/[MITgcm]/manual/manual_references.bib

Diff of /manual/manual_references.bib

Parent Directory | Revision Log | View Revision Graph Revision Graph | View Patch Patch

-revision 1.24 by jmc,
Wed Aug 31 18:51:42 2005 UTC
+revision 1.56 by gforget,
Wed Sep 21 01:28:29 2016 UTC
 Line 1
+ @string{angl    = {Ann.\ Glaciol.}}
  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
  @string{bams    = {Bull.~Am.~Met.~Soc.}}
  @string{blm     = {Bound.~Layer~Meteorol.}}
  @string{climd   = {Clim.~Dynamics}}
- @string{jgr     = {J.~Geophys.~Res.}}
+ @string{cch     = {Clim.\ Change}}
- @string{ijrs    = {Int.~J.~Remote Sensing}}
+ @string{cup     = {Cambridge University Press}}
+ @string{dao     = {Dyn.~Atmos.~Oceans}}
+ @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
+ @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
+ @string{dsr     = {Deep Sea Res.}}
+ @string{ecmwf   = {ECMWF}}
+ @string{eos     = {Eos~Trans.\ AGU}}
+ @string{esa     = {European Space Agency (ESA)}}
+ @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
+ @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
+ @string{gaos    = {Global Atmos.~Ocean System}}
+ @string{grl     = {Geophys.~Res.~Lett.}}
+ @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
+ @string{ifremer = {IFREMER/CERSAT}}
+ @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
+ @string{jam     = {J.~Appl.~Meteor.}}
+ @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
  @string{jas     = {J.~Atmos.~Sci.}}
- @string{jpo     = {J.~Phys.~Oceanogr.}}
  @string{jclim   = {J.~Clim.}}
- @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
+ @string{jcp     = {J.~Comput.~Phys.}}
  @string{jfm     = {J.~Fluid Mech.}}
- @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
+ @string{jgr     = {J.~Geophys.~Res.}}
+ @string{ijrs    = {Int.~J.~Remote Sensing}}
  @string{jms     = {J.~Mar.~Sys.}}
- @string{om      = {Ocean Modelling}}
+ @string{jpo     = {J.~Phys.~Oceanogr.}}
- @string{gaos    = {Global Atmos.~Ocean System}}
+ @string{mpi     = {MPI f\"ur Meteorologie}}
- @string{grl     = {Geophys.~Res.~Lett.}}
- @string{dsr     = {Deep Sea Res.}}
- @string{dao     = {Dyn.~Atmos.~Oceans}}
  @string{mwr     = {Mon.~Wea.~Rev.}}
+ @string{om      = {Ocean Modelling}}
+ @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
+ @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
  @string{tel     = {Tellus}}
- @string{cup     = {Cambridge University Press}}
- @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
- @string{ifremer = {IFREMER/CERSAT}}
- @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
- @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
- @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
- @string{mpi     = {MPI f\"ur Meteorologie}}
- @string{ecmwf   = {ECMWF}}
- @string{estec   = {European Space Research and Technology Centre
-                         (ESTEC)}}
- @string{esa     = {European Space Agency (ESA)}}
  @Article{bis-eta:92,
   author         = {C.H. Bishof and G.F. Corliss and L. Green and
-Line 41
+Line 47
   volume         = {3},
   pages          = {625--638},
                    }
  @incollection{bis:94,
   author         = {C.H. Bishof},
   year           = 1994,
-Line 54
+Line 60
   publisher      = {Kluwer},
   address        = {Dordrecht, NL},
                    }
  @techreport{bis-eta:94,
   author         = {C. Bishof and A. Carle and P. Khademi and
                    A. Maurer},
-Line 65
+Line 71
                    Computer Science Division},
   type           = {Argonne Preprint},
   number         = {ANL-MCS-P981-1194},
   address        = {ANL; 9700 South Cass Ave.;
                    Argonne (ILL), 90439; USA},
   note           = {http://www.mcs.anl.gov/autodiff/},
                    }
+ @Article{bouillon13,
+   author =       {Sylvain Bouillon and Thierry Fichefet and Vincent
+                   Legat and Gurvan Madec},
+   title =        {The Elastic-Viscous-Plastic Method Revisited},
+   journal =      om,
+   volume =       71,
+   number =       0,
+   pages =        {2--12},
+   year =         2013,
+   note =         {Arctic Ocean},
+   issn =         {1463-5003},
+   doi =          {10.1016/j.ocemod.2013.05.013},
+   url =          {http://dx.doi.org/10.1016/j.ocemod.2013.05.013},
+ }
+ @ARTICLE{bryan:84,
+   author = {Kirk Bryan},
+   title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
+   journal = jpo,
+   year = {1984},
+   volume = {14},
+   number = {4},
+   pages = {666-673},
+ }
+ @ARTICLE{bugi-hill:06,
+   author = {V. Bugnion and C. Hill},
+   title = {Equilibration mechanisms in an adjoint ocean general
+            circulation model},
+   journal = {Ocean Dynamics},
+   year = {2006},
+   volume = {56},
+   number = {1},
+   pages = {51-61},
+   doi   = {10.1007/s10236-005-0052-z},
+ }
  @techreport{bis-roh:97,
   author         = {C. Bishof and L. Roh},
   year           = 1997,
-Line 79
+Line 121
                    Computer Science Division},
   type           = {Argonne Preprint},
   number         = {ANL-MCS-P626-1196},
   address        = {ANL; 9700 South Cass Ave.;
                    Argonne (ILL), 90439; USA},
   note           = {http://www.mcs.anl.gov/autodiff/},
                    }
+ @Article{castro-morales14,
+   author =       {Karel Castro-Morales and Frank Kauker and Martin
+                   Losch and Stefan Hendricks and Kathrin Riemann-Campe
+                   and R{\"u}diger Gerdes},
+   title =        {Sensitivity of Simulated {A}rctic Sea Ice to
+                   Realistic Ice Thickness Distributions and Snow
+                   Parameterizations},
+   journal =      jgr,
+   issn =         {2169-9291},
+   year =         2014,
+   volume =       119,
+   number =       1,
+   pages =        {559--571},
+   url =          {http://dx.doi.org/10.1002/2013JC009342},
+   doi =          {10.1002/2013JC009342},
+ }
  @Article{cou-tal:87,
   author         = {P. Courtier and O. Talagrand},
   year           = 1987,
   title          = {Variational assimilation of meteorological
                    observations with the adjoint vorticity equation.
