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revision 1.10 by cnh, Thu Feb 28 19:32:19 2002 UTC revision 1.31 by jmc, Fri Nov 17 01:33:05 2006 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
15  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
16    @string{om      = {Ocean Modelling}}
17  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
18  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
19  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 67  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 114  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{dutk-etal:06,
135      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
136      title = {Controls on ocean productivity and air-sea carbon flux:
137               An adjoint model sensitivity study},
138      journal = grl,
139      year = {2006},
140      volume = {33},
141      pages  = {L02603},
142      doi    = {10.1029/2005GL024987},
143    }
144    
145  @Article{err:97,  @Article{err:97,
146   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 250  Line 277 
277   pages          = {401 pp.},   pages          = {401 pp.},
278                    }                    }
279                                                                        
280    @incollection{gri:89,
281     author         = {A. Griewank},
282     year           = 1989,
283     title          = {On automatic differentiation},
284     booktitle      = {Mathematical Programming: Recent Developments and
285                      Applications},
286     pages          = {83--108},
287     editor         = {M. Iri and K. Tanabe},
288     publisher      = {Kluwer},
289     address        = {Dordrecht, NL},
290                      }
291    
292    @Article{gri:92,
293      author =       {A.~Griewank},
294      title =        {Achieving logarithmic growth of temporal and spatial
295      complexity in reverse {A}utomatic {D}ifferentiation},
296      journal       = {Optimization Methods and Software},
297      year          = {1992},
298      volume        = {1},
299      pages         = {35--54}
300    }
301    
302  @book{gri:00,  @book{gri:00,
303   author         = {A. Griewank},   author         = {A. Griewank},
304   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 282  Line 331 
331    pages =        {241--248}    pages =        {241--248}
332  }  }
333    
334    @Article{held-suar:94,
335     author         = {I.M. Held and M.J. Suarez},
336     year           = {1994},
337     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
338     journal        = {Bulletin of the American Meteorological Society},
339     volume         = {75(10)},
340     pages          = {1825-1830}
341    }
342    
343  @Article{hil-eta:01,  @Article{hil-eta:01,
344   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
345                    J. Marshall},                    J. Marshall},
# Line 292  Line 350 
350   note           = {submitted},   note           = {submitted},
351                    }                    }
352    
353    @ARTICLE{hib80,
354      AUTHOR      = "W. D. {Hibler, III}",
355      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
356      JOURNAL     = mwr,
357      YEAR        = 1980,
358      VOLUME      = 1,
359      PAGES       = "1943-1973"
360    }
361    
362  @Article{Holland75,  @Article{Holland75,
363   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
364   year           = {1975a},   year           = {1975a},
# Line 314  Line 381 
381   pages          = {658-669}   pages          = {658-669}
382                    }                    }
383    
384    @Article{jam-oze:86,
385     author         = {B.M. Jamart and J. Ozer},
386     year           = {1986},
387     title          = {Numerical boundary layers and spurious residual flows},
388     journal        = jgr,
389     volume         = {91},
390     pages          = {10,621-10,631}
391                      }
392    
393  @book{kas-eta:00,  @book{kas-eta:00,
394   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
395                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 410  Line 486 
486   pages          = {38 pp.},   pages          = {38 pp.},
487   address        = {Delft (NL)},   address        = {Delft (NL)},
488                    }                    }
489    
490    @ARTICLE{losc-heim:06,
491      author = {M. Losch and P. Heimbach},
492      title = {Adjoint sensitivity of an ocean general circulation model
493               to bottom topography},
494      journal = jpo,
495      year = {2006},
496      volume = {{in press}},
497      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
498    }
499    
500    
501  @Article{maro-wun:93,  @Article{maro-wun:93,
502   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 464  Line 551 
551   journal        = jms,   journal        = jms,
552   volume         = {18},   volume         = {18},
553   pages          = {115--134},   pages          = {115--134},
554     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
555     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
556                    }                    }
557    
558  @Article{mcw:96,  @Article{mcw:96,
# Line 474  Line 563 
563   volume         = {28},   volume         = {28},
564   pages          = {215--248},   pages          = {215--248},
565                    }                    }
566    
567    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
568    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
569    %% (Available from Unidata or in PostScript form by anonymous FTP from
570    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
571    %%   a hypertext version of the User's Guide available at
572    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
573    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
574    %%   also available.
