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revision 1.18 by edhill, Tue Jul 5 19:51:17 2005 UTC revision 1.42 by mlosch, Wed Mar 2 13:18:42 2011 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 30  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 69  Line 74 
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bugi-hill:06,
79      author = {V. Bugnion and C. Hill},
80      title = {Equilibration mechanisms in an adjoint ocean general
81               circulation model},
82      journal = {Ocean Dynamics},
83      year = {2006},
84      volume = {56},
85      number = {1},
86      pages = {51-61},
87      doi   = {10.1007/s10236-005-0052-z},
88    }
89    
90  @techreport{bis-roh:97,  @techreport{bis-roh:97,
91   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 133 
133   volume         = {120},   volume         = {120},
134   pages          = {1367--1387},   pages          = {1367--1387},
135                    }                    }
136    
137    @ARTICLE{durr:91,
138      author = {Dale R. Durran},
139      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140               to Leapfrog Time Differencing},
141      journal = mwr,
142      year = {1991},
143      volume = {119},
144      pages  = {702-720},
145    }
146    
147    
148    @ARTICLE{dutk-etal:06,
149      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150      title = {Controls on ocean productivity and air-sea carbon flux:
151               An adjoint model sensitivity study},
152      journal = grl,
153      year = {2006},
154      volume = {33},
155      pages  = {L02603},
156      doi    = {10.1029/2005GL024987},
157    }
158    
159  @Article{err:97,  @Article{err:97,
160   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 177  Line 216 
216   note           = {in press},   note           = {in press},
217                    }                    }
218    
219    @Article{fer-eta:05,
220     author         = {D. Ferreira and J. Marshall and P. Heimbach},
221     year           = 2005,
222     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal        = jpo,
225     volume         = {35},
226     pages          = {1891--1910},
227                      }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P.R. Gent and J.C. McWilliams},
242   year           = 1990,   year           = 1990,
# Line 326  Line 386 
386                    }                    }
387    
388  @ARTICLE{hib80,  @ARTICLE{hib80,
389    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, William D.},
390    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
391    JOURNAL     = mwr,    JOURNAL     = mwr,
392    YEAR        = 1980,    YEAR        = 1980,
# Line 356  Line 416 
416   pages          = {658-669}   pages          = {658-669}
417                    }                    }
418    
419    @Article{jam-oze:86,
420     author         = {B.M. Jamart and J. Ozer},
421     year           = {1986},
422     title          = {Numerical boundary layers and spurious residual flows},
423     journal        = jgr,
424     volume         = {91},
425     pages          = {10,621-10,631}
426                      }
427    
428  @book{kas-eta:00,  @book{kas-eta:00,
429   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
430                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 452  Line 521 
521   pages          = {38 pp.},   pages          = {38 pp.},
522   address        = {Delft (NL)},   address        = {Delft (NL)},
523                    }                    }
524    
525    @ARTICLE{losc-heim:06,
526      author =       {Martin Losch and Patrick Heimbach},
527      title =        {Adjoint Sensitivity of an Ocean General Circulation
528                      Model to Bottom Topography},
529      journal =      jpo,
530      year =         2007,
531      volume =       37,
532      doi =          {10.1175/JPO3017.1},
533      number =       2,
534      pages =        {377--393},
535      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
536    }
537    
538    
539  @Article{maro-wun:93,  @Article{maro-wun:93,
540   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 498  Line 581 
581   pages          = {5,753--5,766},   pages          = {5,753--5,766},
582                    }                    }
583    
584  @Article{mars-sha:98,  @Article{mars-eta:98,
585   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
586   year           = 1998,   year           = 1998,
587   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 506  Line 589 
589   journal        = jms,   journal        = jms,
590   volume         = {18},   volume         = {18},
591   pages          = {115--134},   pages          = {115--134},
592     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
593     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
594                    }                    }
595    
596  @Article{mcw:96,  @Article{mol:09,
597   author         = {J. McWilliams},   author         = {Andrea Molod},
598   year           = 1996,   year           = 2009,
599   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
600   journal        = arfm,                     algorithm and tests},
601   volume         = {28},   journal        = tel,
602   pages          = {215--248},   volume         = {61A},
603     pages          = {381--393},
604                    }                    }
605    
606  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
# Line 525  Line 611 
611  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
612  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
613  %%   also available.  %%   also available.
