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revision 1.20 by edhill, Mon Aug 1 23:46:25 2005 UTC revision 1.31 by jmc, Fri Nov 17 01:33:05 2006 UTC
# Line 5  Line 5 
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 69  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{dutk-etal:06,
135      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
136      title = {Controls on ocean productivity and air-sea carbon flux:
137               An adjoint model sensitivity study},
138      journal = grl,
139      year = {2006},
140      volume = {33},
141      pages  = {L02603},
142      doi    = {10.1029/2005GL024987},
143    }
144    
145  @Article{err:97,  @Article{err:97,
146   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 356  Line 381 
381   pages          = {658-669}   pages          = {658-669}
382                    }                    }
383    
384    @Article{jam-oze:86,
385     author         = {B.M. Jamart and J. Ozer},
386     year           = {1986},
387     title          = {Numerical boundary layers and spurious residual flows},
388     journal        = jgr,
389     volume         = {91},
390     pages          = {10,621-10,631}
391                      }
392    
393  @book{kas-eta:00,  @book{kas-eta:00,
394   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
395                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 452  Line 486 
486   pages          = {38 pp.},   pages          = {38 pp.},
487   address        = {Delft (NL)},   address        = {Delft (NL)},
488                    }                    }
489    
490    @ARTICLE{losc-heim:06,
491      author = {M. Losch and P. Heimbach},
492      title = {Adjoint sensitivity of an ocean general circulation model
493               to bottom topography},
494      journal = jpo,
495      year = {2006},
496      volume = {{in press}},
497      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
498    }
499    
500    
501  @Article{maro-wun:93,  @Article{maro-wun:93,
502   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 506  Line 551 
551   journal        = jms,   journal        = jms,
552   volume         = {18},   volume         = {18},
553   pages          = {115--134},   pages          = {115--134},
554     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
555     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
556                    }                    }
557    
558  @Article{mcw:96,  @Article{mcw:96,
# Line 581  Line 628 
628   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
629   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
630   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
631     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
632                    }                    }
633    
634  @techreport{sta-eta:97,  @techreport{sta-eta:97,
# Line 599  Line 647 
647   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
648                    }                    }
649    
650  @Article{sta-eta:01,  @ARTICLE{stam-eta:01,
651   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
652                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
653                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
654   year           = 2001,    year = {2002a},
655   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
656                    estimated from ocean observations and a general    pages = {3118},
657                    circulation model},    doi   = {10.1029/2001JC000888},
658   journal        = jgr,  }
659   note           = {in press},  
                   }  
660    
661  @Article{Stommel66,  @Article{Stommel66,
662   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 818 
818    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
819    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
820                   modeling},                   modeling},
821    journal =      {JGR},    journal =      jgr,
822    year =         1997,    year =         1997,
823    volume =       102,    volume =       102,
824    number =       {C3},    number =       {C3},
825    pages =        {5733-5752}    pages =        {5733-5752},
826      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
827  }  }
828    
829  @Article{marshall:97b,  @Article{marshall:97b,
830    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
831    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
832                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
833    journal =      {JGR},    journal =      jgr,
834    year =         1997,    year =         1997,
835    volume =       102,    volume =       102,
836    number =       {C3},    number =       {C3},
837    pages =        {5753-5766}    pages =        {5753-5766},
838      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
839  }  }
840    
841  @Article{adcroft:97,  @Article{adcroft:97,
842    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
843    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
844                    coordinate ocean model},                    coordinate ocean model},
845    journal =      {MWR},    journal =      mwr,
846    year =         1997,    year =         1997,
847    volume =       125,    volume =       125,
848    pages =        {2293-2315}    pages =        {2293-2315},
849      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
850      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
851  }  }
852    
853  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 806  Line 857 
857    journal =      om,    journal =      om,
858    year =         2004,    year =         2004,
859    volume =       7,    volume =       7,
860    pages =        {269-284}    pages =        {269-284},
861      doi   =        {10.1016/j.ocemod.2003.09.003},
862  }  }
863    
864  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 816  Line 868 