575    
576    @TechReport{rew:97,
577      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
578      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
579                      An Interface for Data Access, Version 3},
580      institution =  {Unidata Program Center},
581      type =         {Report},
582      address =      {Boulder, Colorado},
583      year =         1997,
584      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
585    }
586    
587    
588  @Article{res-eta:98,  @Article{res-eta:98,
589   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
590   year           = 1998,   year           = 1998,
# Line 518  Line 628 
628   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
629   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
630   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
631     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
632                    }                    }
633    
634  @techreport{sta-eta:97,  @techreport{sta-eta:97,
# Line 536  Line 647 
647   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
648                    }                    }
649    
650  @Article{sta-eta:01,  @ARTICLE{stam-eta:01,
651   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
652                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
653                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
654   year           = 2001,    year = {2002a},
655   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
656                    estimated from ocean observations and a general    pages = {3118},
657                    circulation model},    doi   = {10.1029/2001JC000888},
658   journal        = jgr,  }
659   note           = {in press},  
                   }  
660    
661  @Article{Stommel66,  @Article{Stommel66,
662   author         = {H. Stommel},   author         = {H. Stommel},
# Line 708  Line 818 
818    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
819    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
820                   modeling},                   modeling},
821    journal =      {JGR},    journal =      jgr,
822    year =         1997,    year =         1997,
823    volume =       102,    volume =       102,
824    number =       {C3},    number =       {C3},
825    pages =        {5733-5752}    pages =        {5733-5752},
826      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
827  }  }
828    
829  @Article{marshall:97b,  @Article{marshall:97b,
830    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
831    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
832                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
833    journal =      {JGR},    journal =      jgr,
834    year =         1997,    year =         1997,
835    volume =       102,    volume =       102,
836    number =       {C3},    number =       {C3},
837    pages =        {5753-5766}    pages =        {5753-5766},
838      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
839  }  }
840    
841  @Article{adcroft:97,  @Article{adcroft:97,
842    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
843    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
844                    coordinate ocean model},                    coordinate ocean model},
845    journal =      {MWR},    journal =      mwr,
846    year =         1997,    year =         1997,
847    volume =       125,    volume =       125,
848    pages =        {2293-2315}    pages =        {2293-2315},
849      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
850      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
851    }
852    
853    @Article{adcroft:04a,
854      author =       {Adcroft, A. and J.-M. Campin},
855      title =        {Re-scaled height coordinates for accurate representation
856                      of free-surface flows in ocean circulation models},
857      journal =      om,
858      year =         2004,
859      volume =       7,
860      pages =        {269-284},
861      doi   =        {10.1016/j.ocemod.2003.09.003},
862    }
863    
864    @Article{adcroft:04b,
865      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
866      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
867                      on the Expanded Spherical Cube},
868      journal =      mwr,
869      year =         2004,
870      volume =       132,
871      pages =        {2845-2863},
872      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
873      doi     =      {10.1175/MWR2823.1},
874    }
875    
876    @Article{marshall:04,
877      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
878      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
879      journal =      mwr,
880      year =         2004,
881      volume =       132,
882      pages =        {2882-2894},
883      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
884      doi    =       {10.1175/MWR2835.1},
885  }  }
886    
887  @Article{visbeck:97,  @Article{visbeck:97,
888    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
889    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
890                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
891    journal =      {JPO},    journal =      jpo,
892    year =         1997,    year =         1997,
893    volume =       27,    volume =       27,
894    number =       3,    number =       3,
# Line 760  Line 908 
908    pages =        {1-51}    pages =        {1-51}
909  }  }
910    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
911  @Article{mjn:99,  @Article{mjn:99,
912    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
913    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 793  Line 932 
932    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
933    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
934                    at both high and low resolutions},                    at both high and low resolutions},