614      
615    @incollection{naum-etal:06,
616            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
617            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
618            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
619            Pages = {~},
620            Publisher = {TU Delft},
621            Title = {Adjoint code by source transformation with OpenAD/F},
622            Year = {2006}}
623    
624    @Article{orl:76,
625     author         = {I. Orlanski},
626     year           = 1976,
627     title          = {A simple boundary condition for unbounded hyperbolic flows},
628     journal        = jcp,
629     volume         = {21},
630     pages          = {251--269},
631                    }
632    
633    @Article{pal-rom:97,
634     author         = {T. Paluszkiewicz and R.D. Romea},
635     year           = 1997,
636     title          = {A one-dimensional model for the parameterization
637                      of deep convection in the ocean},
638     journal        = dao,
639     volume         = {26},
640     pages          = {95--130},
641                      }
642    
643  @TechReport{rew:97,  @TechReport{rew:97,
644    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
# Line 572  Line 686 
686   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
687                    }                    }
688    
689    @article{utke-etal:08,
690            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
691            Date-Modified = {2007-11-19 10:15:08 -0500},
692            Journal = {{ACM} Transactions on Mathematical Software},
693            Pages = {~},
694            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
695            Volume = {34(4)},
696            Year = {2008}}
697    
698  @Article{DaSilva94,  @Article{DaSilva94,
699   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
700   year           = 1994,   year           = 1994,
# Line 581  Line 704 
704   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
705   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
706   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
707     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
708                    }                    }
709    
710  @techreport{sta-eta:97,  @techreport{stam-etal:97,
711   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
712                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
713                    C. Hill},                    C. Hill},
# Line 599  Line 723 
723   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
724                    }                    }
725    
726  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
727   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
728                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
729                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
730   year           = 2001,    year = {2002a},
731   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
732                    estimated from ocean observations and a general    pages = {3118},
733                    circulation model},    doi   = {10.1029/2001JC000888},
734   journal        = jgr,  }
735   note           = {in press},  
                   }  
736    
737  @Article{Stommel66,  @Article{Stommel66,
738   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 894 
894    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
895    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
896                   modeling},                   modeling},
897    journal =      {JGR},    journal =      jgr,
898    year =         1997,    year =         1997,
899    volume =       102,    volume =       102,
900    number =       {C3},    number =       {C3},
901    pages =        {5733-5752}    pages =        {5733-5752},
902      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
903  }  }
904    
905  @Article{marshall:97b,  @Article{marshall:97b,
906    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
907    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
908                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
909    journal =      {JGR},    journal =      jgr,
910    year =         1997,    year =         1997,
911    volume =       102,    volume =       102,
912    number =       {C3},    number =       {C3},
913    pages =        {5753-5766}    pages =        {5753-5766},
914      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
915  }  }
916    
917  @Article{adcroft:97,  @Article{adcroft:97,
918    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
919    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
920                    coordinate ocean model},                    coordinate ocean model},
921    journal =      {MWR},    journal =      mwr,
922    year =         1997,    year =         1997,
923    volume =       125,    volume =       125,
924    pages =        {2293-2315}    pages =        {2293-2315},
925      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
926      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
927  }  }
928    
929  @Article{adcroft:04,  @Article{adcroft:04a,
930    author =       {Adcroft, A.J. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
931    title =        {Re-scaled height coordinates for accurate representation    title =        {Re-scaled height coordinates for accurate representation
932                    of free-surface flows in ocean circulation models},                    of free-surface flows in ocean circulation models},
933    journal =      om,    journal =      om,
934    year =         2004,    year =         2004,
935    note =         {in press}    volume =       7,
936      pages =        {269-284},
937      doi   =        {10.1016/j.ocemod.2003.09.003},
938    }
939    
940    @Article{adcroft:04b,
941      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
942      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
943                      on the Expanded Spherical Cube},
944      journal =      mwr,
945      year =         2004,
946      volume =       132,
947      pages =        {2845-2863},
948      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
949      doi     =      {10.1175/MWR2823.1},