                    II: Numerical results},
   journal        = qjrms,
   volume         = {113},
   pages          = {1329--1347},
                    }
  @Article{cou-tal:90,
   author         = {P. Courtier and O. Talagrand},
   year           = 1990,
-Line 105
+Line 164
   volume         = {42A},
   pages          = {531--549},
                    }
  @Article{cou-eta:94,
   author         = {P. Courtier and J.-N. Th{\'e}paut and
                    A. Hollingsworth},
-Line 116
+Line 175
   volume         = {120},
   pages          = {1367--1387},
                    }
+ @ARTICLE{durr:91,
+   author = {Dale R. Durran},
+   title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
+            to Leapfrog Time Differencing},
+   journal = mwr,
+   year = {1991},
+   volume = {119},
+   pages  = {702-720},
+ }
+ @ARTICLE{dutk-etal:06,
+   author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
+   title = {Controls on ocean productivity and air-sea carbon flux:
+            An adjoint model sensitivity study},
+   journal = grl,
+   year = {2006},
+   volume = {33},
+   pages  = {L02603},
+   doi    = {10.1029/2005GL024987},
+ }
  @Article{err:97,
   author         = {R.M. Errico},
   year           = 1997,
-Line 125
+Line 206
   volume         = {78},
   pages          = {2577--2591},
                    }
  @Article{far-moo:92,
   author         = {B.F. Farrell and A.M. Moore},
   year           = {1992},
-Line 135
+Line 216
   volume         = {22},
   pages          = {338--349},
                    }
  @Article{far-ioa:96a,
   author         = {B.F. Farrell and P. Ioannou},
   year           = {1996a},
-Line 145
+Line 226
   volume         = {53},
   pages          = {2025--2040},
                    }
  @Article{far-ioa:96b,
   author         = {B.F. Farrell and P. Ioannou},
   year           = {1996b},
-Line 155
+Line 236
   volume         = {53},
   pages          = {2041--2053},
                    }
  @techreport{fau-pap:98,
   author         = {C. Faure and Y. Papegay},
   year           = 1998,
-Line 168
+Line 249
 Sophia Antipolis Cedex; France},
   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
                    }
  @Article{fau:00,
   author         = {C. Faure},
   year           = {2000},
-Line 176
+Line 257
   journal        = {Optimisation Methods and Software},
   note           = {in press},
                    }
+ @Article{fer-eta:05,
+  author         = {D. Ferreira and J. Marshall and P. Heimbach},
+  year           = 2005,
+  title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
+                    using a Residual-Mean Ocean Circulation Model and Its Adjoint},
+  journal        = jpo,
+  volume         = {35},
+  pages          = {1891--1910},
+                   }
+ @Article{for-eta:15,
+  author         = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.},
+  title          = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation},
+  journal        = {Geoscientific Model Development},
+  volume         = {8},
+  year           = {2015},
+  number         = {10},
+  pages          = {3071--3104},
+  url            = {http://www.geosci-model-dev.net/8/3071/2015/},
+  doi            = {10.5194/gmd-8-3071-2015}
+ }
+ @Article{gas-eta:90,
+  author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
+  year           = 1990,
+  title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
+                    Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
+                    Upper Ocean Study Site},
+  journal        = jgr,
+  volume         = {95 (C9)},
+  pages          = {16,179--16,193},
+                   }
  @Article{gen-mcw:90,
-  author         = {P.R. Gent and J.C. McWilliams},
+  author         = {P. R. Gent and J. C. McWilliams},
   year           = 1990,
   title          = {Isopycnal mixing in ocean circulation models},
   journal        = jpo,
   volume         = {20},
   pages          = {150--155},
                    }
  @Article{gen-eta:95,
-  author         = {P.R. Gent and J. Willebrand and T.J. McDougall
+  author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
-                   and J.C. McWilliams},
   year           = 1995,
-  title          = {Parameterizing eddy-induced tracer transports in
+  title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
-                   ocean circulation models},
   journal        = jpo,
   volume         = {25},
   pages          = {463--474},
                    }
  @Article{gie-kam:98,
   author         = {R. Giering and T. Kaminski},
   year           = 1998,
-Line 209
+Line 321
  @techreport{gie:99,
   author         = {R. Giering},
   year           = 1999,
   title          = {Tangent linear and Adjoint Model Compiler.
                    Users manual 1.4 (TAMC Version 5.2)},
   institution    = {Massachusetts Institute of Technology},
   type           = {Report},
-Line 218
+Line 330
 ; USA},
   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
                    }
  @incollection{gie:00,
   author         = {R. Giering},
   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
-Line 242
+Line 354
   volume         = {45},
   pages          = {407--435},
                    }
  @book{gil-eta:81,
   author         = {P.E. Gill and W. Murray and M.H. Wright},
   title          = {Practical optimization},
   year           = 1981,
   publisher      = {Academic Press},
   address        = {London},
   pages          = {401 pp.},
                    }
  @incollection{gri:89,
   author         = {A. Griewank},
   year           = 1989,
-Line 263
+Line 375
   publisher      = {Kluwer},
   address        = {Dordrecht, NL},
                    }
  @Article{gri:92,
    author =       {A.~Griewank},
    title =        {Achieving logarithmic growth of temporal and spatial
-Line 282
+Line 394
   series         = {Frontiers in Applied Mathematics},
   volume         = {19},
   publisher      = {SIAM},
   address        = {Philadelphia},
   pages          = {369 pp.},
                    }
  @Article{hal-eta:82,
   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
   year           = 1982,
-Line 305
+Line 417
    volume =       1,
    pages =        {241--248}
  }
  @Article{held-suar:94,
   author         = {I.M. Held and M.J. Suarez},
   year           = {1994},
-Line 314
+Line 426
   volume         = {75(10)},
   pages          = {1825-1830}
  }
+ @article{heim-eta:11,
+   title         = {Timescales and regions of the sensitivity of {Atlantic} meridional volume and heat transport: Toward observing system design},
