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 o add references for the new Biogeochemistry tutorial

1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2 @string{bams = {Bull.~Am.~Met.~Soc.}}
3 @string{blm = {Bound.~Layer~Meteorol.}}
4 @string{climd = {Clim.~Dynamics}}
5 @string{jgr = {J.~Geophys.~Res.}}
6 @string{ijrs = {Int.~J.~Remote Sensing}}
7 @string{jas = {J.~Atmos.~Sci.}}
8 @string{jpo = {J.~Phys.~Oceanogr.}}
9 @string{jclim = {J.~Clim.}}
10 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
11 @string{jfm = {J.~Fluid Mech.}}
12 @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
13 @string{jms = {J.~Mar.~Sys.}}
14 @string{om = {Ocean Modelling}}
15 @string{gaos = {Global Atmos.~Ocean System}}
16 @string{grl = {Geophys.~Res.~Lett.}}
17 @string{dsr = {Deep Sea Res.}}
18 @string{dao = {Dyn.~Atmos.~Oceans}}
19 @string{mwr = {Mon.~Wea.~Rev.}}
20 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
21 @string{tel = {Tellus}}
22 @string{cup = {Cambridge University Press}}
23 @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
24 @string{ifremer = {IFREMER/CERSAT}}
25 @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
26 @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
27 @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
28 @string{mpi = {MPI f\"ur Meteorologie}}
29 @string{ecmwf = {ECMWF}}
30 @string{estec = {European Space Research and Technology Centre
31 (ESTEC)}}
32 @string{esa = {European Space Agency (ESA)}}
33
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38 title = {Automatic differentiation of advanced GFD codes
39 for multidisciplinary design},
40 journal = {Journal on Computing Systems in Engineering},
41 volume = {3},
42 pages = {625--638},
43 }
44
45 @incollection{bis:94,
46 author = {C.H. Bishof},
47 year = 1994,
48 title = {Automatic differentiation, tangent linear models
49 and pseudo-adjoints},
50 booktitle = {High Performance Computing in the Geosciences},
51 series = {Series C: Mathematical and Physical Sciences},
52 pages = {59--80},
53 editor = {F.X. {Le Dimet}},
54 publisher = {Kluwer},
55 address = {Dordrecht, NL},
56 }
57
58 @techreport{bis-eta:94,
59 author = {C. Bishof and A. Carle and P. Khademi and
60 A. Maurer},
61 year = 1994,
62 title = {The ADIFOR 2.0 system for the automatic
63 differentiation of FORTRAN 77 programs},
64 institution = {Argonne National Laboratory, Mathematics and
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66 type = {Argonne Preprint},
67 number = {ANL-MCS-P981-1194},
68 address = {ANL; 9700 South Cass Ave.;
69 Argonne (ILL), 90439; USA},
70 note = {http://www.mcs.anl.gov/autodiff/},
71 }
72
73 @techreport{bis-roh:97,
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75 year = 1997,
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78 institution = {Argonne National Laboratory, Mathematics and
79 Computer Science Division},
80 type = {Argonne Preprint},
81 number = {ANL-MCS-P626-1196},
82 address = {ANL; 9700 South Cass Ave.;
83 Argonne (ILL), 90439; USA},
84 note = {http://www.mcs.anl.gov/autodiff/},
85 }
86
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96 }
97
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128
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132 title = {An adjoint method for obtaining the most rapidly
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141 year = {1996a},
142 title = {Generalized stability theory. Part I:
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145 volume = {53},
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158
159 @techreport{fau-pap:98,
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161 year = 1998,
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165 type = {Rapport Technique},
166 number = {0224},
167 address = {INRIA; 2004, route des Luciolis, B.P. 93;
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169 note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
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192 year = 1995,
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196 volume = {25},
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199
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207 }
208
209 @techreport{gie:99,
210 author = {R. Giering},
211 year = 1999,
212 title = {Tangent linear and Adjoint Model Compiler.