868    journal =      mwr,    journal =      mwr,
869    year =         2004,    year =         2004,
870    volume =       132,    volume =       132,
871    pages =        {2845-2863}    pages =        {2845-2863},
872      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
873      doi     =      {10.1175/MWR2823.1},
874  }  }
875    
876  @Article{marshall:04,  @Article{marshall:04,
# Line 825  Line 879 
879    journal =      mwr,    journal =      mwr,
880    year =         2004,    year =         2004,
881    volume =       132,    volume =       132,
882    pages =        {2882-2894}    pages =        {2882-2894},
883      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
884      doi    =       {10.1175/MWR2835.1},
885  }  }
886    
887  @Article{visbeck:97,  @Article{visbeck:97,
888    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
889    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
890                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
891    journal =      {JPO},    journal =      jpo,
892    year =         1997,    year =         1997,
893    volume =       27,    volume =       27,
894    number =       3,    number =       3,
# Line 852  Line 908 
908    pages =        {1-51}    pages =        {1-51}
909  }  }
910    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
911  @Article{mjn:99,  @Article{mjn:99,
912    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
913    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 885  Line 932 
932    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
933    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
934                    at both high and low resolutions},                    at both high and low resolutions},
935    journal =      {MWR},    journal =      mwr,
936    year =         1999,    year =         1999,
937    volume =       127,    volume =       127,
938    pages =        {1928-1936}    pages =        {1928-1936},
939      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
940      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
941  }  }
942    
943  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 903  Line 952 
952  @Article{wardle:00,  @Article{wardle:00,
953    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
954    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
955    journal =      {JPO},    journal =      jpo,
956    year =         2000,    year =         2000,
957    volume =       30,    volume =       30,
958    number =       10,    number =       10,
# Line 920  Line 969 
969  }  }
970    
971  @Article{adcroft:02,  @Article{adcroft:02,
972    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
973    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
974    journal =      om,    journal =      om,
975    year =         2002,    year =         2002,
# Line 938  Line 987 
987    volume =       17    volume =       17
988  }  }
989    
990    @Article{miller_white:84,
991      author =       {Miller, M. J. and White, A. A.},
992      title =        {On the non-hydrostatic equations in pressure
993                      and sigma coordiantes},
994      journal =      qjrms,
995      year =         1984,
996      volume =       110,
997      pages =        {515-533}
998    }
999    
1000    @Article{white:89,
1001      author =       {White, A. A.},
1002      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1003      journal =      qjrms,
1004      year =         1989,
1005      volume =       115,
1006      pages =        {1243-1251}
1007    }
1008    
1009  @Article{adcroft:98,  @Article{adcroft:98,
1010    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1011    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 961  Line 1029 
1029    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1030    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1031                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1032    journal =      {MWR},    journal =      mwr,
1033    year =         2000,    year =         2000,
1034    volume =       128,    volume =       128,
1035    number =       8,    number =       8,
# Line 972  Line 1040 
1040    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1041    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1042                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1043    journal =      {JCP},    journal =      jcp,
1044    year =         1993,    year =         1993,
1045    volume =       105,    volume =       105,
1046    number =       2,    number =       2,
# Line 991  Line 1059 
1059  @Article{dm:95,  @Article{dm:95,
1060    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1061    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1062    journal =      {JC},    journal =      jclim,
1063    year =         1995,    year =         1995,
1064    volume =       8,    volume =       8,
1065    number =       12,    number =       12,
# Line 1001  Line 1069 
1069  @Article{ldd:97,  @Article{ldd:97,
1070    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1071    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1072    journal =      {JPO},    journal =      jpo,
1073    year =         1997,    year =         1997,
1074    volume =       27,    volume =       27,
1075    number =       11,    number =       11,
# Line 1012  Line 1080 
1080    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1081    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1082                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1083    journal =      {JPO},    journal =      jpo,
1084    year =         1999,    year =         1999,
1085    volume =       29,    volume =       29,
1086    number =       8,    number =       8,
# Line 1043  Line 1111 
1111  }  }
1112    
1113  @Article{molteni:03,  @Article{molteni:03,