+   author        = {Heimbach, Patrick and Wunsch, Carl and Ponte, Rui M and Forget, Gael and Hill, Chris and Utke, Jean},
+   journal       = {Deep Sea Research Part II: Topical Studies in Oceanography},
+   volume        = {58},
+   number        = {17},
+   pages         = {1858--1879},
+   year          = {2011},
+   publisher     = {Elsevier}
+ }
  @Article{hil-eta:01,
   author         = {C. Hill and M. Follows and V. Bugnion and
                    J. Marshall},
   year           = {2002},
   title          = {Spatial and Temporal Impacts of ocean general
                    circulation on carbon sequestration},
   journal        = {Global Biogeochemical Cycles},
   note           = {submitted},
                    }
  @ARTICLE{hib80,
-   AUTHOR      = "W. D. {Hibler, III}",
+   author =       {Hibler, III, William D.},
    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
    JOURNAL     = mwr,
    YEAR        = 1980,
-Line 337
+Line 461
  @Article{Holland75,
   author         = {W.R. Holland and L. B. Lin},
   year           = {1975a},
   title          = {On the origin of mesoscale eddies and their contribution
                     to the general circulation of the ocean. I. A preliminary
                     numerical experiment},
   journal        = jpo,
   volume         = {5},
-Line 348
+Line 472
  @Article{hol-lin:75b,
   author         = {W.R. Holland and L. B. Lin},
   year           = {1975b},
   title          = {On the origin of mesoscale eddies and their contribution
                     to the general circulation of the ocean. II. A parameter
                     study},
   journal        = jpo,
-Line 356
+Line 480
   pages          = {658-669}
                    }
+ @Article{jam-oze:86,
+  author         = {B.M. Jamart and J. Ozer},
+  year           = {1986},
+  title          = {Numerical boundary layers and spurious residual flows},
+  journal        = jgr,
+  volume         = {91},
+  pages          = {10,621-10,631}
+                   }
  @book{kas-eta:00,
   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
                    N. Mahowald and R.G. Prinn and D.E. Hartley},
-Line 371
+Line 504
  @Article{lar-eta:94,
   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
   year           = 1994,
-  title          = {Oceanic vertical mixing: A review and a model
+  title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
-                   with nonlocal boundary layer parameterization},
   journal        = {Rev.~Geophys.},
   volume         = {32},
   pages          = {363--403},
                    }
  @Article{lar-eta:97,
-  author         = {W.G. Large and G. Danabasoglu and S.C. Doney
+  author         = {W. G. Large and G. Danabasoglu and S. C. Doney
-                   and J.C. McWilliams},
+                   and J. C. McWilliams},
   year           = 1997,
   title          = {Sensitivity to surface forcing and boundary layer
-                   mixing in a global ocean model: annual-mean
+                   mixing in a global ocean model: Annual-mean climatology},
-                   climatology},
   journal        = jpo,
   volume         = {27},
+  number         = 11,
   pages          = {2418--2447},
                    }
  @Article{led-tal:86,
   author         = {F.-X. {Le Dimet} and O. Talagrand},
   year           = 1986,
-Line 430
+Line 562
    OPTannote =    {}
  }
  @Article{lew-der:85,
   author         = {J. Lewis and J. Derber},
   year           = {1985},
-Line 440
+Line 572
   volume         = {37A},
   pages          = {309--322},
                    }
  @techreport{lon:88,
   author         = {R.B. Long},
   year           = 1988,
-Line 452
+Line 584
   pages          = {38 pp.},
   address        = {Delft (NL)},
                    }
+ @ARTICLE{losc-heim:06,
+   author =       {Martin Losch and Patrick Heimbach},
+   title =        {Adjoint Sensitivity of an Ocean General Circulation
+                   Model to Bottom Topography},
+   journal =      jpo,
+   year =         2007,
+   volume =       37,
+   doi =          {10.1175/JPO3017.1},
+   number =       2,
+   pages =        {377--393},
+   url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
+ }
  @Article{maro-wun:93,
   author         = {J. Marotzke and C. Wunsch},
   year           = 1993,
-Line 463
+Line 609
   volume         = {98, C11},
   pages          = {20,149--20,167},
                    }
  @Article{maro-eta:99,
   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
                    D. Stammer and C. Hill and T. Lee},
   year           = 1999,
   title          = {Construction of the adjoint MIT ocean general
-Line 475
+Line 621
   volume         = {104, C12},
   pages          = {29,529--29,547},
                    }
  @Article{mars-eta:97a,
   author         = {J. Marshall and C. Hill and L. Perelman and
                    A. Adcroft},
-Line 486
+Line 632
   volume         = {102, C3},
   pages          = {5,733--5,752},
                    }
  @Article{mars-eta:97b,
   author         = {J. Marshall and A. Adcroft and C. Hill and
                    L. Perelman and C. Heisey},
   year           = {1997b},
   title          = {Hydrostatic, quasi-hydrostatic and
-Line 497
+Line 643
   volume         = {102, C3},
   pages          = {5,753--5,766},
                    }
- @Article{mars-sha:98,
+ @Article{mars-eta:98,
   author         = {J. Marshall and H. Jones and C. Hill},
   year           = 1998,
   title          = {Efficient ocean modeling using
-Line 506
+Line 652
   journal        = jms,
   volume         = {18},
   pages          = {115--134},
+  url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
+  doi            = {10.1016/S0924-7963\%2898\%2900008-6},
                    }
- @Article{mcw:96,
+ @Article{mol:09,
-  author         = {J. McWilliams},
+  author         = {Andrea Molod},
-  year           = 1996,
+  year           = 2009,
-  title          = {Modeling the oceanic general circulation},
+  title          = {Running {GCM} physics and dynamics on different grids:
-  journal        = arfm,
+                    algorithm and tests},
-  volume         = {28},
+  journal        = tel,
-  pages          = {215--248},
+  volume         = {61A},
+  pages          = {381--393},
                    }
  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
  %% (Available from Unidata or in PostScript form by anonymous FTP from
  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
  %%   a hypertext version of the User's Guide available at
  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
  %%   also available.