935    journal =      {MWR},    journal =      mwr,
936    year =         1999,    year =         1999,
937    volume =       127,    volume =       127,
938    pages =        {1928-1936}    pages =        {1928-1936},
939      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
940      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
941  }  }
942    
943  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 811  Line 952 
952  @Article{wardle:00,  @Article{wardle:00,
953    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
954    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
955    journal =      {JPO},    journal =      jpo,
956    year =         2000,    year =         2000,
957    volume =       30,    volume =       30,
958    number =       10,    number =       10,
# Line 822  Line 963 
963    author =       {Adcroft, A. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
964    title =        {Comparison of finite volume schemes and direct-space-time    title =        {Comparison of finite volume schemes and direct-space-time
965                    methods for ocean circulation models},                    methods for ocean circulation models},
966    journal =      {OM},    journal =      om,
967    year =         2002,    year =         2002,
968    note =         {in preparation}    note =         {in preparation}
969  }  }
970    
971  @Article{adcroft:02,  @Article{adcroft:02,
972    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
973    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
974    journal =      {OM},    journal =      om,
975    year =         2002,    year =         2002,
976    note =         {in preparation}    note =         {in preparation}
977  }  }
# Line 846  Line 987 
987    volume =       17    volume =       17
988  }  }
989    
990    @Article{miller_white:84,
991      author =       {Miller, M. J. and White, A. A.},
992      title =        {On the non-hydrostatic equations in pressure
993                      and sigma coordiantes},
994      journal =      qjrms,
995      year =         1984,
996      volume =       110,
997      pages =        {515-533}
998    }
999    
1000    @Article{white:89,
1001      author =       {White, A. A.},
1002      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1003      journal =      qjrms,
1004      year =         1989,
1005      volume =       115,
1006      pages =        {1243-1251}
1007    }
1008    
1009  @Article{adcroft:98,  @Article{adcroft:98,
1010    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1011    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 869  Line 1029 
1029    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1030    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1031                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1032    journal =      {MWR},    journal =      mwr,
1033    year =         2000,    year =         2000,
1034    volume =       128,    volume =       128,
1035    number =       8,    number =       8,
# Line 880  Line 1040 
1040    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1041    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1042                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1043    journal =      {JCP},    journal =      jcp,
1044    year =         1993,    year =         1993,
1045    volume =       105,    volume =       105,
1046    number =       2,    number =       2,
# Line 888  Line 1048 
1048  }  }
1049    
1050  @Article{campin:02,  @Article{campin:02,
1051    author =       {Campin et al.},    author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1052    title =        {Conservation of properties in a free-surface model},    title =        {Conservation of properties in a free-surface model},
1053    journal =      {OM},    journal =      om,
1054    year =         2002,    year =         2004,
1055    note =         {in preparation}    volume =       6,
1056      pages =        {221-244}
1057  }  }
1058    
1059  @Article{dm:95,  @Article{dm:95,
1060    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1061    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1062    journal =      {JC},    journal =      jclim,
1063    year =         1995,    year =         1995,
1064    volume =       8,    volume =       8,
1065    number =       12,    number =       12,
# Line 908  Line 1069 
1069  @Article{ldd:97,  @Article{ldd:97,
1070    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1071    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1072    journal =      {JPO},    journal =      jpo,
1073    year =         1997,    year =         1997,
1074    volume =       27,    volume =       27,
1075    number =       11,    number =       11,
# Line 919  Line 1080 
1080    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1081    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1082                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1083    journal =      {JPO},    journal =      jpo,
1084    year =         1999,    year =         1999,
1085    volume =       29,    volume =       29,
1086    number =       8,    number =       8,
1087    pages =        {1682-1700}    pages =        {1682-1700}
1088  }  }
1089    
1090  @Article{roe:85,  @incollection{roe:85,
1091    author =       {Roe, P.L.},   author         = {P.L. Roe},
1092    title =        {Some contributions to the modeling of discontinuous flows},   year           = 1985,
1093    journal =      {Lect. Notes Appl. Math.},   title          = {Some contributions to the modelling of discontinuous flows},
1094    year =         1985,   booktitle      = {Large-Scale Computations in Fluid Mechanics},
1095    volume =       22,   series         = {Lectures in Applied Mathematics},
1096    pages =        {163-193}   volume         = 22,
1097     pages          = {163-193},
1098     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1099     publisher      = {American Mathematical Society},
