution - to the general circulation of the ocean. I. A preliminary + title = {On the origin of mesoscale eddies and their contribution + to the general circulation of the ocean. I. A preliminary numerical experiment}, journal = jpo, volume = {5}, @@ -306,7 +472,7 @@ @Article{hol-lin:75b, author = {W.R. Holland and L. B. Lin}, year = {1975b}, - title = {On the origin of mesoscale eddies and their contribution + title = {On the origin of mesoscale eddies and their contribution to the general circulation of the ocean. II. A parameter study}, journal = jpo, @@ -314,6 +480,15 @@ pages = {658-669} } +@Article{jam-oze:86, + author = {B.M. Jamart and J. Ozer}, + year = {1986}, + title = {Numerical boundary layers and spurious residual flows}, + journal = jgr, + volume = {91}, + pages = {10,621-10,631} + } + @book{kas-eta:00, author = {P. Kasibhatla and M. Heimann and P. Rayner and N. Mahowald and R.G. Prinn and D.E. Hartley}, @@ -329,25 +504,24 @@ @Article{lar-eta:94, author = {W.G. Large and J.C. McWilliams and S.C. Doney}, year = 1994, - title = {Oceanic vertical mixing: A review and a model - with nonlocal boundary layer parameterization}, + title = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization}, journal = {Rev.~Geophys.}, volume = {32}, pages = {363--403}, } - + @Article{lar-eta:97, - author = {W.G. Large and G. Danabasoglu and S.C. Doney - and J.C. McWilliams}, + author = {W. G. Large and G. Danabasoglu and S. C. Doney + and J. C. McWilliams}, year = 1997, title = {Sensitivity to surface forcing and boundary layer - mixing in a global ocean model: annual-mean - climatology}, + mixing in a global ocean model: Annual-mean climatology}, journal = jpo, volume = {27}, + number = 11, pages = {2418--2447}, } - + @Article{led-tal:86, author = {F.-X. {Le Dimet} and O. Talagrand}, year = 1986, @@ -388,7 +562,7 @@ OPTannote = {} } - + @Article{lew-der:85, author = {J. Lewis and J. Derber}, year = {1985}, @@ -398,7 +572,7 @@ volume = {37A}, pages = {309--322}, } - + @techreport{lon:88, author = {R.B. Long}, year = 1988, @@ -410,7 +584,21 @@ pages = {38 pp.}, address = {Delft (NL)}, } - + +@ARTICLE{losc-heim:06, + author = {Martin Losch and Patrick Heimbach}, + title = {Adjoint Sensitivity of an Ocean General Circulation + Model to Bottom Topography}, + journal = jpo, + year = 2007, + volume = 37, + doi = {10.1175/JPO3017.1}, + number = 2, + pages = {377--393}, + url = {http://mitgcm.org/pdfs/Los2006a.pdf}, +} + + @Article{maro-wun:93, author = {J. Marotzke and C. Wunsch}, year = 1993, @@ -421,9 +609,9 @@ volume = {98, C11}, pages = {20,149--20,167}, } - + @Article{maro-eta:99, - author = {J. Marotzke and R. Giering and K.Q. Zhang and + author = {J. Marotzke and R. Giering and K.Q. Zhang and D. Stammer and C. Hill and T. Lee}, year = 1999, title = {Construction of the adjoint MIT ocean general @@ -433,7 +621,7 @@ volume = {104, C12}, pages = {29,529--29,547}, } - + @Article{mars-eta:97a, author = {J. Marshall and C. Hill and L. Perelman and A. Adcroft}, @@ -444,9 +632,9 @@ volume = {102, C3}, pages = {5,733--5,752}, } - + @Article{mars-eta:97b, - author = {J. Marshall and A. Adcroft and C. Hill and + author = {J. Marshall and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, year = {1997b}, title = {Hydrostatic, quasi-hydrostatic and @@ -455,8 +643,8 @@ volume = {102, C3}, pages = {5,753--5,766}, } - -@Article{mars-sha:98, + +@Article{mars-eta:98, author = {J. Marshall and H. Jones and C. Hill}, year = 1998, title = {Efficient ocean modeling using @@ -464,17 +652,69 @@ journal = jms, volume = {18}, pages = {115--134}, + url = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf}, + doi = {10.1016/S0924-7963\%2898\%2900008-6}, } - -@Article{mcw:96, - author = {J. McWilliams}, - year = 1996, - title = {Modeling the oceanic general circulation}, - journal = arfm, - volume = {28}, - pages = {215--248}, + +@Article{mol:09, + author = {Andrea Molod}, + year = 2009, + title = {Running {GCM} physics and dynamics on different grids: + algorithm and tests}, + journal = tel, + volume = {61A}, + pages = {381--393}, } - + +%% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies +%% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997. +%% (Available from Unidata or in PostScript form by anonymous FTP from +%% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also +%% a hypertext version of the User's Guide available at +%% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's +%% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are +%% also available. + +@incollection{naum-etal:06, + Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout}, + Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006}, + Editor = {{P. Wesseling, E. O~nate and J. Periaux}}, + Pages = {~}, + Publisher = {TU Delft}, + Title = {Adjoint code by source transformation with OpenAD/F}, + Year = {2006}} + +@Article{orl:76, + author = {I. Orlanski}, + year = 1976, + title = {A simple boundary condition for unbounded hyperbolic flows}, + journal = jcp, + volume = {21}, + pages = {251--269}, + } + +@Article{pal-rom:97, + author = {T. Paluszkiewicz and R.D. Romea}, + year = 1997, + title = {A one-dimensional model for the parameterization + of deep convection in the ocean}, + journal = dao, + volume = {26}, + pages = {95--130}, + } + +@TechReport{rew:97, + author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies}, + title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90}, + An Interface for Data Access, Version 3}, + institution = {Unidata Program Center}, + type = {Report}, + address = {Boulder, Colorado}, + year = 1997, + note = {http://www.unidata.ucar.edu/packages/netcdf/}, +} + + @Article{res-eta:98, author = {J.M. Restrepo and G.K. Leaf and A. Griewank}, year = 1998, @@ -484,7 +724,7 @@ volume = {19}, pages = {1586--1605}, } - + @Article{ros-eta:93, author = {N. Rostaing and S. Dalmas and A. Galligo}, year = 1993, @@ -493,11 +733,11 @@ volume = {45A}, pages = {558--568}, } - + @incollection{she-and:89, author = {J. Sheinbaum and D.L.T. Anderson}, year = 1989, - title = {Assimilation of XBT data using a variational + title = {Assimilation of XBT data using a variational technique}, booktitle = {Oceanic circulation models: Combining data and dynamics}, @@ -509,6 +749,19 @@ address = {Berlin (Germany)}, } +@article{utke-etal:08, + Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent + and M. Strout and P. Heimbach and C. Hill and + D. Ozyurt and C. Wunsch}, + Date-Modified ={2007-11-19 10:15:08 -0500}, + Journal = {{ACM} Transactions on Mathematical Software}, + Pages = {~}, + Title = {OpenAD/F: A modular open source tool for automatic + differentiation of Fortran codes}, + Volume = {34(4)}, + Year = 2008 +} + @Article{DaSilva94, author = {A. da Silva and A. C. Young and S. Levitus}, year = 1994, @@ -518,14 +771,15 @@ publisher = {U.S. Department of Commerce}, address = {Washington, D.C. (USA)}, note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, + url = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, } - -@techreport{sta-eta:97, + +@techreport{stam-etal:97, author = {D. Stammer and C. Wunsch and R. Giering and Q. Zhang and J. Marotzke and J. Marshall and C. Hill}, year = 1997, - title = {The global ocean circulation estimated from + title = {The global ocean circulation estimated from TOPEX/POSEIDON altimetry and a general circulation model}, institution = {Center for Global Change Science, Massachusetts @@ -535,18 +789,21 @@ pages = {40 pp.