+ @incollection{naum-etal:06,
+         Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
+         Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
+         Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
+         Pages = {~},
+         Publisher = {TU Delft},
+         Title = {Adjoint code by source transformation with OpenAD/F},
+         Year = {2006}}
+ @Article{orl:76,
+  author         = {I. Orlanski},
+  year           = 1976,
+  title          = {A simple boundary condition for unbounded hyperbolic flows},
+  journal        = jcp,
+  volume         = {21},
+  pages          = {251--269},
+                 }
+ @Article{pal-rom:97,
+  author         = {T. Paluszkiewicz and R.D. Romea},
+  year           = 1997,
+  title          = {A one-dimensional model for the parameterization
+                   of deep convection in the ocean},
+  journal        = dao,
+  volume         = {26},
+  pages          = {95--130},
+                   }
  @TechReport{rew:97,
    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
                    An Interface for Data Access, Version 3},
    institution =  {Unidata Program Center},
    type =         {Report},
-Line 547
+Line 724
   volume         = {19},
   pages          = {1586--1605},
                    }
  @Article{ros-eta:93,
   author         = {N. Rostaing and S. Dalmas and A. Galligo},
   year           = 1993,
-Line 556
+Line 733
   volume         = {45A},
   pages          = {558--568},
                    }
  @incollection{she-and:89,
   author         = {J. Sheinbaum and D.L.T. Anderson},
   year           = 1989,
   title          = {Assimilation of XBT data using a variational
                    technique},
   booktitle      = {Oceanic circulation models:
                    Combining data and dynamics},
-Line 572
+Line 749
   address        = {Berlin (Germany)},
                    }
+ @article{utke-etal:08,
+   Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
+                   and M. Strout and P. Heimbach and C. Hill and
+                   D. Ozyurt and C. Wunsch},
+   Date-Modified ={2007-11-19 10:15:08 -0500},
+   Journal =      {{ACM} Transactions on Mathematical Software},
+   Pages =        {~},
+   Title =        {OpenAD/F: A modular open source tool for automatic
+                   differentiation of Fortran codes},
+   Volume =       {34(4)},
+   Year =         2008
+ }
  @Article{DaSilva94,
   author         = {A. da Silva and A. C. Young and S. Levitus},
   year           = 1994,
-Line 581
+Line 771
   publisher      = {U.S. Department of Commerce},
   address        = {Washington, D.C. (USA)},
   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
+  url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
                    }
- @techreport{sta-eta:97,
+ @techreport{stam-etal:97,
   author         = {D. Stammer and C. Wunsch and R. Giering and
                    Q. Zhang and J. Marotzke and J. Marshall and
                    C. Hill},
   year           = 1997,
   title          = {The global ocean circulation estimated from
                    TOPEX/POSEIDON altimetry and a general circulation
                    model},
   institution    = {Center for Global Change Science, Massachusetts
-Line 598
+Line 789
   pages          = {40 pp.},
   address        = {Cambridge (MA), USA},
                    }
- @Article{sta-eta:01,
+ @article{stam-etal:02,
-  author         = {D. Stammer and C. Wunsch and R. Giering and
+   author =       {D. Stammer and C. Wunsch and R. Giering and
                    C. Eckert and P. Heimbach and J. Marotzke and
-                   A. Adcroft and C. Hill and J. Marshall},
+                   A. Adcroft and C.N. Hill and J. Marshall},
-  year           = 2001,
+   title =        {The global ocean circulation and transports during
-  title          = {The global ocean circulation during 1992 -- 1997,
+-- 1997, estimated from ocean observations and
-                   estimated from ocean observations and a general
+                   a general circulation model.},
-                   circulation model},
+   journal =      jgr,
-  journal        = jgr,
+   year =         {2002a},
-  note           = {in press},
+   volume =       {107(C9)},
-                   }
+   pages =        {3118},
+   doi =          {10.1029/2001JC000888},
+ }
  @Article{Stommel66,
   author         = {H. Stommel},
-Line 623
+Line 817
  @Article{tal-cou:87,
   author         = {O. Talagrand and P. Courtier},
   year           = 1987,
   title          = {Variational assimilation of meteorological
                    observations with the adjoint vorticity equation.
                    I: Theory},
   journal        = qjrms,
   volume         = {113},
   pages          = {1311--1328},
                    }
  @Article{tal:97,
   author         = {O. Talagrand},
   year           = 1997,
-Line 639
+Line 833
   volume         = {75},
   pages          = {191--209},
                    }
  @book{tar:87,
   author         = {A. Tarantola},
   title          = {Inverse Problem Theory: Methods for data fitting
                    and model parameter estimation},
   year           = 1987,
   publisher      = {Elsevier},
   address        = {Amsterdam},
   pages          = {629 pp.},
                    }
  @techreport{tha:87,
   author         = {W.C. Thacker},
   year           = 1987,
-Line 661
+Line 855
   pages          = {64 pp.},
   address        = {Geesthacht (D)},
                    }
  @Article{tha-lon:88,
   author         = {W.C. Thacker and R.B. Long},
   year           = 1988,
-Line 670
+Line 864
   volume         = {93, C2},
   pages          = {1,227--1,240},
                    }
  @Article{tha:88,
   author         = {W.C. Thacker},
   year           = 1988,
-Line 680
+Line 874
   volume         = {93},
   pages          = {10,655--10,665},
                    }
  @Article{tha:89,
   author         = {W.C. Thacker},
   year           = 1989,
-Line 690
+Line 884
   volume         = {94, C5},
   pages          = {6,177--6,196},
                    }
  @Article{tha-rag:94,
   author         = {W.C. Thacker and R. Raghunath},
   year           = 1994,
-Line 700
+Line 894
   volume         = {99, C5},
   pages          = {10,131--10,141},
                    }
  @Article{tzi-tha:89,
   author         = {E. Tziperman and W.C. Thacker},
   year           = {1989},
-Line 710
+Line 904
   volume         = {19},
   pages          = {1471--1485},
                    }
  @Article{tzi-eta:92a,
   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
                    S. Hwang},
-Line 721
+Line 915
   volume         = {22},
   pages          = {1434--1457},
                    }
  @Article{tzi-eta:92b,
   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
                    S. Hwang and S.R. Rintoul},
-Line 732
+Line 926
   volume         = {22},
   pages          = {1458--1485},
                    }
  @book{wun:96,
   author         = {C. Wunsch},
   title          = {The ocean circulation inverse problem},
   year           = 1996,
   publisher      = cup,
   address        = {Cambridge (UK)},
   pages          = {442 pp.},
                    }
