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1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2 @string{bams = {Bull.~Am.~Met.~Soc.}}
3 @string{blm = {Bound.~Layer~Meteorol.}}
4 @string{jgr = {J.~Geophys.~Res.}}
5 @string{ijrs = {Int.~J.~Remote Sensing}}
6 @string{jas = {J.~Atmos.~Sci.}}
7 @string{jpo = {J.~Phys.~Oceanogr.}}
8 @string{jclim = {J.~Clim.}}
9 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
10 @string{jfm = {J.~Fluid Mech.}}
11 @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
12 @string{jms = {J.~Mar.~Sys.}}
13 @string{gaos = {Global Atmos.~Ocean System}}
14 @string{grl = {Geophys.~Res.~Lett.}}
15 @string{dsr = {Deep Sea Res.}}
16 @string{dao = {Dyn.~Atmos.~Oceans}}
17 @string{mwr = {Mon.~Wea.~Rev.}}
18 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
19 @string{tel = {Tellus}}
20 @string{cup = {Cambridge University Press}}
21 @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
22 @string{ifremer = {IFREMER/CERSAT}}
23 @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
24 @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
25 @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
26 @string{mpi = {MPI f\"ur Meteorologie}}
27 @string{ecmwf = {ECMWF}}
28 @string{estec = {European Space Research and Technology Centre
29 (ESTEC)}}
30 @string{esa = {European Space Agency (ESA)}}
31
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35 year = 1992,
36 title = {Automatic differentiation of advanced GFD codes
37 for multidisciplinary design},
38 journal = {Journal on Computing Systems in Engineering},
39 volume = {3},
40 pages = {625--638},
41 }
42
43 @incollection{bis:94,
44 author = {C.H. Bishof},
45 year = 1994,
46 title = {Automatic differentiation, tangent linear models
47 and pseudo-adjoints},
48 booktitle = {High Performance Computing in the Geosciences},
49 series = {Series C: Mathematical and Physical Sciences},
50 pages = {59--80},
51 editor = {F.X. {Le Dimet}},
52 publisher = {Kluwer},
53 address = {Dordrecht, NL},
54 }
55
56 @techreport{bis-eta:94,
57 author = {C. Bishof and A. Carle and P. Khademi and
58 A. Maurer},
59 year = 1994,
60 title = {The ADIFOR 2.0 system for the automatic
61 differentiation of FORTRAN 77 programs},
62 institution = {Argonne National Laboratory, Mathematics and
63 Computer Science Division},
64 type = {Argonne Preprint},
65 number = {ANL-MCS-P981-1194},
66 address = {ANL; 9700 South Cass Ave.;
67 Argonne (ILL), 90439; USA},
68 note = {http://www.mcs.anl.gov/autodiff/},
69 }
70
71 @techreport{bis-roh:97,
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73 year = 1997,
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76 institution = {Argonne National Laboratory, Mathematics and
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78 type = {Argonne Preprint},
79 number = {ANL-MCS-P626-1196},
80 address = {ANL; 9700 South Cass Ave.;
81 Argonne (ILL), 90439; USA},
82 note = {http://www.mcs.anl.gov/autodiff/},
83 }
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117
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126
127 @Article{far-moo:92,
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136
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156
157 @techreport{fau-pap:98,
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163 type = {Rapport Technique},
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212 institution = {Massachusetts Institute of Technology},
213 type = {Report},
214 number = {~},
215 address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
216 02139; USA},
217 note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
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219
220 @incollection{gie:00,
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224 year = 2000,
225 booktitle = {Inverse methods in global biogeochemical cycles},
226 title = {Tangent linear and adjoint biogeochemical models},
227 publisher = {American Geophysical Union},
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321 title = {Inverse methods in global biogeochemical cycles},
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363 author = {S. Levitus and T.P.Boyer},
364 title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
365 institution = {NOAA Atlas NESDIS 3},
366 year = 1994,
367 OPTkey = {},
368 OPTtype = {},
369 OPTnumber = {},
370 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
371 OPTmonth = {},
372 OPTnote = {},
373 OPTannote = {}
374 }
375
376
377 @TechReport{Levitus94,
378 author = {S. Levitus and T.P.Boyer},
379 title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
380 institution = {NOAA Atlas NESDIS 4},
381 year = 1994,
382 OPTkey = {},
383 OPTtype = {},
384 OPTnumber = {},
385 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
386 OPTmonth = {},
387 OPTnote = {},
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448 @Article{mars-eta:97b,
449 author = {J. Marshall and A. Adcroft and C. Hill and
450 L. Perelman and C. Heisey},
451 year = {1997b},
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453 nonhydrostatic ocean modeling},
454 journal = jgr,
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531 institution = {Center for Global Change Science, Massachusetts
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534 number = {49},
535 pages = {40 pp.},
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666 title = {Oceanic data analysis using a general circulation
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676 year = 1996,
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681
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687 journal = {J.~Marine Res.},
688 volume = {57},
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690 }
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693 @InCollection{hill:95,
694 author = {Hill, C. and J. Marshall},
695 title = {Application of a Parallel Navier-Stokes Model to
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698 booktitle = {Implementations and Results Using Parallel