950    }
951    
952    @inproceedings{adcroft:04c,
953      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
954                      and P. Heimbach},
955      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
956      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
957                     Recent developments in numerical methods for atmosphere and
958                     ocean modelling},
959      year =         2004,
960      pages =        {139-149},
961      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
962     publisher =     ecmwf
963    }
964    
965    @Article{marshall:04,
966      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
967      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
968      journal =      mwr,
969      year =         2004,
970      volume =       132,
971      pages =        {2882-2894},
972      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
973      doi    =       {10.1175/MWR2835.1},
974  }  }
975    
976  @Article{visbeck:97,  @Article{visbeck:97,
977    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
978    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
979                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
980    journal =      {JPO},    journal =      jpo,
981    year =         1997,    year =         1997,
982    volume =       27,    volume =       27,
983    number =       3,    number =       3,
# Line 832  Line 997 
997    pages =        {1-51}    pages =        {1-51}
998  }  }
999    
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   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
1000  @Article{mjn:99,  @Article{mjn:99,
1001    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
1002    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 865  Line 1021 
1021    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
1022    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
1023                    at both high and low resolutions},                    at both high and low resolutions},
1024    journal =      {MWR},    journal =      mwr,
1025    year =         1999,    year =         1999,
1026    volume =       127,    volume =       127,
1027    pages =        {1928-1936}    pages =        {1928-1936},
1028      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1029      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1030  }  }
1031    
1032  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 883  Line 1041 
1041  @Article{wardle:00,  @Article{wardle:00,
1042    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
1043    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
1044    journal =      {JPO},    journal =      jpo,
1045    year =         2000,    year =         2000,
1046    volume =       30,    volume =       30,
1047    number =       10,    number =       10,
# Line 900  Line 1058 
1058  }  }
1059    
1060  @Article{adcroft:02,  @Article{adcroft:02,
1061    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1062    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1063    journal =      om,    journal =      om,
1064    year =         2002,    year =         2002,
# Line 918  Line 1076 
1076    volume =       17    volume =       17
1077  }  }
1078    
1079    @Article{miller_white:84,
1080      author =       {Miller, M. J. and White, A. A.},
1081      title =        {On the non-hydrostatic equations in pressure
1082                      and sigma coordiantes},
1083      journal =      qjrms,
1084      year =         1984,
1085      volume =       110,
1086      pages =        {515-533}
1087    }
1088    
1089    @Article{white:89,
1090      author =       {White, A. A.},
1091      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1092      journal =      qjrms,
1093      year =         1989,
1094      volume =       115,
1095      pages =        {1243-1251}
1096    }
1097    
1098  @Article{adcroft:98,  @Article{adcroft:98,
1099    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1100    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 941  Line 1118 
1118    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1119    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1120                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1121    journal =      {MWR},    journal =      mwr,
1122    year =         2000,    year =         2000,
1123    volume =       128,    volume =       128,
1124    number =       8,    number =       8,
# Line 952  Line 1129 
1129    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1130    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1131                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1132    journal =      {JCP},    journal =      jcp,
1133    year =         1993,    year =         1993,
1134    volume =       105,    volume =       105,
1135    number =       2,    number =       2,
# Line 971  Line 1148 
1148  @Article{dm:95,  @Article{dm:95,
1149    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1150    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1151    journal =      {JC},    journal =      jclim,
1152    year =         1995,    year =         1995,
1153    volume =       8,    volume =       8,
1154    number =       12,    number =       12,
# Line 981  Line 1158 
1158  @Article{ldd:97,  @Article{ldd:97,
1159    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1160    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1161    journal =      {JPO},    journal =      jpo,
1162    year =         1997,    year =         1997,
1163    volume =       27,    volume =       27,
1164    number =       11,    number =       11,
# Line 992  Line 1169 
1169    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1170    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1171                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1172    journal =      {JPO},    journal =      jpo,
1173    year =         1999,    year =         1999,
1174    volume =       29,    volume =       29,
1175    number =       8,    number =       8,
# Line 1023  Line 1200 
1200  }  }
1201    
1202  @Article{molteni:03,  @Article{molteni:03,