  @Article{zha-mar:99,
   author         = {K.Q. Zhang and J. Marotzke},
   year           = 1999,
-Line 771
+Line 965
    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
                   modeling},
-   journal =      {JGR},
+   journal =      jgr,
    year =         1997,
    volume =       102,
    number =       {C3},
-   pages =        {5733-5752}
+   pages =        {5733-5752},
+   url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
  }
  @Article{marshall:97b,
    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
    title =        {A finite-volume, incompressible Navier Stokes model for
                    studies of the ocean on parallel computers},
-   journal =      {JGR},
+   journal =      jgr,
    year =         1997,
    volume =       102,
    number =       {C3},
-   pages =        {5753-5766}
+   pages =        {5753-5766},
+   url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
  }
  @Article{adcroft:97,
    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
    title =        {Representation of topography by shaved cells in a height
                    coordinate ocean model},
-   journal =      {MWR},
+   journal =      mwr,
    year =         1997,
    volume =       125,
-   pages =        {2293-2315}
+   pages =        {2293-2315},
+   url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
+   doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
  }
  @Article{adcroft:04a,
-Line 806
+Line 1004
    journal =      om,
    year =         2004,
    volume =       7,
-   pages =        {269-284}
+   pages =        {269-284},
+   doi   =        {10.1016/j.ocemod.2003.09.003},
  }
  @Article{adcroft:04b,
-Line 816
+Line 1015
    journal =      mwr,
    year =         2004,
    volume =       132,
-   pages =        {2845-2863}
+   pages =        {2845-2863},
+   url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
+   doi     =      {10.1175/MWR2823.1},
+ }
+ @inproceedings{adcroft:04c,
+   author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
+                   and P. Heimbach},
+   title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
+   booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
+                  Recent developments in numerical methods for atmosphere and
+                  ocean modelling},
+   year =         2004,
+   pages =        {139-149},
+   url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
+  publisher =     ecmwf
  }
  @Article{marshall:04,
-Line 825
+Line 1039
    journal =      mwr,
    year =         2004,
    volume =       132,
-   pages =        {2882-2894}
+   pages =        {2882-2894},
+   url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
+   doi    =       {10.1175/MWR2835.1},
  }
  @Article{visbeck:97,
-   author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
+   author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
-   title =        {Specification of eddy transfer coefficients in
+   title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
-                   coarse-resolution ocean circulation models},
+   journal =      jpo,
-   journal =      {JPO},
    year =         1997,
    volume =       27,
    number =       3,
-Line 852
+Line 1067
    pages =        {1-51}
  }
- @Article{marshall:98,
-   author =       {J. Marshall and H. Jones and C. Hill},
-   title =        {Efficient ocean modeling using non-hydrostatic algorithms},
-   journal =      {JMR},
-   year =         1998,
-   volume =       18,
-   pages =        {115-134}
- }
  @Article{mjn:99,
    author =       {Marshall, J., Jamous, D and J. Nilsson},
    title =        {Reconciling `thermodynamic' and `dynamic' methods of
-Line 885
+Line 1091
    author =       {Adcroft, A., Hill C. and J. Marshall},
    title =        {A new treatment of the Coriolis terms in C-grid models
                    at both high and low resolutions},
-   journal =      {MWR},
+   journal =      mwr,
    year =         1999,
    volume =       127,
-   pages =        {1928-1936}
+   pages =        {1928-1936},
+   url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
+   doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
  }
  @InProceedings{hill:99,
-Line 903
+Line 1111
  @Article{wardle:00,
    author =       {Wardle R. and Marshall J.},
    title =        {Representation of eddies in primitive equation models by a PV flux},
-   journal =      {JPO},
+   journal =      jpo,
    year =         2000,
    volume =       30,
    number =       10,
-Line 920
+Line 1128
  }
  @Article{adcroft:02,
-   author =       {Adcroft et al.},
+   author =       {Adcroft, A., et~al.},
    title =        {Energy conversion in discrete numerical models},
    journal =      om,
    year =         2002,
-Line 942
+Line 1150
    author =       {Miller, M. J. and White, A. A.},
    title =        {On the non-hydrostatic equations in pressure
                    and sigma coordiantes},
-   journal =      {qjrms},
+   journal =      qjrms,
    year =         1984,
    volume =       110,
    pages =        {515-533}
-Line 951
+Line 1159
  @Article{white:89,
    author =       {White, A. A.},
    title =        {An extended version of a nonhydrostatic, pressure coordiante model},
-   journal =      {qjrms},
+   journal =      qjrms,
    year =         1989,
    volume =       115,
    pages =        {1243-1251}
-Line 978
+Line 1186
  @Article{griffies:00,
    author =       {Griffies, S.,M. and Hallberg, R.,W.},
-   title =        {Biharmonic friction with a Smagorinsky-like viscosity for
+   title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
                    use in large-scale eddy-permitting ocean models},
-   journal =      {MWR},
+   journal =      mwr,
    year =         2000,
    volume =       128,
    number =       8,
-Line 991
+Line 1199
    author =       {Wajsowicz, R.},
    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
-   journal =      {JCP},
+   journal =      jcp,
    year =         1993,
    volume =       105,
    number =       2,
-Line 1007
+Line 1215
    pages =        {221-244}
  }
+ @Article{Cox87,
+   author =       {M. D. Cox},
+   title =        {An isopycnal diffusion in a z-coordinate ocean model},
+   journal =      {Ocean modelling},
+   year =         1987,
+   volume =       74,
+   pages =        {1-5 (Unpublished manuscript)}
+ }
+ @Article{gretal:98,
+   author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
+   title =        {Isoneutral diffusion in a z-coordinate ocean model},
+   journal =      jpo,
+   year =         1998,
+   volume =       28,
+   pages =        {805-830}
+ }
+ @ARTICLE{gr:98,
+   author =       {S. M. Griffies},
+   title =        {The {Gent-McWilliams} Skew Flux},
+   journal =      jpo,
+   year =         1998,
+   volume =       28,
+   pages =        {831-841}
+ }
+ @Article{gkw:91,
+   author =       {R. Gerdes and C. Koberle and J. Willebrand},
+   title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
+   journal =      climd,
+   year =         1991,
+   volume =       5,
+   number =       4,
+   pages =        {211-226},
+   doi   =        {10.1007/BF00210006}
+ }
  @Article{dm:95,
