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1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2 @string{bams = {Bull.~Am.~Met.~Soc.}}
3 @string{blm = {Bound.~Layer~Meteorol.}}
4 @string{climd = {Clim.~Dynamics}}
5 @string{jgr = {J.~Geophys.~Res.}}
6 @string{ijrs = {Int.~J.~Remote Sensing}}
7 @string{jas = {J.~Atmos.~Sci.}}
8 @string{jam = {J.~Appl.~Meteor.}}
9 @string{jpo = {J.~Phys.~Oceanogr.}}
10 @string{jclim = {J.~Clim.}}
11 @string{jcp = {J.~Comput.~Phys.}}
12 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
13 @string{jfm = {J.~Fluid Mech.}}
14 @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
15 @string{jms = {J.~Mar.~Sys.}}
16 @string{om = {Ocean Modelling}}
17 @string{gaos = {Global Atmos.~Ocean System}}
18 @string{grl = {Geophys.~Res.~Lett.}}
19 @string{dsr = {Deep Sea Res.}}
20 @string{dao = {Dyn.~Atmos.~Oceans}}
21 @string{mwr = {Mon.~Wea.~Rev.}}
22 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
23 @string{tel = {Tellus}}
24 @string{cup = {Cambridge University Press}}
25 @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
26 @string{ifremer = {IFREMER/CERSAT}}
27 @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
28 @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
29 @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
30 @string{mpi = {MPI f\"ur Meteorologie}}
31 @string{ecmwf = {ECMWF}}
32 @string{estec = {European Space Research and Technology Centre
33 (ESTEC)}}
34 @string{esa = {European Space Agency (ESA)}}
35
36 @Article{bis-eta:92,
37 author = {C.H. Bishof and G.F. Corliss and L. Green and
38 A. Griewank and K. Haigler and P. Newman},
39 year = 1992,
40 title = {Automatic differentiation of advanced GFD codes
41 for multidisciplinary design},
42 journal = {Journal on Computing Systems in Engineering},
43 volume = {3},
44 pages = {625--638},
45 }
46
47 @incollection{bis:94,
48 author = {C.H. Bishof},
49 year = 1994,
50 title = {Automatic differentiation, tangent linear models
51 and pseudo-adjoints},
52 booktitle = {High Performance Computing in the Geosciences},
53 series = {Series C: Mathematical and Physical Sciences},
54 pages = {59--80},
55 editor = {F.X. {Le Dimet}},
56 publisher = {Kluwer},
57 address = {Dordrecht, NL},
58 }
59
60 @techreport{bis-eta:94,
61 author = {C. Bishof and A. Carle and P. Khademi and
62 A. Maurer},
63 year = 1994,
64 title = {The ADIFOR 2.0 system for the automatic
65 differentiation of FORTRAN 77 programs},
66 institution = {Argonne National Laboratory, Mathematics and
67 Computer Science Division},
68 type = {Argonne Preprint},
69 number = {ANL-MCS-P981-1194},
70 address = {ANL; 9700 South Cass Ave.;
71 Argonne (ILL), 90439; USA},
72 note = {http://www.mcs.anl.gov/autodiff/},
73 }
74
75 @techreport{bis-roh:97,
76 author = {C. Bishof and L. Roh},
77 year = 1997,
78 title = {ADIC: An extensible automatic differentiation tool
79 for ANSI-C},
80 institution = {Argonne National Laboratory, Mathematics and
81 Computer Science Division},
82 type = {Argonne Preprint},
83 number = {ANL-MCS-P626-1196},
84 address = {ANL; 9700 South Cass Ave.;
85 Argonne (ILL), 90439; USA},
86 note = {http://www.mcs.anl.gov/autodiff/},
87 }
88
89 @Article{cou-tal:87,
90 author = {P. Courtier and O. Talagrand},
91 year = 1987,
92 title = {Variational assimilation of meteorological
93 observations with the adjoint vorticity equation.