1203    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1204    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1205                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1206                    multidecadal experiments},                    multidecadal experiments},
1207    journal =      climd,    journal =      climd,
1208    year =         2003,    year =         2003,
# Line 1034  Line 1211 
1211  }  }
1212    
1213  @Article{jiang99,  @Article{jiang99,
1214    author =       {Shi Jiang and Peter H. Stone and Paola    author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
                   Malanotte-Rizzoli},  
1215    title =        {An Assessment of the {G}eophysical {F}luid    title =        {An Assessment of the {G}eophysical {F}luid
1216                    {D}ynamics {L}aboratory Ocean Model with Coarse                    {D}ynamics {L}aboratory Ocean Model with Coarse
1217                    Resolution: Annual-Mean Climatology},                    Resolution: Annual-Mean Climatology},
# Line 1096  Line 1272 
1272  }  }
1273    
1274  @ARTICLE{zha98a,  @ARTICLE{zha98a,
1275    AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele    AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
1276                   and D. A. Rothrock",                   and D. A. Rothrock",
1277    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1278    JOURNAL     = jpo,    JOURNAL     = jpo,
# Line 1125  Line 1301 
1301  }  }
1302    
1303  @ARTICLE{hib79,  @ARTICLE{hib79,
1304    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, W. D.},
1305    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1306    JOURNAL     = jpo,    JOURNAL     = jpo,
1307    YEAR        = 1979,    YEAR        = 1979,
# Line 1134  Line 1310 
1310  }  }
1311    
1312  @ARTICLE{fla92,  @ARTICLE{fla92,
1313    AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",    AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1314    TITLE       = "Modeling pack ice as a cavitating fluid",    TITLE       = "Modeling pack ice as a cavitating fluid",
1315    JOURNAL     = jpo,    JOURNAL     = jpo,
1316    YEAR        = 1992,    YEAR        = 1992,
# Line 1148  Line 1324 
1324    JOURNAL     = jpo,    JOURNAL     = jpo,
1325    YEAR        = 1997,    YEAR        = 1997,
1326    VOLUME      = 27,    VOLUME      = 27,
1327    PAGES       = "1849-1867"    PAGES       = "1849--1867"
1328    }
1329    
1330    @Article{hun01,
1331      author =       {Elizabeth C. Hunke},
1332      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1333                      Model: Linearization Issues},
1334      journal =      jcp,
1335      year =         2001,
1336      volume =       170,
1337      pages =        {18--38},
1338      doi =          {10.1006/jcph.2001.6710}
1339  }  }
1340    
1341  @ARTICLE{zha00,  @ARTICLE{zha00,
# Line 1157  Line 1344 
1344    JOURNAL     = jgr,    JOURNAL     = jgr,
1345    YEAR        = 2000,    YEAR        = 2000,
1346    VOLUME      = 105,    VOLUME      = 105,
1347    PAGES       = "3325-3338"    PAGES       = "3325--3338"
1348  }  }
1349    
1350  @Article{Shapiro_70,  @Article{Shapiro_70,
# Line 1170  Line 1357 
1357    pages =        {359--387},    pages =        {359--387},
1358  }  }
1359    
1360    @TechReport{Dutkiewicz_etal_05,
1361      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1362      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1363                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1364                      in Climate Change Studies, Report 122},
1365      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1366      year =         {2005},
1367      OPTnumber =    {122},
1368      address =      {Cambridge, MA},
1369      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1370    }
1371    
1372    @Article{Follows_etal_05,
1373      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1374      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1375                      Biogeochemistry Models},
1376      journal =      {Ocean Modeling},
1377      year =         {{in press}},
1378      OPTkey =       {},
1379      OPTvolume =    {},
1380      OPTnumber =    {},
1381      OPTpages =     {},
1382    }
1383    
1384    @Article{McKinley_etal_04,
1385      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1386      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1387                      Equatorial Pacific and the North Atlantic},
1388      journal =      {Global Biogeochemical Cycles},
1389      year =         {2004},
1390      OPTkey =       {},
1391      volume =       {18},
1392      number =       {doi:10.1029/2003GB002179},
1393      OPTpages =     {},
1394    }
1395    
1396    @TechReport{Trenberth_etal_89,
1397      author =       {K. Trenberth and J. Olson and W. Large},
1398      title =        {A global wind stress climatology based on ECMWF analyses},
1399      institution =  {NCAR},
1400      year =         {1989},
1401      OPTkey =       {},
1402      OPTtype =      {},
1403      number =       {NCAR/TN-338+STR},
1404      address =      {Boulder, CO},
1405      OPTmonth =     {},
1406    }
1407    
1408    @Article{Wanninkhof_92,
1409      author =       {R. Wanninkhof},
1410      title =        {Relationship between wind speed and gas exchange over the ocean},
1411      journal =      jgr,
1412      year =         {1992},
1413      OPTkey =       {},
1414      volume =       {97},
1415      OPTnumber =    {},
1416      pages =        {7373--7382},
1417      OPTmonth =     {},
1418    }
1419    
1420    @incollection{black:77,
1421     author       = {A. K. Blackadar},
1422     year         = {1977},
1423     title        = {High Resolution Models of the Planetary Boundary Layer.},
1424     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1425     editor       = {Pfafflin and Zeigler},
1426     publisher    = {Gordon and Breach, Scientific Publishers}
1427    }
1428    
1429    @Article{chou:92,
1430     author       = {M-D. Chou},
1431     year         = {1992},
1432     title        = {A solar radiation model for use in climate studies.},
1433     journal      = jas,
1434     volume       = {49},
1435     pages        = {762-772}
1436    }
1437    
1438    @Article{chou:90,