1114    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1115    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1116                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1117                    multidecadal experiments},                    multidecadal experiments},
1118    journal =      climd,    journal =      climd,
1119    year =         2003,    year =         2003,
# Line 1054  Line 1122 
1122  }  }
1123    
1124  @Article{jiang99,  @Article{jiang99,
1125    author =       {Shi Jiang and Peter H. Stone and Paola    author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
                   Malanotte-Rizzoli},  
1126    title =        {An Assessment of the {G}eophysical {F}luid    title =        {An Assessment of the {G}eophysical {F}luid
1127                    {D}ynamics {L}aboratory Ocean Model with Coarse                    {D}ynamics {L}aboratory Ocean Model with Coarse
1128                    Resolution: Annual-Mean Climatology},                    Resolution: Annual-Mean Climatology},
# Line 1219  Line 1286 
1286    title =        {Mechanisms of air-sea CO$_2$ flux variability in the    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1287                    Equatorial Pacific and the North Atlantic},                    Equatorial Pacific and the North Atlantic},
1288    journal =      {Global Biogeochemical Cycles},    journal =      {Global Biogeochemical Cycles},
1289    year =         {},    year =         {2004},
1290    OPTkey =       {},    OPTkey =       {},
1291    volume =       {18},    volume =       {18},
1292    number =       {doi:10.1029/2003GB002179},    number =       {doi:10.1029/2003GB002179},
# Line 1250  Line 1317 
1317    OPTmonth =     {},    OPTmonth =     {},
1318  }  }
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1325     editor       = {Pfafflin and Zeigler},
1326     publisher    = {Gordon and Breach, Scientific Publishers}
1327    }
1328    
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1335     pages        = {762-772}
1336    }
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1341     title        = {Parameterizations for the absorption of solar radiation
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1343     journal      = jclim,
1344     volume       = {3},
1345     pages        = {209-217}
1346    }
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1350     year         = {1994},
1351     title        = {An efficient thermal infrared radiation parameterization
1352    for use in general circulation models},
1353     institution  = {National Aeronautics and Space Administration},
1354     type         = {NASA Technical Memorandum},
1355     number       = {104606-Vol 3},
1356     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1357     note         = {http://www.gmao.nasa.gov/}
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1401     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
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1405     publisher    = {American Meteorological Society}
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1411     title        = { Climatology of the
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1414     journal      = jclim,
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1416     pages        = {784-806}
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1426    }
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1432     institution  = {National Aeronautics and Space Administration},
1433     type         = {NASA Technical Memorandum},
1434     number       = {104538},
1435     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1436     note         = {http://www.gmao.nasa.gov/},
1437    }
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1441     year         = {1992},
1442     title        = { Modeling the Land Surface Boundary
1443    in Climate Models as a Composite of Independent Vegetation Stands.},
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1445     volume       = {97},
1446     pages        = {2697-2715}
1447    }
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1453    in the Earth's atmosphere.  },
1454     journal      = jas,
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1456     pages        = {118-133}
1457    }
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1466    }
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1472    convection for general circulation models.},
1473     journal      = mwr,
1474     volume       = {120},
1475     pages        = {978-1002}
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1500    diabatic circulation using an accurate radiative transfer model},
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1521     institution  = {National Aeronautics and Space Administration},
1522     type         = {NASA Technical Memorandum},
1523     number       = {104606 Volume 10},
1524     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1525     note         = {http://www.gmao.nasa.gov/},
1526    }
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1554     pages        = {903-927}
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1565     journal        = qjrms,
1566     volume         = {125},
1567     pages          = {391-423}
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1584     journal        = {Climate Dyn.},
1585     volume         = {17},
1586     pages          = {777-794}
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1605     pages          = {991-1000}
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1607    @TechReport{MPI-std-20,
1608      author =       {{Message Passing Interface Forum}}},
1609      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1610      institution =  {mpi-forum.org},
1611      year =         {1998},
1612    }
1613    
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