94 II: Numerical results},
95 journal = qjrms,
96 volume = {113},
97 pages = {1329--1347},
98 }
99
100 @Article{cou-tal:90,
101 author = {P. Courtier and O. Talagrand},
102 year = 1990,
103 title = {Variational assimilation of meteorological
104 observations with direct and adjoint shallow-water
105 equations},
106 journal = tel,
107 volume = {42A},
108 pages = {531--549},
109 }
110
111 @Article{cou-eta:94,
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113 A. Hollingsworth},
114 year = 1994,
115 title = {A strategy for operational implementation of
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117 journal = qjrms,
118 volume = {120},
119 pages = {1367--1387},
120 }
121
122 @Article{err:97,
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124 year = 1997,
125 title = {What is an adjoint model},
126 journal = bams,
127 volume = {78},
128 pages = {2577--2591},
129 }
130
131 @Article{far-moo:92,
132 author = {B.F. Farrell and A.M. Moore},
133 year = {1992},
134 title = {An adjoint method for obtaining the most rapidly
135 growing perturbation to oceanic flows},
136 journal = jpo,
137 volume = {22},
138 pages = {338--349},
139 }
140
141 @Article{far-ioa:96a,
142 author = {B.F. Farrell and P. Ioannou},
143 year = {1996a},
144 title = {Generalized stability theory. Part I:
145 Autonomous operators},
146 journal = jas,
147 volume = {53},
148 pages = {2025--2040},
149 }
150
151 @Article{far-ioa:96b,
152 author = {B.F. Farrell and P. Ioannou},
153 year = {1996b},
154 title = {Generalized stability theory. Part I:
155 Nonautonomous operators},
156 journal = jas,
157 volume = {53},
158 pages = {2041--2053},
159 }
160
161 @techreport{fau-pap:98,
162 author = {C. Faure and Y. Papegay},
163 year = 1998,
164 title = {Odyss{\'e}e User's Guide. Version 1.7},
165 institution = {Institut National de Recherche en Informatique
166 et en Automatique},
167 type = {Rapport Technique},
168 number = {0224},
169 address = {INRIA; 2004, route des Luciolis, B.P. 93;
170 06902 Sophia Antipolis Cedex; France},
171 note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
172 }
173
174 @Article{fau:00,
175 author = {C. Faure},
176 year = {2000},
177 title = {Adjoining strategies for multi-layered programs},
178 journal = {Optimisation Methods and Software},
179 note = {in press},
180 }
181
182 @Article{gen-mcw:90,
183 author = {P.R. Gent and J.C. McWilliams},
184 year = 1990,
185 title = {Isopycnal mixing in ocean circulation models},
186 journal = jpo,
187 volume = {20},
188 pages = {150--155},
189 }
190
191 @Article{gen-eta:95,
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193 and J.C. McWilliams},
194 year = 1995,
195 title = {Parameterizing eddy-induced tracer transports in
196 ocean circulation models},
197 journal = jpo,
198 volume = {25},
199 pages = {463--474},
200 }
201
202 @Article{gie-kam:98,
203 author = {R. Giering and T. Kaminski},
204 year = 1998,
205 title = {Recipes for adjoint code construction},
206 journal = {ACM Transactions on Mathematical Software},
207 volume = 24,
208 pages = {437--474},
209 }
210
211 @techreport{gie:99,
212 author = {R. Giering},
213 year = 1999,
214 title = {Tangent linear and Adjoint Model Compiler.
215 Users manual 1.4 (TAMC Version 5.2)},
216 institution = {Massachusetts Institute of Technology},
217 type = {Report},
218 number = {~},
219 address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
220 02139; USA},
221 note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
222 }
223
224 @incollection{gie:00,
225 author = {R. Giering},
226 editor = {P. Kasibhatla and M. Heimann and P. Rayner and
227 N. Mahowald and R.G. Prinn and D.E. Hartley},
228 year = 2000,
229 booktitle = {Inverse methods in global biogeochemical cycles},
230 title = {Tangent linear and adjoint biogeochemical models},
231 publisher = {American Geophysical Union},
232 series = {Geophysical Monograph},
233 volume = {114},
234 address = {Washington, DC},
235 pages = {33--48},
236 }
237
238 @Article{gil-lem:89,
239 author = {J.C. Gilbert and C. Lemar\'echal},
240 year = 1989,
241 title = {Some numerical experiments with variable-storage
242 quasi-Newton algorithms},
243 journal = {Math. Programming},
244 volume = {45},
245 pages = {407--435},
246 }
247
248 @book{gil-eta:81,
249 author = {P.E. Gill and W. Murray and M.H. Wright},
250 title = {Practical optimization},
251 year = 1981,
252 publisher = {Academic Press},
253 address = {London},
254 pages = {401 pp.},
255 }
256
257 @incollection{gri:89,
258 author = {A. Griewank},
259 year = 1989,
260 title = {On automatic differentiation},
261 booktitle = {Mathematical Programming: Recent Developments and
262 Applications},
263 pages = {83--108},
264 editor = {M. Iri and K. Tanabe},
265 publisher = {Kluwer},
266 address = {Dordrecht, NL},
267 }
268
269 @Article{gri:92,
270 author = {A.~Griewank},
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272 complexity in reverse {A}utomatic {D}ifferentiation},
273 journal = {Optimization Methods and Software},
274 year = {1992},
