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1 @string{angl = {Ann.\ Glaciol.}}
2 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
3 @string{bams = {Bull.~Am.~Met.~Soc.}}
4 @string{blm = {Bound.~Layer~Meteorol.}}
5 @string{climd = {Clim.~Dynamics}}
6 @string{cch = {Clim.\ Change}}
7 @string{jgr = {J.~Geophys.~Res.}}
8 @string{ijrs = {Int.~J.~Remote Sensing}}
9 @string{jas = {J.~Atmos.~Sci.}}
10 @string{jam = {J.~Appl.~Meteor.}}
11 @string{jpo = {J.~Phys.~Oceanogr.}}
12 @string{jclim = {J.~Clim.}}
13 @string{jcp = {J.~Comput.~Phys.}}
14 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
15 @string{jfm = {J.~Fluid Mech.}}
16 @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
17 @string{jms = {J.~Mar.~Sys.}}
18 @string{om = {Ocean Modelling}}
19 @string{gaos = {Global Atmos.~Ocean System}}
20 @string{grl = {Geophys.~Res.~Lett.}}
21 @string{dsr = {Deep Sea Res.}}
22 @string{dao = {Dyn.~Atmos.~Oceans}}
23 @string{mwr = {Mon.~Wea.~Rev.}}
24 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
25 @string{tel = {Tellus}}
26 @string{cup = {Cambridge University Press}}
27 @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
28 @string{ifremer = {IFREMER/CERSAT}}
29 @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
30 @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
31 @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
32 @string{mpi = {MPI f\"ur Meteorologie}}
33 @string{ecmwf = {ECMWF}}
34 @string{estec = {European Space Research and Technology Centre
35 (ESTEC)}}
36 @string{esa = {European Space Agency (ESA)}}
37 @string{eos = {Eos~Trans.\ AGU}}
38
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41 A. Griewank and K. Haigler and P. Newman},
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43 title = {Automatic differentiation of advanced GFD codes
44 for multidisciplinary design},
45 journal = {Journal on Computing Systems in Engineering},
46 volume = {3},
47 pages = {625--638},
48 }
49
50 @incollection{bis:94,
51 author = {C.H. Bishof},
52 year = 1994,
53 title = {Automatic differentiation, tangent linear models
54 and pseudo-adjoints},
55 booktitle = {High Performance Computing in the Geosciences},
56 series = {Series C: Mathematical and Physical Sciences},
57 pages = {59--80},
58 editor = {F.X. {Le Dimet}},
59 publisher = {Kluwer},
60 address = {Dordrecht, NL},
61 }
62
63 @techreport{bis-eta:94,
64 author = {C. Bishof and A. Carle and P. Khademi and
65 A. Maurer},
66 year = 1994,
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68 differentiation of FORTRAN 77 programs},
69 institution = {Argonne National Laboratory, Mathematics and
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71 type = {Argonne Preprint},
72 number = {ANL-MCS-P981-1194},
73 address = {ANL; 9700 South Cass Ave.;
74 Argonne (ILL), 90439; USA},
75 note = {http://www.mcs.anl.gov/autodiff/},
76 }
77
78 @ARTICLE{bugi-hill:06,
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80 title = {Equilibration mechanisms in an adjoint ocean general
81 circulation model},
82 journal = {Ocean Dynamics},
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86 pages = {51-61},
87 doi = {10.1007/s10236-005-0052-z},
88 }
89
90 @techreport{bis-roh:97,
91 author = {C. Bishof and L. Roh},
92 year = 1997,
93 title = {ADIC: An extensible automatic differentiation tool
94 for ANSI-C},
95 institution = {Argonne National Laboratory, Mathematics and
96 Computer Science Division},
97 type = {Argonne Preprint},
98 number = {ANL-MCS-P626-1196},
99 address = {ANL; 9700 South Cass Ave.;
100 Argonne (ILL), 90439; USA},
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102 }
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113 }
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145 }
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191 title = {Generalized stability theory. Part I:
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200 year = 1998,
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204 type = {Rapport Technique},
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206 address = {INRIA; 2004, route des Luciolis, B.P. 93;
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208 note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
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210
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215 journal = {Optimisation Methods and Software},
216 note = {in press},
217 }
218
219 @Article{fer-eta:05,
220 author = {D. Ferreira and J. Marshall and P. Heimbach},
221 year = 2005,
222 title = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223 using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224 journal = jpo,
225 volume = {35},
226 pages = {1891--1910},
227 }
228
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232 title = {Isopycnal mixing in ocean circulation models},
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237
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240 and J.C. McWilliams},
241 year = 1995,
242 title = {Parameterizing eddy-induced tracer transports in
243 ocean circulation models},
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248
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256 }
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260 year = 1999,
261 title = {Tangent linear and Adjoint Model Compiler.