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700 pages = {545-552},
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705
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707 @Article{marshall:97a,
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718 @Article{marshall:97b,
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720 title = {A finite-volume, incompressible Navier Stokes model for
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722 journal = {JGR},
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728
729 @Article{adcroft:97,
730 author = {Adcroft, A.J. and Hill, C.N. and J. Marshall},
731 title = {Representation of topography by shaved cells in a height
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733 journal = {MWR},
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739 @Article{visbeck:97,
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749
750 @Article{shaw:98,
751 author = {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
752 and Marshall, J.},
753 title = {A comparison of implicitly parallel multi-threaded and
754 data-parallel implementations of an ocean model based
755 on the Navier-Stokes equations},
756 journal = {J. of Parallel and Distributed Computing},
757 year = 1998,
758 volume = 48,
759 number = 1,
760 pages = {1-51}
761 }
762
763 @Article{marshall:98,
764 author = {Marshall, J., Jones, H. and C. Hill},
765 title = {Efficient ocean modeling using non-hydrostatic algorithms},
766 journal = {JMR},
767 year = 1998,
768 volume = 18,
769 pages = {115-134}
770 }
771
772 @Article{mjn:99,
773 author = {Marshall, J., Jamous, D and J. Nilsson},
774 title = {Reconciling `thermodynamic' and `dynamic' methods of
775 computation of water-mass transformation rates},
776 journal = {DSR},
777 year = 1999,
778 volume = 46,
779 pages = {545-572}
780 }
781
782 @Article{ms:99,
783 author = {Marshall, J and F. Schott},
784 title = {Open ocean deep convection: observations, models and theory},
785 journal = {Rev. Geophys.},
786 year = 1999,
787 volume = 37,
788 number = 1,
789 pages = {1-64}
790 }
791
792 @Article{adcroft:99,
793 author = {Adcroft, A., Hill C. and J. Marshall},
794 title = {A new treatment of the Coriolis terms in C-grid models
795 at both high and low resolutions},
796 journal = {MWR},
797 year = 1999,
798 volume = 127,
799 pages = {1928-1936}
800 }
801
802 @InProceedings{hill:99,
803 author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
804 title = {A Strategy for Terascale Climate Modeling},
805 booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
806 year = 1999
807 }
808
809 @Article{wardle:00,
810 author = {Wardle R. and Marshall J.},
811 title = {Representation of eddies in primitive equation models by a PV flux},
812 journal = {JPO},
813 year = 2000,
814 volume = 30,
815 number = 10,
816 pages = {2481-2503}
817 }
818
819 @Article{ac:02,
820 author = {Adcroft, A. and J.-M. Campin},
821 title = {Comparison of finite volume schemes and direct-space-time
822 methods for ocean circulation models},
823 journal = {OM},
824 year = 2002,
825 note = {in preparation}
826 }
827
828 @Article{adcroft:02,
829 author = {Adcroft et al.},
830 title = {Energy conversion in discrete numerical models},
831 journal = {OM},
832 year = 2002,
833 note = {in preparation}
834 }
835
836 @InCollection{arakawa:77,
837 author = {Arakawa, A. and Lamb, V.},
838 title = {Computational Design of the Basic Dynamical Processes of
839 the UCLA General Circulation Model},
840 booktitle = {Methods in Computational Physics},
841 pages = {174-267},
842 publisher = {Academic Press},
843 year = 1977,
844 volume = 17
845 }
846
847 @Article{adcroft:98,
848 author = {Adcroft, A. and Marshall, D.},
849 title = {How slippery are piecewise-constant coastlines in numerical
850 ocean models?},
851 journal = {Tellus},
852 year = 1998,
853 volume = 50,
854 number = 1,
855 pages = {95-108}
856 }
857
858 @PhdThesis{adcroft:95,
859 author = {Adcroft, A.},
860 title = {Numerical Algorithms for use in a Dynamical Model of the
861 Ocean},
862 school = {Imperial College, London},
863 year = 1995
864 }
865
866 @Article{griffies:00,
867 author = {Griffies, S.,M. and Hallberg, R.,W.},
868 title = {Biharmonic friction with a Smagorinsky-like viscosity for
869 use in large-scale eddy-permitting ocean models},
870 journal = {MWR},
871 year = 2000,
872 volume = 128,
873 number = 8,
874 pages = {2935-2946}
875 }
876
877 @Article{wajsowicz:93,
878 author = {Wajsowicz, R.},
879 title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
880 FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
881 journal = {JCP},
882 year = 1993,
883 volume = 105,
884 number = 2,
885 pages = {333-338}
886 }
887
888 @Article{campin:02,
889 author = {Campin et al.},
890 title = {Conservation of properties in a free-surface model},
891 journal = {OM},
892 year = 2002,
893 note = {in preparation}
894 }
895
896 @Article{dm:95,
897 author = {Danabasoglu, G. and McWilliams J.C.},
898 title = {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
899 journal = {JC},
900 year = 1995,
901 volume = 8,
902 number = 12,
903 pages = {2967-2987}
904 }
905
906 @Article{ldd:97,
907 author = {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
908 title = {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
909 journal = {JPO},
910 year = 1997,
911 volume = 27,
912 number = 11,
913 pages = {2418-2447}
914 }
915
916 @Article{gkw:99,
917 author = {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
918 title = {Mechanisms for spreading of Mediterranean water in
919 coarse-resolution numerical models},
920 journal = {JPO},
921 year = 1999,
922 volume = 29,
923 number = 8,
924 pages = {1682-1700}
925 }
926
927 @Article{roe:85,
928 author = {Roe, P.L.},
929 title = {Some contributions to the modeling of discontinuous flows},
930 journal = {Lect. Notes Appl. Math.},
931 year = 1985,
932 volume = 22,
933 pages = {163-193}
934 }

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