275 volume = {1},
276 pages = {35--54}
277 }
278
279 @book{gri:00,
280 author = {A. Griewank},
281 title = {Evaluating Derivatives. Principles and Techniques
282 of Algorithmic Differentiation},
283 year = 2000,
284 series = {Frontiers in Applied Mathematics},
285 volume = {19},
286 publisher = {SIAM},
287 address = {Philadelphia},
288 pages = {369 pp.},
289 }
290
291 @Article{hal-eta:82,
292 author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
293 year = 1982,
294 title = {Sensitivity analysis of a radiative-convective
295 model by the adjoint method},
296 journal = jas,
297 volume = {39},
298 pages = {2038--3050},
299 }
300
301 @Article{Haney,
302 author = {R.L. Haney},
303 title = {Surface thermal boundary conditions for ocean
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305 journal = jpo,
306 year = 1971,
307 volume = 1,
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310
311 @Article{held-suar:94,
312 author = {I.M. Held and M.J. Suarez},
313 year = {1994},
314 title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
315 journal = {Bulletin of the American Meteorological Society},
316 volume = {75(10)},
317 pages = {1825-1830}
318 }
319
320 @Article{hil-eta:01,
321 author = {C. Hill and M. Follows and V. Bugnion and
322 J. Marshall},
323 year = {2002},
324 title = {Spatial and Temporal Impacts of ocean general
325 circulation on carbon sequestration},
326 journal = {Global Biogeochemical Cycles},
327 note = {submitted},
328 }
329
330 @ARTICLE{hib80,
331 AUTHOR = "W. D. {Hibler, III}",
332 TITLE = "Modeling a Variable Thickness Sea Ice Cover",
333 JOURNAL = mwr,
334 YEAR = 1980,
335 VOLUME = 1,
336 PAGES = "1943-1973"
337 }
338
339 @Article{Holland75,
340 author = {W.R. Holland and L. B. Lin},
341 year = {1975a},
342 title = {On the origin of mesoscale eddies and their contribution
343 to the general circulation of the ocean. I. A preliminary
344 numerical experiment},
345 journal = jpo,
346 volume = {5},
347 pages = {642-657}
348 }
349
350 @Article{hol-lin:75b,
351 author = {W.R. Holland and L. B. Lin},
352 year = {1975b},
353 title = {On the origin of mesoscale eddies and their contribution
354 to the general circulation of the ocean. II. A parameter
355 study},
356 journal = jpo,
357 volume = {5},
358 pages = {658-669}
359 }
360
361 @book{kas-eta:00,
362 author = {P. Kasibhatla and M. Heimann and P. Rayner and
363 N. Mahowald and R.G. Prinn and D.E. Hartley},
364 year = 2000,
365 title = {Inverse methods in global biogeochemical cycles},
366 publisher = {American Geophysical Union},
367 series = {Geophysical Monograph},
368 volume = {114},
369 address = {Washington, DC},
370 pages = {324 pp.},
371 }
372
373 @Article{lar-eta:94,
374 author = {W.G. Large and J.C. McWilliams and S.C. Doney},
375 year = 1994,
376 title = {Oceanic vertical mixing: A review and a model
377 with nonlocal boundary layer parameterization},
378 journal = {Rev.~Geophys.},
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380 pages = {363--403},
381 }
382
383 @Article{lar-eta:97,
384 author = {W.G. Large and G. Danabasoglu and S.C. Doney
385 and J.C. McWilliams},
386 year = 1997,
387 title = {Sensitivity to surface forcing and boundary layer
388 mixing in a global ocean model: annual-mean
389 climatology},
390 journal = jpo,
391 volume = {27},
392 pages = {2418--2447},
393 }
394
395 @Article{led-tal:86,
396 author = {F.-X. {Le Dimet} and O. Talagrand},
397 year = 1986,
398 title = {Variational algorithms for analysis and
399 assimilation of meteorological observations:
400 theoretical aspects},
401 journal = tel,
402 volume = {38A},
403 pages = {97--110},
404 }
405
406 @TechReport{lev:94a,
407 author = {S. Levitus and T.P.Boyer},
408 title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
409 institution = {NOAA Atlas NESDIS 3},
410 year = 1994,
411 OPTkey = {},
412 OPTtype = {},
413 OPTnumber = {},
414 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
415 OPTmonth = {},
416 OPTnote = {},
417 OPTannote = {}
418 }
419
420
421 @TechReport{Levitus94,
422 author = {S. Levitus and T.P.Boyer},
423 title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
424 institution = {NOAA Atlas NESDIS 4},
425 year = 1994,
426 OPTkey = {},
427 OPTtype = {},
428 OPTnumber = {},
429 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
430 OPTmonth = {},
431 OPTnote = {},
432 OPTannote = {}
433 }
434
435
436 @Article{lew-der:85,
437 author = {J. Lewis and J. Derber},
438 year = {1985},
439 title = {The use of adjoint equations to solve a variational
440 adjustment problem with advective constraints},
441 journal = {Tellus},
442 volume = {37A},
443 pages = {309--322},
444 }
445
446 @techreport{lon:88,
447 author = {R.B. Long},
448 year = 1988,
449 title = {Notes on assimilating observations into
450 numerical models},
451 institution = {Delft Hydraulics},
452 type = {Report},
453 number = {~},
454 pages = {38 pp.},
455 address = {Delft (NL)},
456 }
457
458 @Article{maro-wun:93,
459 author = {J. Marotzke and C. Wunsch},
460 year = 1993,