}, address = {Cambridge (MA), USA}, } - -@Article{sta-eta:01, - author = {D. Stammer and C. Wunsch and R. Giering and + +@article{stam-etal:02, + author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and - A. Adcroft and C. Hill and J. Marshall}, - year = 2001, - title = {The global ocean circulation during 1992 -- 1997, - estimated from ocean observations and a general - circulation model}, - journal = jgr, - note = {in press}, - } + A. Adcroft and C.N. Hill and J. Marshall}, + title = {The global ocean circulation and transports during + 1992 -- 1997, estimated from ocean observations and + a general circulation model.}, + journal = jgr, + year = {2002a}, + volume = {107(C9)}, + pages = {3118}, + doi = {10.1029/2001JC000888}, +} + @Article{Stommel66, author = {H. Stommel}, @@ -560,14 +817,14 @@ @Article{tal-cou:87, author = {O. Talagrand and P. Courtier}, year = 1987, - title = {Variational assimilation of meteorological + title = {Variational assimilation of meteorological observations with the adjoint vorticity equation. I: Theory}, journal = qjrms, volume = {113}, pages = {1311--1328}, } - + @Article{tal:97, author = {O. Talagrand}, year = 1997, @@ -576,17 +833,17 @@ volume = {75}, pages = {191--209}, } - + @book{tar:87, author = {A. Tarantola}, title = {Inverse Problem Theory: Methods for data fitting and model parameter estimation}, year = 1987, publisher = {Elsevier}, - address = {Amsterdam}, + address = {Amsterdam}, pages = {629 pp.}, } - + @techreport{tha:87, author = {W.C. Thacker}, year = 1987, @@ -598,7 +855,7 @@ pages = {64 pp.}, address = {Geesthacht (D)}, } - + @Article{tha-lon:88, author = {W.C. Thacker and R.B. Long}, year = 1988, @@ -607,7 +864,7 @@ volume = {93, C2}, pages = {1,227--1,240}, } - + @Article{tha:88, author = {W.C. Thacker}, year = 1988, @@ -617,7 +874,7 @@ volume = {93}, pages = {10,655--10,665}, } - + @Article{tha:89, author = {W.C. Thacker}, year = 1989, @@ -627,7 +884,7 @@ volume = {94, C5}, pages = {6,177--6,196}, } - + @Article{tha-rag:94, author = {W.C. Thacker and R. Raghunath}, year = 1994, @@ -637,7 +894,7 @@ volume = {99, C5}, pages = {10,131--10,141}, } - + @Article{tzi-tha:89, author = {E. Tziperman and W.C. Thacker}, year = {1989}, @@ -647,7 +904,7 @@ volume = {19}, pages = {1471--1485}, } - + @Article{tzi-eta:92a, author = {E. Tziperman and W.C. Thacker and R.B. Long and S. Hwang}, @@ -658,7 +915,7 @@ volume = {22}, pages = {1434--1457}, } - + @Article{tzi-eta:92b, author = {E. Tziperman and W.C. Thacker and R.B. Long and S. Hwang and S.R. Rintoul}, @@ -669,16 +926,16 @@ volume = {22}, pages = {1458--1485}, } - + @book{wun:96, author = {C. Wunsch}, title = {The ocean circulation inverse problem}, year = 1996, publisher = cup, - address = {Cambridge (UK)}, + address = {Cambridge (UK)}, pages = {442 pp.}, } - + @Article{zha-mar:99, author = {K.Q. Zhang and J. Marotzke}, year = 1999, @@ -708,39 +965,89 @@ author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean modeling}, - journal = {JGR}, + journal = jgr, year = 1997, volume = 102, number = {C3}, - pages = {5733-5752} + pages = {5733-5752}, + url = {http://mitgcm.org/pdfs/96JC02775.pdf}, } @Article{marshall:97b, - author = {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise}, + author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, title = {A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers}, - journal = {JGR}, + journal = jgr, year = 1997, volume = 102, number = {C3}, - pages = {5753-5766} + pages = {5753-5766}, + url = {http://mitgcm.org/pdfs/96JC02776.pdf}, } @Article{adcroft:97, author = {Adcroft, A.J. and Hill, C.N. and J. Marshall}, title = {Representation of topography by shaved cells in a height coordinate ocean model}, - journal = {MWR}, + journal = mwr, year = 1997, volume = 125, - pages = {2293-2315} + pages = {2293-2315}, + url = {http://mitgcm.org/pdfs/mwr_1997.pdf}, + doi = {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2}, +} + +@Article{adcroft:04a, + author = {Adcroft, A. and J.-M. Campin}, + title = {Re-scaled height coordinates for accurate representation + of free-surface flows in ocean circulation models}, + journal = om, + year = 2004, + volume = 7, + pages = {269-284}, + doi = {10.1016/j.ocemod.2003.09.003}, +} + +@Article{adcroft:04b, + author = {Adcroft, A. and J.-M. Campin and C. Hill and J. 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White}, + title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms}, + journal = mwr, + year = 2004, + volume = 132, + pages = {2882-2894}, + url = {http://mitgcm.org/pdfs/a_o_iso.pdf}, + doi = {10.1175/MWR2835.1}, } @Article{visbeck:97, - author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, - title = {Specification of eddy transfer coefficients in - coarse-resolution ocean circulation models}, - journal = {JPO}, + author = {M. Visbeck and J. Marshall and T. Haine and M. Spall}, + title = {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models}, + journal = jpo, year = 1997, volume = 27, number = 3, @@ -760,15 +1067,6 @@ pages = {1-51} } -@Article{marshall:98, - author = {Marshall, J., Jones, H. and C. Hill}, - title = {Efficient ocean modeling using non-hydrostatic algorithms}, - journal = {JMR}, - year = 1998, - volume = 18, - pages = {115-134} -} - @Article{mjn:99, author = {Marshall, J., Jamous, D and J. Nilsson}, title = {Reconciling `thermodynamic' and `dynamic' methods of @@ -793,23 +1091,27 @@ author = {Adcroft, A., Hill C. and J. Marshall}, title = {A new treatment of the Coriolis terms in C-grid models at both high and low resolutions}, - journal = {MWR}, + journal = mwr, year = 1999, volume = 127, - pages = {1928-1936} + pages = {1928-1936}, + url = {http://mitgcm.org/pdfs/mwr_1999.pdf}, + doi = {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2}, } @InProceedings{hill:99, author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, title = {A Strategy for Terascale Climate Modeling}, booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, - year = 1999 + year = 1999, + pages = {406-425}, + publisher = {World Scientific}, } @Article{wardle:00, author = {Wardle R. and Marshall J.}, title = {Representation of eddies in primitive equation models by a PV flux}, - journal = {JPO}, + journal = jpo, year = 2000, volume = 30, number = 10, @@ -820,15 +1122,15 @@ author = {Adcroft, A. and J.-M. Campin}, title = {Comparison of finite volume schemes and direct-space-time methods for ocean circulation models}, - journal = {OM}, + journal = om, year = 2002, note = {in preparation} } @Article{adcroft:02, - author = {Adcroft et al.}, + author = {Adcroft, A., et~al.}, title = {Energy conversion in discrete numerical models}, - journal = {OM}, + journal = om, year = 2002, note = {in preparation} } @@ -844,6 +1146,25 @@ volume = 17 } +@Article{miller_white:84, + author = {Miller, M. J. and White, A. A.}, + title = {On the non-hydrostatic equations in pressure + and sigma coordiantes}, + journal = qjrms, + year = 1984, + volume = 110, + pages = {515-533} +} + +@Article{white:89, + author = {White, A. 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