-   author =       {Danabasoglu, G. and McWilliams J.C.},
+   author =       {G. Danabasoglu and J. C. McWilliams},
    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
-   journal =      {JC},
+   journal =      jclim,
    year =         1995,
    volume =       8,
    number =       12,
    pages =        {2967-2987}
  }
- @Article{ldd:97,
+ @article{fuku-etal:07,
-   author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
+   title={A near-uniform basin-wide sea level fluctuation of the Mediterranean Sea},
-   title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
+   author={Fukumori, Ichiro and Menemenlis, Dimitris and Lee, Tong},
-   journal =      {JPO},
+   journal={Journal of physical oceanography},
-   year =         1997,
+   volume={37},
-   volume =       27,
+   number={2},
-   number =       11,
+   pages={338--358},
-   pages =        {2418-2447}
+   year={2007}
+ }
+ @article {fuku-etal:14,
+   title = "A near-uniform fluctuation of ocean bottom pressure and sea level across the deep ocean basins of the Arctic Ocean and the Nordic Seas ",
+   journal = "Progress in Oceanography ",
+   volume = "134",
+   number = "0",
+   pages = "152 - 172",
+   year = "2015",
+   note = "",
+   issn = "0079-6611",
+   doi = "http://dx.doi.org/10.1016/j.pocean.2015.01.013",
+   url = "http://www.sciencedirect.com/science/article/pii/S0079661115000245",
+   author = "Ichiro Fukumori and Ou Wang and William Llovel and Ian Fenty and Gael Forget",
  }
  @Article{gkw:99,
-   author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
+   author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
-   title =        {Mechanisms for spreading of Mediterranean water in
+   title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
-                   coarse-resolution numerical models},
+   journal =      jpo,
-   journal =      {JPO},
    year =         1999,
    volume =       29,
    number =       8,
-Line 1062
+Line 1322
  }
  @Article{molteni:03,
-   author =       {K. M. Trenberth and J. Olson and W. G. Large},
+   author =       {F. Molteni},
-   title =        {Atmospheric simulations using a GCM with simplified physical
+   title =        {Atmospheric simulations using a {GCM} with simplified physical
-                   parametrization, I model climatology and variability in
+                   parametrization, {I}: Model climatology and variability in
                    multidecadal experiments},
    journal =      climd,
    year =         2003,
-Line 1134
+Line 1394
  }
  @ARTICLE{zha98a,
-   AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele
+   AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
                   and D. A. Rothrock",
    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
    JOURNAL     = jpo,
-Line 1162
+Line 1422
    PAGES       = "525-531"
  }
  @ARTICLE{hib79,
-   AUTHOR      = "W. D. {Hibler, III}",
+   author =       {Hibler, III, W. D.},
    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
    JOURNAL     = jpo,
    YEAR        = 1979,
-Line 1172
+Line 1432
  }
  @ARTICLE{fla92,
-   AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",
+   AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
    TITLE       = "Modeling pack ice as a cavitating fluid",
    JOURNAL     = jpo,
    YEAR        = 1992,
-Line 1186
+Line 1446
    JOURNAL     = jpo,
    YEAR        = 1997,
    VOLUME      = 27,
-   PAGES       = "1849-1867"
+   PAGES       = "1849--1867"
+ }
+ @Article{hun01,
+   author =       {Elizabeth C. Hunke},
+   title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
+                   Model: Linearization Issues},
+   journal =      jcp,
+   year =         2001,
+   volume =       170,
+   pages =        {18--38},
+   doi =          {10.1006/jcph.2001.6710}
  }
  @ARTICLE{zha00,
-Line 1195
+Line 1466
    JOURNAL     = jgr,
    YEAR        = 2000,
    VOLUME      = 105,
-   PAGES       = "3325-3338"
+   PAGES       = "3325--3338"
  }
  @Article{Shapiro_70,
-Line 1210
+Line 1481
  @TechReport{Dutkiewicz_etal_05,
    author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
    title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
                    its Coupling to a Two-Dimensional Atmospheric Model: Uses
                    in Climate Change Studies, Report 122},
    institution =  {MIT Joint Program of the Science and Policy of Global Change},
    year =         {2005},
-Line 1234
+Line 1505
  @Article{McKinley_etal_04,
    author =       {G. McKinley and M. J. Follows and J. C. Marshall},
    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
                    Equatorial Pacific and the North Atlantic},
    journal =      {Global Biogeochemical Cycles},
-   year =         {},
+   year =         {2004},
    OPTkey =       {},
    volume =       {18},
    number =       {doi:10.1029/2003GB002179},
-Line 1276
+Line 1547
   editor       = {Pfafflin and Zeigler},
   publisher    = {Gordon and Breach, Scientific Publishers}
  }
  @Article{chou:92,
   author       = {M-D. Chou},
   year         = {1992},
   title        = {A solar radiation model for use in climate studies.},
   journal      = jas,
   volume       = {49},
   pages        = {762-772}
  }
-Line 1301
+Line 1572
   year         = {1994},
   title        = {An efficient thermal infrared radiation parameterization
  for use in general circulation models},
   institution  = {National Aeronautics and Space Administration},
   type         = {NASA Technical Memorandum},
   number       = {104606-Vol 3},
   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
   note         = {http://www.gmao.nasa.gov/}
  }
-Line 1312 
 for use in general circulation models},
+Line 1583 
 for use in general circulation models},
   author       = {R. H. Clarke},
   year         = {1970},
   title        = {Observational studies in the atmospheric boundary layer.},
   journal      = qjrms,
   volume       = {96},
   pages        = {91-114}
  }
-Line 1323 
 for use in general circulation models},
+Line 1594 
 for use in general circulation models},
   title        = {NDVI-derived Land Cover Classification at Global Scales. },
   journal      = {Int'l J. Rem. Sens.} ,
   volume       = {15},
   pages        = {3567-3586}
  }
  @Article{dorsell:89,
   author       = { J. L. Dorman and P. J. Sellers},
   year         = {1989},
   title        = {A global climatology of albedo, roughness length and stomatal
  resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
   journal      = jam,
   volume       = {28},
   pages        = {833-855}
  }
-Line 1341 
 resistance for atmospheric general circu
+Line 1612 
 resistance for atmospheric general circu
   year         = {1988},
   title        = { Design of a non-singular level 2.5 second-order closure
  model for the prediction of atmospheric turbulence. },
   journal      = jas,
   volume       = {45},
   pages        = {113-132}
  }
-Line 1371 
 Continental Moisture Budget of the Unite
+Line 1642 
 Continental Moisture Budget of the Unite
   author       = {J. Kondo},
   year         = {1975},
   title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
   journal      = blm,