1100     address        = {Providence, RI},
1101    }
1102    
1103    @Article{trenberth90,
1104      author =       {K. M. Trenberth and J. Olson and W. G. Large},
1105      title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind
1106                      Stress},
1107      journal =      jpo,
1108      year =         1990,
1109      volume =       20,
1110      pages =        {1742--1760}
1111    }
1112    
1113    @Article{molteni:03,
1114      author =       {F. Molteni},
1115      title =        {Atmospheric simulations using a {GCM} with simplified physical
1116                      parametrization, {I}: Model climatology and variability in
1117                      multidecadal experiments},
1118      journal =      climd,
1119      year =         2003,
1120      volume =       20,
1121      pages =        {175--191}
1122    }
1123    
1124    @Article{jiang99,
1125      author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
1126      title =        {An Assessment of the {G}eophysical {F}luid
1127                      {D}ynamics {L}aboratory Ocean Model with Coarse
1128                      Resolution: Annual-Mean Climatology},
1129      journal =      jgr,
1130      year =         1999,
1131      volume =       104,
1132      number =       {C11},
1133      pages =        {25,623--25,645}
1134    }
1135    
1136    @Article{szoeke02,
1137      author =       {de Szoeke, Roland A. and Roger M. Samelson},
1138      title =        {The Duality between the {B}oussinesq and
1139                      {N}on-{B}oussinesq Hydrostatic Equations of Motion},
1140      journal =      jpo,
1141      year =         2002,
1142      volume =       32,
1143      number =       8,
1144      pages =        {2194--2203}
1145    }
1146    
1147    @Article{jackett95,
1148      author =       {David R. Jackett and Trevor J. McDougall},
1149      title =        {Minimal Adjustment of Hydrographic Profiles to
1150                      Achieve Static Stability},
1151      journal =      jaot,
1152      year =         1995,
1153      volume =       12,
1154      number =       4,
1155      pages =        {381--389}
1156    }
1157    
1158    @Article{mcdougall03,
1159      author =       {Trevor J. McDougall and David R. Jackett and Daniel
1160                      G. Wright and Rainer Feistel},
1161      title =        {Accurate and Computationally Efficient Algorithms
1162                      for Potential Temperature and Density of Seawater},
1163      journal =      jaot,
1164      year =         {2003},
1165      OPTkey =       {},
1166      OPTvolume =    {},
1167      OPTnumber =    {},
1168      OPTpages =     {},
1169      OPTmonth =     {},
1170      OPTnote =      {{\textup{In press}}},
1171      OPTannote =    {}
1172    }
1173    
1174    @TechReport{fofonoff83,
1175      author =       "Fofonoff, P. and Millard, Jr., R.C.",
1176      title =        "Algorithms for Computation of Fundamental Properties
1177                      of Seawater",
1178      institution =  "Unesco",
1179      year =         1983,
1180      type =         "Unesco Technical Papers in Marine Science",
1181      number =       44,
1182      pages =        {53 pp.}
1183    }
1184    
1185    @ARTICLE{zha98a,
1186      AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele
1187                     and D. A. Rothrock",
1188      TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1189      JOURNAL     = jpo,
1190      YEAR        = 1998,
1191      VOLUME      = 28,
1192      PAGES       = "191-217"
1193    }
1194    
1195    @ARTICLE{sem76,
1196      AUTHOR      = "Semtner, Jr., Albert J.",
1197      TITLE       = "A model for the thermodynamic growth of sea ice in
1198                     numerical investigations of climate",
1199      JOURNAL     = jpo,
1200      YEAR        = 1976,
1201      VOLUME      = 6,
1202      PAGES       = "379-389"
1203    }
1204    
1205    @ARTICLE{win00,
1206      AUTHOR      = "M. Winton",
1207      TITLE       = "A reformulated three-layer sea ice model",
1208      JOURNAL     = jaot,
1209      YEAR        = 2000,
1210      VOLUME      = 17,
1211      PAGES       = "525-531"
1212    }
1213    
1214    @ARTICLE{hib79,
1215      AUTHOR      = "W. D. {Hibler, III}",
1216      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1217      JOURNAL     = jpo,
1218      YEAR        = 1979,
1219      VOLUME      = 9,
1220      PAGES       = "815-846"
1221    }
1222    
1223    @ARTICLE{fla92,
1224      AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",
1225      TITLE       = "Modeling pack ice as a cavitating fluid",
1226      JOURNAL     = jpo,
1227      YEAR        = 1992,
1228      VOLUME      = 22,
1229      PAGES       = "626-651"
1230    }
1231    
1232    @ARTICLE{hun97,
1233      AUTHOR      = "E. C. Hunke and J. K. Dukowicz",
1234      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1235      JOURNAL     = jpo,
1236      YEAR        = 1997,
1237      VOLUME      = 27,
1238      PAGES       = "1849-1867"
1239    }
1240    
1241    @ARTICLE{zha00,
1242      AUTHOR      = "Jinlun Zhang and Drew Rothrock",
1243      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1244      JOURNAL     = jgr,
1245      YEAR        = 2000,
1246      VOLUME      = 105,
1247      PAGES       = "3325-3338"
1248    }
1249    
1250    @Article{Shapiro_70,
1251      author =       {Shapiro, R.},
1252      title =        {Smoothing, filtering, and boundary effects},
1253      journal =      {Reviews of Geophysics and Space Physics},
1254      year =         {1970},
1255      volume =       {8},
1256      number =       {2},
1257      pages =        {359--387},
1258    }
1259    
1260    @TechReport{Dutkiewicz_etal_05,
1261      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1262      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1263                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1264                      in Climate Change Studies, Report 122},