1439     author       = {M-D. Chou},
1440     year         = {1990},
1441     title        = {Parameterizations for the absorption of solar radiation
1442                       by O$_2$ and CO$_2$ with applications to climate studies.},
1443     journal      = jclim,
1444     volume       = {3},
1445     pages        = {209-217}
1446    }
1447    
1448    @techreport{chsz:94,
1449     author       = {M.-D. Chou and M.J.Suarez},
1450     year         = {1994},
1451     title        = {An efficient thermal infrared radiation parameterization
1452    for use in general circulation models},
1453     institution  = {National Aeronautics and Space Administration},
1454     type         = {NASA Technical Memorandum},
1455     number       = {104606-Vol 3},
1456     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1457     note         = {http://www.gmao.nasa.gov/}
1458    }
1459    
1460    @Article{clarke:70,
1461     author       = {R. H. Clarke},
1462     year         = {1970},
1463     title        = {Observational studies in the atmospheric boundary layer.},
1464     journal      = qjrms,
1465     volume       = {96},
1466     pages        = {91-114}
1467    }
1468    
1469    @Article{deftow:94,
1470     author       = { R. S. Defries and J. R. G. Townshend},
1471     year         = {1994},
1472     title        = {NDVI-derived Land Cover Classification at Global Scales. },
1473     journal      = {Int'l J. Rem. Sens.} ,
1474     volume       = {15},
1475     pages        = {3567-3586}
1476    }
1477    
1478    @Article{dorsell:89,
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1480     year         = {1989},
1481     title        = {A global climatology of albedo, roughness length and stomatal
1482    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1483     journal      = jam,
1484     volume       = {28},
1485     pages        = {833-855}
1486    }
1487    
1488    @Article{helflab:88,
1489     author       = { H. M. Helfand and J. C. Labraga},
1490     year         = {1988},
1491     title        = { Design of a non-singular level 2.5 second-order closure
1492    model for the prediction of atmospheric turbulence. },
1493     journal      = jas,
1494     volume       = {45},
1495     pages        = {113-132}
1496    }
1497    
1498    @inproceedings{helfetal:91,
1499     author       = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1500     year         = {1991},
1501     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1502     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1503     year         = 1991,
1504     pages        = {406-425},
1505     publisher    = {American Meteorological Society}
1506    }
1507    
1508    @Article{helfschu:95,
1509     author       = {H. M. Helfand and S. D. Schubert},
1510     year         = {1995},
1511     title        = { Climatology of the
1512    Simulated Great Plains Low-Level Jet and Its contribution to the
1513    Continental Moisture Budget of the United States. },
1514     journal      = jclim,
1515     volume       = {8},
1516     pages        = {784-806}
1517    }
1518    
1519    @Article{kondo:75,
1520     author       = {J. Kondo},
1521     year         = {1975},
1522     title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
1523     journal      = blm,
1524     volume       = {9},
1525     pages        = {91-112}
1526    }
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1529     author       = { Randal D. Koster and Max J. Suarez},
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1531     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1532     institution  = {National Aeronautics and Space Administration},
1533     type         = {NASA Technical Memorandum},
1534     number       = {104538},
1535     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1536     note         = {http://www.gmao.nasa.gov/},
1537    }
1538    
1539    @Article{ks:92,
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1541     year         = {1992},
1542     title        = { Modeling the Land Surface Boundary
1543    in Climate Models as a Composite of Independent Vegetation Stands.},
1544     journal      = jgr,
1545     volume       = {97},
1546     pages        = {2697-2715}
1547    }
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1557    }
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1566    }
1567    
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1572    convection for general circulation models.},
1573     journal      = mwr,
1574     volume       = {120},
1575     pages        = {978-1002}
1576    }
1577    
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1581     title        = {Tower Micrometeorology. },
1582     booktitle    = {Workshop on Micrometeorology},
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1585    }
1586    
1587    @Article{reynetal:94,
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1591     journal      = jclim,
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1593     pages        = {929-948}
1594    }
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1598     year         = {1987},
1599     title        = {  A computation of the stratospheric
1600    diabatic circulation using an accurate radiative transfer model},
1601     journal      = jas,
1602     volume       = {44},
1603     pages        = {859-876}
1604    }
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1606    @Article{sudm:88,
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1608     year         = {1988},
1609     title        = {  The roles of dry convection, cloud-radiation feedback processes
1610    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1611     journal      = mwr,
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1613     pages        = {2366-2387}
1614    }
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1616    @techreport{taksz:96,
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1619     title        = {  Dynamical aspects of climate simulations Using the GEOS
1620    General Circulation Model},
1621     institution  = {National Aeronautics and Space Administration},
1622     type         = {NASA Technical Memorandum},
1623     number       = {104606 Volume 10},