   volume       = {9},
   pages        = {91-112}
  }
-Line 1380 
 Continental Moisture Budget of the Unite
+Line 1651 
 Continental Moisture Budget of the Unite
   author       = { Randal D. Koster and Max J. Suarez},
   year         = {1991},
   title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
   institution  = {National Aeronautics and Space Administration},
   type         = {NASA Technical Memorandum},
   number       = {104538},
   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
   note         = {http://www.gmao.nasa.gov/},
  }
-Line 1402 
 in Climate Models as a Composite of Inde
+Line 1673 
 in Climate Models as a Composite of Inde
   year         = {1974},
   title        = { A parameterization for the absorption of solar radiation
  in the Earth's atmosphere.  },
   journal      = jas,
   volume       = {31},
   pages        = {118-133}
  }
-Line 1411 
 in the Earth's atmosphere.  },
+Line 1682 
 in the Earth's atmosphere.  },
   author       = {W. G. Large and S. Pond},
   year         = {1981},
   title        = {Open ocean momentum flux measurements in moderate to strong winds.},
   journal      = jpo,
   volume       = {11},
   pages        = {324-336}
  }
-Line 1421 
 in the Earth's atmosphere.  },
+Line 1692 
 in the Earth's atmosphere.  },
   year         = {1992},
   title        = {  Relaxed Arakawa Schubert: A parameterization of moist
  convection for general circulation models.},
   journal      = mwr,
   volume       = {120},
   pages        = {978-1002}
  }
-Line 1439 
 convection for general circulation model
+Line 1710 
 convection for general circulation model
   author       = {R. W. Reynolds and T. M. Smith},
   year         = {1994},
   title        = {Improved global sea surface temperature analyses using optimum interpolation.},
   journal      = jclim,
   volume       = {7},
   pages        = {929-948}
  }
-Line 1449 
 convection for general circulation model
+Line 1720 
 convection for general circulation model
   year         = {1987},
   title        = {  A computation of the stratospheric
  diabatic circulation using an accurate radiative transfer model},
   journal      = jas,
   volume       = {44},
   pages        = {859-876}
  }
-Line 1459 
 diabatic circulation using an accurate r
+Line 1730 
 diabatic circulation using an accurate r
   year         = {1988},
   title        = {  The roles of dry convection, cloud-radiation feedback processes
  and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
   journal      = mwr,
   volume       = {116},
   pages        = {2366-2387}
  }
-Line 1469 
 and the influence of recent improvements
+Line 1740 
 and the influence of recent improvements
   year         = {1996},
   title        = {  Dynamical aspects of climate simulations Using the GEOS
  General Circulation Model},
   institution  = {National Aeronautics and Space Administration},
   type         = {NASA Technical Memorandum},
   number       = {104606 Volume 10},
   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
   note         = {http://www.gmao.nasa.gov/},
  }
-Line 1481 
 General Circulation Model},
+Line 1752 
 General Circulation Model},
   year         = {1974},
   title        = {Heat and mass transfer between a rough wall and
  turbulent fluid flow at high Reynolds and Peclet numbers.  },
   journal      = jfm,
   volume       = {62},
   pages        = {601-623}
  }
-Line 1491 
 turbulent fluid flow at high Reynolds an
+Line 1762 
 turbulent fluid flow at high Reynolds an
   year         = {1977},
   title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
  atmospheric boundary layer.},
   journal      = {Atmos. Environ.},
   volume       = {11},
   pages        = {1015-1024}
  }
-Line 1500 
 atmospheric boundary layer.},
+Line 1771 
 atmospheric boundary layer.},
   author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
   year         = {1995},
   title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
   journal      = qjrms,
   volume       = {122},
   pages        = {903-927}
  }
  @Article{breth:99,
   author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
                     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
                     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
                     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
   year           = 1999,
   title          = {An intercomparison of radiatively driven entrainment and turbulence
                    in a smoke cloud, as simulated by different numerical models.},
   journal        = qjrms,
   volume         = {125},
   pages          = {391-423}
                    }
  @Article{bm:99,
   author         = {A. C. Bushell and G.M. Martin},
   year           = 1999,
   title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
   journal        = {Climate Dyn.},
   volume         = {15},
   pages          = {293-318}
                    }
  @Article{Inn:01,
   author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
   year           = 2001,
   title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
                    Implications for the Simulation of the Madden-Julian Oscillation.},
   journal        = {Climate Dyn.},
   volume         = {17},
   pages          = {777-794}
                    }
  @Article{kal:89,
   author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
                     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
   year           = 1989,
   title          = {Rules for Interchange of Physical Parameterizations.},
   journal        = bams,
   volume         = {70},
   pages          = {620-622}
                    }
  @Article{wo:98,
   author         = {D. Williamson and J.G. Olsen},
   year           = 1998,
   title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
   journal        = mwr,
   volume         = {126},
   pages          = {991-1000}
                    }
+ @TechReport{MPI-std-20,
+   author =       {{Message Passing Interface Forum}},
+   title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
+   institution =  {mpi-forum.org},
+   year =         {1998},
+ }
+ @Article{cam08,
+   author =       {Jean-Michel Campin and John Marshall and David
+                   Ferreira},
+   title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
+                   Coordinate z$^\ast$},
+   journal =      om,
+   volume =       24,
+   number =       {1--2},
+   pages =        {1--14},
+   doi =          {10.1016/j.ocemod.2008.05.005},
+   year =         2008
+ }
+ @Article{geiger98,
+   author =       {Cathleen A. Geiger and Hibler, III, William D. and
+                   Stephen F. Ackley},
+   title =        {Large-Scale Sea Ice Drift and Deformation:
+                   {C}omparison between Models and Observations in the
+                   Western {W}eddell {S}ea during 1992},
+   journal =      jgr,
+   year =         1998,
+   volume =       103,
+   number =       {C10},
+   pages =        {21893--21913}
+ }
+ @InCollection{hibler84,
+   author =       {Hibler, III, William D.},
+   title =        {The role of sea ice dynamics in modeling CO{$_2$}
+                   increases},