1265      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1266      year =         {2005},
1267      OPTnumber =    {122},
1268      address =      {Cambridge, MA},
1269      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1270    }
1271    
1272    @Article{Follows_etal_05,
1273      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1274      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1275                      Biogeochemistry Models},
1276      journal =      {Ocean Modeling},
1277      year =         {{in press}},
1278      OPTkey =       {},
1279      OPTvolume =    {},
1280      OPTnumber =    {},
1281      OPTpages =     {},
1282    }
1283    
1284    @Article{McKinley_etal_04,
1285      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1286      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1287                      Equatorial Pacific and the North Atlantic},
1288      journal =      {Global Biogeochemical Cycles},
1289      year =         {2004},
1290      OPTkey =       {},
1291      volume =       {18},
1292      number =       {doi:10.1029/2003GB002179},
1293      OPTpages =     {},
1294    }
1295    
1296    @TechReport{Trenberth_etal_89,
1297      author =       {K. Trenberth and J. Olson and W. Large},
1298      title =        {A global wind stress climatology based on ECMWF analyses},
1299      institution =  {NCAR},
1300      year =         {1989},
1301      OPTkey =       {},
1302      OPTtype =      {},
1303      number =       {NCAR/TN-338+STR},
1304      address =      {Boulder, CO},
1305      OPTmonth =     {},
1306    }
1307    
1308    @Article{Wanninkhof_92,
1309      author =       {R. Wanninkhof},
1310      title =        {Relationship between wind speed and gas exchange over the ocean},
1311      journal =      jgr,
1312      year =         {1992},
1313      OPTkey =       {},
1314      volume =       {97},
1315      OPTnumber =    {},
1316      pages =        {7373--7382},
1317      OPTmonth =     {},
1318    }
1319    
1320    @incollection{black:77,
1321     author       = {A. K. Blackadar},
1322     year         = {1977},
1323     title        = {High Resolution Models of the Planetary Boundary Layer.},
1324     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1325     editor       = {Pfafflin and Zeigler},
1326     publisher    = {Gordon and Breach, Scientific Publishers}
1327    }
1328    
1329    @Article{chou:92,
1330     author       = {M-D. Chou},
1331     year         = {1992},
1332     title        = {A solar radiation model for use in climate studies.},
1333     journal      = jas,
1334     volume       = {49},
1335     pages        = {762-772}
1336    }
1337    
1338    @Article{chou:90,
1339     author       = {M-D. Chou},
1340     year         = {1990},
1341     title        = {Parameterizations for the absorption of solar radiation
1342                       by O$_2$ and CO$_2$ with applications to climate studies.},
1343     journal      = jclim,
1344     volume       = {3},
1345     pages        = {209-217}
1346    }
1347    
1348    @techreport{chsz:94,
1349     author       = {M.-D. Chou and M.J.Suarez},
1350     year         = {1994},
1351     title        = {An efficient thermal infrared radiation parameterization
1352    for use in general circulation models},
1353     institution  = {National Aeronautics and Space Administration},
1354     type         = {NASA Technical Memorandum},
1355     number       = {104606-Vol 3},
1356     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1357     note         = {http://www.gmao.nasa.gov/}
1358    }
1359    
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1363     title        = {Observational studies in the atmospheric boundary layer.},
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1365     volume       = {96},
1366     pages        = {91-114}
1367    }
1368    
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1375     pages        = {3567-3586}
1376    }
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1381     title        = {A global climatology of albedo, roughness length and stomatal
1382    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1383     journal      = jam,
1384     volume       = {28},
1385     pages        = {833-855}
1386    }
1387    
1388    @Article{helflab:88,
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1390     year         = {1988},
1391     title        = { Design of a non-singular level 2.5 second-order closure
1392    model for the prediction of atmospheric turbulence. },
1393     journal      = jas,
1394     volume       = {45},
1395     pages        = {113-132}
1396    }
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1398    @inproceedings{helfetal:91,
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1400     year         = {1991},
1401     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1402     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1403     year         = 1991,
1404     pages        = {406-425},
1405     publisher    = {American Meteorological Society}
1406    }
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1411     title        = { Climatology of the
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1413    Continental Moisture Budget of the United States. },
1414     journal      = jclim,
1415     volume       = {8},
1416     pages        = {784-806}
1417    }
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1423     journal      = blm,
1424     volume       = {9},
1425     pages        = {91-112}
1426    }
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1429     author       = { Randal D. Koster and Max J. Suarez},
1430     year         = {1991},
1431     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1432     institution  = {National Aeronautics and Space Administration},
1433     type         = {NASA Technical Memorandum},
1434     number       = {104538},
1435     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1436     note         = {http://www.gmao.nasa.gov/},