1624     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1625     note         = {http://www.gmao.nasa.gov/},
1626    }
1627    
1628    @Article{yagkad:74,
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1630     year         = {1974},
1631     title        = {Heat and mass transfer between a rough wall and
1632    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1633     journal      = jfm,
1634     volume       = {62},
1635     pages        = {601-623}
1636    }
1637    
1638    @Article{yam:77,
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1640     year         = {1977},
1641     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1642    atmospheric boundary layer.},
1643     journal      = {Atmos. Environ.},
1644     volume       = {11},
1645     pages        = {1015-1024}
1646    }
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1648    @Article{zhouetal:95,
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1650     year         = {1995},
1651     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1652     journal      = qjrms,
1653     volume       = {122},
1654     pages        = {903-927}
1655    }
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1660                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1661                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1662     year           = 1999,
1663     title          = {An intercomparison of radiatively driven entrainment and turbulence
1664                      in a smoke cloud, as simulated by different numerical models.},
1665     journal        = qjrms,
1666     volume         = {125},
1667     pages          = {391-423}
1668                      }
1669    
1670    @Article{bm:99,
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1674     journal        = {Climate Dyn.},
1675     volume         = {15},
1676     pages          = {293-318}
1677                      }
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1683                      Implications for the Simulation of the Madden-Julian Oscillation.},
1684     journal        = {Climate Dyn.},
1685     volume         = {17},
1686     pages          = {777-794}
1687                      }
1688    
1689    @Article{kal:89,
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1691                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
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1693     title          = {Rules for Interchange of Physical Parameterizations.},
1694     journal        = bams,
1695     volume         = {70},
1696     pages          = {620-622}
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1698    
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1703     journal        = mwr,
1704     volume         = {126},
1705     pages          = {991-1000}
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1707    
1708    @TechReport{MPI-std-20,
1709      author =       {{Message Passing Interface Forum}},
1710      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1711      institution =  {mpi-forum.org},
1712      year =         {1998},
1713    }
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1715    @Article{cam08,
1716      author =       {Jean-Michel Campin and John Marshall and David
1717                      Ferreira},
1718      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1719                      Coordinate z$^\ast$},
1720      journal =      om,
1721      volume =       24,
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1725      year =         2008
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1731      title =        {Large-Scale Sea Ice Drift and Deformation:
1732                      {C}omparison between Models and Observations in the
1733                      Western {W}eddell {S}ea during 1992},
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1739    }
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1743      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1744                      increases},
1745      booktitle =    {Climate processes and climate sensitivity},
1746      pages =        {238--253},
1747      publisher =    {AGU},
1748      year =         1984,
1749      editor =       {J. E. Hansen and T. Takahashi},
1750      volume =       29,
1751      series =       {Geophysical Monograph},
1752      address =      {Washington, D.C.}
1753    }
1754    
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1756      author =       {Hibler, III, William D. and Kirk Bryan},
1757      title =        {A Diagnostic Ice-Ocean Model},
1758      journal =      jpo,
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1760      volume =       17,
1761      number =       7,
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1763    }
1764    
1765    @InCollection{hibler95,
1766      author =       {Hibler, III, William D. and Chi F. Ip},
1767      title =        {The effect of sea ice rheology on {A}rcitc buoy
1768                      drift},
1769      booktitle =    {Ice Mechanics},
1770      pages =        {255--264},
1771      publisher =    {Am. Soc. of Mech. Eng.},
1772      year =         1995,
1773      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1774      volume =       204,
1775      series =       {AMD},
1776      address =      {New York}
1777    }
1778    
1779    @Article{hibler97,
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1781      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
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1791      title =        {Method of Lines and Direct Discretization: a
1792                      Comparison for Linear Advection},
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1795      volume =       13,
1796      number =       6,
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1798      doi =          {10.1016/0168-9274(94)90009-4}
1799    }
1800    
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1803      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1804                      Thickness in Subarctic Basins},
1805      journal =      {Nordic Hydrology},
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1807      volume =       14,
1808      pages =        {59--70}