461 title = {Finding the steady state of a general circulation
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464 journal = jgr,
465 volume = {98, C11},
466 pages = {20,149--20,167},
467 }
468
469 @Article{maro-eta:99,
470 author = {J. Marotzke and R. Giering and K.Q. Zhang and
471 D. Stammer and C. Hill and T. Lee},
472 year = 1999,
473 title = {Construction of the adjoint MIT ocean general
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475 transport variability},
476 journal = jgr,
477 volume = {104, C12},
478 pages = {29,529--29,547},
479 }
480
481 @Article{mars-eta:97a,
482 author = {J. Marshall and C. Hill and L. Perelman and
483 A. Adcroft},
484 year = {1997a},
485 title = {Hydrostatic, quasi-hydrostatic and
486 nonhydrostatic ocean modeling},
487 journal = jgr,
488 volume = {102, C3},
489 pages = {5,733--5,752},
490 }
491
492 @Article{mars-eta:97b,
493 author = {J. Marshall and A. Adcroft and C. Hill and
494 L. Perelman and C. Heisey},
495 year = {1997b},
496 title = {Hydrostatic, quasi-hydrostatic and
497 nonhydrostatic ocean modeling},
498 journal = jgr,
499 volume = {102, C3},
500 pages = {5,753--5,766},
501 }
502
503 @Article{mars-sha:98,
504 author = {J. Marshall and H. Jones and C. Hill},
505 year = 1998,
506 title = {Efficient ocean modeling using
507 non-hydrostatic algorithms},
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509 volume = {18},
510 pages = {115--134},
511 }
512
513 @Article{mcw:96,
514 author = {J. McWilliams},
515 year = 1996,
516 title = {Modeling the oceanic general circulation},
517 journal = arfm,
518 volume = {28},
519 pages = {215--248},
520 }
521
522 %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
523 %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
524 %% (Available from Unidata or in PostScript form by anonymous FTP from
525 %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
526 %% a hypertext version of the User's Guide available at
527 %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
528 %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
529 %% also available.
530
531 @TechReport{rew:97,
532 author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
533 title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
534 An Interface for Data Access, Version 3},
535 institution = {Unidata Program Center},
536 type = {Report},
537 address = {Boulder, Colorado},
538 year = 1997,
539 note = {http://www.unidata.ucar.edu/packages/netcdf/},
540 }
541
542
543 @Article{res-eta:98,
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545 year = 1998,
546 title = {Circumventing storage limitations in variational
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550 pages = {1586--1605},
551 }
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567 booktitle = {Oceanic circulation models:
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570 series = {NATO ASI Series},
571 volume = {C 284},
572 editor = {{D.L.T. Anderson and J. Willebrand}},
573 publisher = {Springer-Verlag},
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575 }
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587
588 @techreport{sta-eta:97,
589 author = {D. Stammer and C. Wunsch and R. Giering and
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592 year = 1997,
593 title = {The global ocean circulation estimated from
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596 institution = {Center for Global Change Science, Massachusetts
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599 number = {49},
600 pages = {40 pp.},
601 address = {Cambridge (MA), USA},
602 }
603
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613 note = {in press},
614 }
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627 year = 1987,
628 title = {Variational assimilation of meteorological
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635
636 @Article{tal:97,
637 author = {O. Talagrand},
638 year = 1997,
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641 volume = {75},
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644
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646 author = {A. Tarantola},
647 title = {Inverse Problem Theory: Methods for data fitting
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649 year = 1987,
650 publisher = {Elsevier},
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654
655 @techreport{tha:87,
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657 year = 1987,
658 title = {Three lectures on fitting numerical models to
659 observations},
660 institution = {GKSS},
661 type = {Report},
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663 pages = {64 pp.},
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665 }
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690 to measurements},
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701 journal = jgr,
702 volume = {99, C5},
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715
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737
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