1437    }
1438    
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1441     year         = {1992},
1442     title        = { Modeling the Land Surface Boundary
1443    in Climate Models as a Composite of Independent Vegetation Stands.},
1444     journal      = jgr,
1445     volume       = {97},
1446     pages        = {2697-2715}
1447    }
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1452     title        = { A parameterization for the absorption of solar radiation
1453    in the Earth's atmosphere.  },
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1456     pages        = {118-133}
1457    }
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1466    }
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1470     year         = {1992},
1471     title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1472    convection for general circulation models.},
1473     journal      = mwr,
1474     volume       = {120},
1475     pages        = {978-1002}
1476    }
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1481     title        = {Tower Micrometeorology. },
1482     booktitle    = {Workshop on Micrometeorology},
1483     editor       = {D. A. Haugen},
1484     publisher    = {American Meteorological Society}
1485    }
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1490     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1491     journal      = jclim,
1492     volume       = {7},
1493     pages        = {929-948}
1494    }
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1498     year         = {1987},
1499     title        = {  A computation of the stratospheric
1500    diabatic circulation using an accurate radiative transfer model},
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1502     volume       = {44},
1503     pages        = {859-876}
1504    }
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1508     year         = {1988},
1509     title        = {  The roles of dry convection, cloud-radiation feedback processes
1510    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1511     journal      = mwr,
1512     volume       = {116},
1513     pages        = {2366-2387}
1514    }
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1518     year         = {1996},
1519     title        = {  Dynamical aspects of climate simulations Using the GEOS
1520    General Circulation Model},
1521     institution  = {National Aeronautics and Space Administration},
1522     type         = {NASA Technical Memorandum},
1523     number       = {104606 Volume 10},
1524     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1525     note         = {http://www.gmao.nasa.gov/},
1526    }
1527    
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1530     year         = {1974},
1531     title        = {Heat and mass transfer between a rough wall and
1532    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1533     journal      = jfm,
1534     volume       = {62},
1535     pages        = {601-623}
1536    }
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1538    @Article{yam:77,
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1541     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1542    atmospheric boundary layer.},
1543     journal      = {Atmos. Environ.},
1544     volume       = {11},
1545     pages        = {1015-1024}
1546    }
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1550     year         = {1995},
1551     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1552     journal      = qjrms,
1553     volume       = {122},
1554     pages        = {903-927}
1555    }
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1557    @Article{breth:99,
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1559                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1560                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1561                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
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1563     title          = {An intercomparison of radiatively driven entrainment and turbulence
1564                      in a smoke cloud, as simulated by different numerical models.},
1565     journal        = qjrms,
1566     volume         = {125},
1567     pages          = {391-423}
1568                      }
1569    
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1574     journal        = {Climate Dyn.},
1575     volume         = {15},
1576     pages          = {293-318}
1577                      }
1578    
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1581     year           = 2001,
1582     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1583                      Implications for the Simulation of the Madden-Julian Oscillation.},
1584     journal        = {Climate Dyn.},
1585     volume         = {17},
1586     pages          = {777-794}
1587                      }
1588    
1589    @Article{kal:89,
1590     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1591                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1592     year           = 1989,
1593     title          = {Rules for Interchange of Physical Parameterizations.},
1594     journal        = bams,
1595     volume         = {70},
1596     pages          = {620-622}
1597                      }
1598    
1599    @Article{wo:98,
1600     author         = {D. Williamson and J.G. Olsen},
1601     year           = 1998,
1602     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1603     journal        = mwr,
1604     volume         = {126},
1605     pages          = {991-1000}
1606                      }
1607    @TechReport{MPI-std-20,
1608      author =       {{Message Passing Interface Forum}}},
1609      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1610      institution =  {mpi-forum.org},
1611      year =         {1998},
1612  }  }
1613    
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