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1813      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1814                      Variation for Future Studies of Climate Sensitivity},
1815      journal =      dao,
1816      year =         1979,
1817      volume =       3,
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1819    }
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1823                      J.-M. Campin and B. Cheng and B. Ciotti and
1824                      I. Fukumori and A. Koehl and P. Heimbach and
1825                      C. Henze and T. Lee and D. Stammer and J. Taft and
1826                      J. Zhang},
1827      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1828                      Climate Research},
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1832      number =       9,
1833      pages =        {89, 95--96}
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1836    @Article{parkinson79,
1837      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1838      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1839      journal =      jgr,
1840      year =         1979,
1841      month =        jan,
1842      volume =       84,
1843      number =       {C1},
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1845      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1846      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1847                      System}
1848    }
1849    
1850    @Article{semtner84,
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1852      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1853                      Ice in Studies of Climatic Change},
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1856      volume =       6,
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1861    @Article{zhang97,
1862      author =       {Jinlun Zhang and Hibler, III, William D.},
1863      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
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1866      volume =       102,
1867      number =       {C4},
1868      pages =        {8691--8702}
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1870    
1871    @Article{zhang03,
1872      author =       {Jinlun Zhang and Drew A. Rothrock},
1873      title =        {Modeling Global Sea Ice with a Thickness and
1874                      Enthalpy Distribution Model in Generalized
1875                      Curvilinear Coordinates},
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1877      year =         2003,
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1883    @Article{beckmann99,
1884      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1885                      Timmermann},
1886      title =        {A Numerical Model of the {W}eddell {S}ea:
1887                      Large-Scale Circulation and Water Mass Distribution},
1888      journal =      jgr,
1889      year =         1999,
1890      volume =       104,
1891      number =       {C10},
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1895    @Article{grosfeld97,
1896      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1897                      Determann},
1898      title =        {Thermohaline Circulation and Interaction between Ice
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1907    @Article{hellmer89,
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1909      title =        {A Two-Dimensional Model of the Thermohaline
1910                      Circulation Under an Ice Shelf},
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1914      pages =        {325--336}
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1916    
1917    @Article{holland99,
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1919      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
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1921      journal =      jpo,
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1923      volume =       29,
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1928    @Article{jenkins01,
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1930                      M. Holland},
1931      title =        {The Role of Meltwater Advection in the Formulation
1932                      of Conservative Boundary Conditions at an Ice-Ocean
1933                      Interface},
1934      journal =      jpo,
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1939    @Article{losch08,
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1941      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
1942                      General Circulation Model},
1943      journal =      jgr,
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1957     year           = 2002,
1958     title          = {Evaluation of ocean model ventilation with CFC-11:
1959                       comparison of 13 global ocean models},
1960     journal        = om,
1961     volume         = {4},          number= {},             month   = {},
1962     pages          = {89-120}
1963                    }
1964    
1965    @Article{marsh06,
1966     author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
1967     year           = 2006,
1968     title          = {Estimates and Implications of Surface Eddy Diffusivity
1969                       in the Southern Ocean Derived from Tracer Transport},
1970     journal        = jpo,
1971     volume         = {36},          number= {},             month   = {},
1972     pages          = {1806-1821}
1973                    }
1974    
1975    @InProceedings{hoe-hill:99,
1976      author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
1977      title =        {A Personal Supercomputer for Climate Research},
1978      booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
1979      year =         1999,
1980      pages = {10.1109/SC.1999},
1981      publisher =    {IEEE},
1982    }
1983    
1984    @Article{stevens:90,
1985      author =       {Stevens, D. P.},
1986      title =        {On Open Boundary Conditions for Three Dimensional
1987                      Primitive Equation Ocean Circulation Models},
1988      journal =      {Geophys. Astrophys. Fl. Dyn.},
1989      year =         1990,
1990      volume =       51,
1991      pages =        {103--133}}
1992    

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