262 Users manual 1.4 (TAMC Version 5.2)},
263 institution = {Massachusetts Institute of Technology},
264 type = {Report},
265 number = {~},
266 address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
267 02139; USA},
268 note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
269 }
270
271 @incollection{gie:00,
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274 N. Mahowald and R.G. Prinn and D.E. Hartley},
275 year = 2000,
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277 title = {Tangent linear and adjoint biogeochemical models},
278 publisher = {American Geophysical Union},
279 series = {Geophysical Monograph},
280 volume = {114},
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283 }
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297 title = {Practical optimization},
298 year = 1981,
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310 pages = {83--108},
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315
316 @Article{gri:92,
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319 complexity in reverse {A}utomatic {D}ifferentiation},
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380 JOURNAL = mwr,
381 YEAR = 1980,
382 VOLUME = 1,
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419 N. Mahowald and R.G. Prinn and D.E. Hartley},
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421 title = {Inverse methods in global biogeochemical cycles},
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463 author = {S. Levitus and T.P.Boyer},
464 title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
465 institution = {NOAA Atlas NESDIS 3},
466 year = 1994,
467 OPTkey = {},
468 OPTtype = {},
469 OPTnumber = {},
470 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
471 OPTmonth = {},
472 OPTnote = {},
473 OPTannote = {}
474 }
475
476
477 @TechReport{Levitus94,
478 author = {S. Levitus and T.P.Boyer},
479 title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
480 institution = {NOAA Atlas NESDIS 4},
481 year = 1994,
482 OPTkey = {},
483 OPTtype = {},
484 OPTnumber = {},
485 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
486 OPTmonth = {},
487 OPTnote = {},
488 OPTannote = {}
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512 }
513
514 @ARTICLE{losc-heim:06,
515 author = {M. Losch and P. Heimbach},
516 title = {Adjoint sensitivity of an ocean general circulation model
517 to bottom topography},
518 journal = jpo,
519 year = {2006},
520 volume = {{in press}},
521 url = {http://mitgcm.org/pdfs/Los2006a.pdf},
522 }
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534 }
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544 volume = {104, C12},
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555 volume = {102, C3},
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558
559 @Article{mars-eta:97b,
560 author = {J. Marshall and A. Adcroft and C. Hill and
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563 title = {Hydrostatic, quasi-hydrostatic and
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566 volume = {102, C3},
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573 title = {Efficient ocean modeling using
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576 volume = {18},
577 pages = {115--134},
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580 }
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590
591 %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
592 %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
593 %% (Available from Unidata or in PostScript form by anonymous FTP from
594 %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
595 %% a hypertext version of the User's Guide available at
596 %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
597 %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
598 %% also available.
599
600 @incollection{naum-etal:06,
601 Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
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603 Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
604 Pages = {~},
605 Publisher = {TU Delft},
606 Title = {Adjoint code by source transformation with OpenAD/F},
607 Year = {2006}}
608
609 @TechReport{rew:97,
610 author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
611 title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
612 An Interface for Data Access, Version 3},
613 institution = {Unidata Program Center},
614 type = {Report},
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616 year = 1997,
617 note = {http://www.unidata.ucar.edu/packages/netcdf/},
618 }
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649 volume = {C 284},
650 editor = {{D.L.T. Anderson and J. Willebrand}},
651 publisher = {Springer-Verlag},
652 address = {Berlin (Germany)},
653 }
654
655 @article{utke-etal:08,
656 Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
657 Date-Modified = {2007-11-19 10:15:08 -0500},
658 Journal = {{ACM} Transactions on Mathematical Software},
659 Pages = {~},
660 Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
661 Volume = {34(4)},
662 Year = {2008}}
663
664 @Article{DaSilva94,
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669 volume = {6},
670 publisher = {U.S. Department of Commerce},
671 address = {Washington, D.C. (USA)},
672 note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
673 url = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
674 }
675
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678 Q. Zhang and J. Marotzke and J. Marshall and
679 C. Hill},
680 year = 1997,
681 title = {The global ocean circulation estimated from
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684 institution = {Center for Global Change Science, Massachusetts
685 Institute of Technology},
686 type = {Technical Report},
687 number = {49},
688 pages = {40 pp.},
689 address = {Cambridge (MA), USA},
690 }
691
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