213 Users manual 1.4 (TAMC Version 5.2)},
214 institution = {Massachusetts Institute of Technology},
215 type = {Report},
216 number = {~},
217 address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
218 02139; USA},
219 note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
220 }
221
222 @incollection{gie:00,
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225 N. Mahowald and R.G. Prinn and D.E. Hartley},
226 year = 2000,
227 booktitle = {Inverse methods in global biogeochemical cycles},
228 title = {Tangent linear and adjoint biogeochemical models},
229 publisher = {American Geophysical Union},
230 series = {Geophysical Monograph},
231 volume = {114},
232 address = {Washington, DC},
233 pages = {33--48},
234 }
235
236 @Article{gil-lem:89,
237 author = {J.C. Gilbert and C. Lemar\'echal},
238 year = 1989,
239 title = {Some numerical experiments with variable-storage
240 quasi-Newton algorithms},
241 journal = {Math. Programming},
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244 }
245
246 @book{gil-eta:81,
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249 year = 1981,
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264 address = {Dordrecht, NL},
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281 year = 2000,
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284 publisher = {SIAM},
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294 journal = jas,
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298
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312 title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
313 journal = {Bulletin of the American Meteorological Society},
314 volume = {75(10)},
315 pages = {1825-1830}
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320 J. Marshall},
321 year = {2002},
322 title = {Spatial and Temporal Impacts of ocean general
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324 journal = {Global Biogeochemical Cycles},
325 note = {submitted},
326 }
327
328 @ARTICLE{hib80,
329 AUTHOR = "W. D. {Hibler, III}",
330 TITLE = "Modeling a Variable Thickness Sea Ice Cover",
331 JOURNAL = mwr,
332 YEAR = 1980,
333 VOLUME = 1,
334 PAGES = "1943-1973"
335 }
336
337 @Article{Holland75,
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340 title = {On the origin of mesoscale eddies and their contribution
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346 }
347
348 @Article{hol-lin:75b,
349 author = {W.R. Holland and L. B. Lin},
350 year = {1975b},
351 title = {On the origin of mesoscale eddies and their contribution
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357 }
358
359 @book{kas-eta:00,
360 author = {P. Kasibhatla and M. Heimann and P. Rayner and
361 N. Mahowald and R.G. Prinn and D.E. Hartley},
362 year = 2000,
363 title = {Inverse methods in global biogeochemical cycles},
364 publisher = {American Geophysical Union},
365 series = {Geophysical Monograph},
366 volume = {114},
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404 @TechReport{lev:94a,
405 author = {S. Levitus and T.P.Boyer},
406 title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
407 institution = {NOAA Atlas NESDIS 3},
408 year = 1994,
409 OPTkey = {},
410 OPTtype = {},
411 OPTnumber = {},
412 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
413 OPTmonth = {},
414 OPTnote = {},
415 OPTannote = {}
416 }
417
418
419 @TechReport{Levitus94,
420 author = {S. Levitus and T.P.Boyer},
421 title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
422 institution = {NOAA Atlas NESDIS 4},
423 year = 1994,
424 OPTkey = {},
425 OPTtype = {},
426 OPTnumber = {},
427 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
428 OPTmonth = {},
429 OPTnote = {},
430 OPTannote = {}
431 }
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444 @techreport{lon:88,
445 author = {R.B. Long},
446 year = 1988,
447 title = {Notes on assimilating observations into
448 numerical models},
449 institution = {Delft Hydraulics},
450 type = {Report},
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465 }
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479 @Article{mars-eta:97a,
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488 }
489
490 @Article{mars-eta:97b,
491 author = {J. Marshall and A. Adcroft and C. Hill and
492 L. Perelman and C. Heisey},
493 year = {1997b},
494 title = {Hydrostatic, quasi-hydrostatic and
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497 volume = {102, C3},
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499 }
500
501 @Article{mars-sha:98,
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518 }
519
520 %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
521 %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
522 %% (Available from Unidata or in PostScript form by anonymous FTP from
523 %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
524 %% a hypertext version of the User's Guide available at
525 %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
526 %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
527 %% also available.
528
529 @TechReport{rew:97,
530 author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
531 title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
532 An Interface for Data Access, Version 3},
533 institution = {Unidata Program Center},
534 type = {Report},
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536 year = 1997,
537 note = {http://www.unidata.ucar.edu/packages/netcdf/},
538 }
539
540
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570 editor = {{D.L.T. Anderson and J. Willebrand}},
571 publisher = {Springer-Verlag},
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586 @techreport{sta-eta:97,
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594 institution = {Center for Global Change Science, Massachusetts
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598 pages = {40 pp.},
599 address = {Cambridge (MA), USA},
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601
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656 title = {Three lectures on fitting numerical models to
657 observations},
658 institution = {GKSS},
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735
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