+   booktitle =    {Climate processes and climate sensitivity},
+   pages =        {238--253},
+   publisher =    {AGU},
+   year =         1984,
+   editor =       {J. E. Hansen and T. Takahashi},
+   volume =       29,
+   series =       {Geophysical Monograph},
+   address =      {Washington, D.C.}
+ }
+ @Article{hibler87,
+   author =       {Hibler, III, William D. and Kirk Bryan},
+   title =        {A Diagnostic Ice-Ocean Model},
+   journal =      jpo,
+   year =         1987,
+   volume =       17,
+   number =       7,
+   pages =        {987--1015}
+ }
+ @InCollection{hibler95,
+   author =       {Hibler, III, William D. and Chi F. Ip},
+   title =        {The effect of sea ice rheology on {A}rcitc buoy
+                   drift},
+   booktitle =    {Ice Mechanics},
+   pages =        {255--264},
+   publisher =    {Am. Soc. of Mech. Eng.},
+   year =         1995,
+   editor =       {John P. Dempsey and Y. D. S. Rajapakse},
+   volume =       204,
+   series =       {AMD},
+   address =      {New York}
+ }
+ @Article{hibler97,
+   author =       {Hibler, III, William D. and Erland M. Schulson},
+   title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
+                   Investigations of Climate},
+   journal =      angl,
+   year =         1997,
+   volume =       25,
+   pages =        {26--32}
+ }
+ @Article{hundsdorfer94,
+   author =       {Willem Hundsdorfer and R. A. Trompert},
+   title =        {Method of Lines and Direct Discretization: a
+                   Comparison for Linear Advection},
+   journal =      {Applied Numerical Mathematics},
+   year =         1994,
+   volume =       13,
+   number =       6,
+   pages =        {469--490},
+   doi =          {10.1016/0168-9274(94)90009-4}
+ }
+ @Article{leppaeranta83,
+   author =       {Matti Lepp{\"a}ranta},
+   title =        {A Growth Model for Black Ice, Snow Ican and Snow
+                   Thickness in Subarctic Basins},
+   journal =      {Nordic Hydrology},
+   year =         1983,
+   volume =       14,
+   pages =        {59--70}
+ }
+ @Article{manabe79,
+   author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
+   title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
+                   Variation for Future Studies of Climate Sensitivity},
+   journal =      dao,
+   year =         1979,
+   volume =       3,
+   number =       {393--426}
+ }
+ @Article{menemenlis05,
+   author =       {D. Menemenlis and C. Hill and A. Adcroft and
+                   J.-M. Campin and B. Cheng and B. Ciotti and
+                   I. Fukumori and A. Koehl and P. Heimbach and
+                   C. Henze and T. Lee and D. Stammer and J. Taft and
+                   J. Zhang},
+   title =        {{NASA} Supercomputer Improves Prospects for Ocean
+                   Climate Research},
+   journal =      eos,
+   year =         2005,
+   volume =       86,
+   number =       9,
+   pages =        {89, 95--96}
+ }
+ @Article{parkinson79,
+   author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
+   title =        "{A Large-Scale Numerical Model of Sea Ice}",
+   journal =      jgr,
+   year =         1979,
+   month =        jan,
+   volume =       84,
+   number =       {C1},
+   pages =        {311--337},
+   adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
+   adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
+                   System}
+ }
+ @Article{semtner84,
+   author =       {Semtner, Jr., Albert J.},
+   title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
+                   Ice in Studies of Climatic Change},
+   journal =      cch,
+   year =         1984,
+   volume =       6,
+   number =       1,
+   pages =        {27--37}
+ }
+ @Article{zhang97,
+   author =       {Jinlun Zhang and Hibler, III, William D.},
+   title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
+   journal =      jgr,
+   year =         1997,
+   volume =       102,
+   number =       {C4},
+   pages =        {8691--8702}
+ }
+ @Article{zhang03,
+   author =       {Jinlun Zhang and Drew A. Rothrock},
+   title =        {Modeling Global Sea Ice with a Thickness and
+                   Enthalpy Distribution Model in Generalized
+                   Curvilinear Coordinates},
+   journal =      mwr,
+   year =         2003,
+   volume =       131,
+   number =       5,
+   pages =        {845--861}
+ }
+ @Article{beckmann99,
+   author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
+                   Timmermann},
+   title =        {A Numerical Model of the {W}eddell {S}ea:
+                   Large-Scale Circulation and Water Mass Distribution},
+   journal =      jgr,
+   year =         1999,
+   volume =       104,
+   number =       {C10},
+   pages =        {23,375--23,392}
+ }
+ @Article{grosfeld97,
+   author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
+                   Determann},
+   title =        {Thermohaline Circulation and Interaction between Ice
+                   Shelf Cavities and the Adjacent Open Water},
+   journal =      jgr,
+   year =         1997,
+   volume =       102,
+   number =       {C7},
+   pages =        {15,595--15,610}
+ }
+ @Article{hellmer89,
+   author =       {Hartmut H. Hellmer and Dirk J. Olbers},
+   title =        {A Two-Dimensional Model of the Thermohaline
+                   Circulation Under an Ice Shelf},
+   journal =      {Antarct. Sci.},
+   year =         1989,
+   volume =       1,
+   pages =        {325--336}
+ }
+ @Article{holland99,
+   author =       {David M. Holland and Adrian Jenkins},
+   title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
+                   Base of an Ice Shelf},
+   journal =      jpo,
+   year =         1999,
+   volume =       29,
+   number =       8,
+   pages =        {1787--1800}
+ }
+ @Article{hutchings04,
+   author =       {Jennifer K. Hutchings and Hrvoje Jasak and Seymour
+                   W. Laxon},
+   title =        {A Strength Implicit Correction Scheme for the
+                   Viscous-Plastic Sea Ice Model},
+   journal =      om,
+   year =         2004,
+   volume =       7,
+   number =       {1--2},
+   pages =        {111-133},
+   doi =          {10.1016/S1463-5003(03)00040-4}
+ }
+ @Article{jenkins01,
+   author =       {Adrian Jenkins and Hartmut H. Hellmer and David
+                   M. Holland},
+   title =        {The Role of Meltwater Advection in the Formulation
+                   of Conservative Boundary Conditions at an Ice-Ocean
+                   Interface},
+   journal =      jpo,
+   year =         2001,
+   volume =       31,
+   pages =        {285--296}}
+ @Article{kalnay96,
+   author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
+                   W. Collins and D. Deaven and L. Gandin and
+                   M. Iredell and S. Saha and G. White and J. Woollen
+                   and Y. Zhu and M. Chelliah and W. Ebisuzaki and
+                   W. Higgins and J. Janowiak and K. C. Mo and
+                   C. Ropelewski and J. Wang and A. Leetmaa and
+                   R. Reynolds and R. Jenne and D. Joseph},
+   title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
+   journal =      bams,
+   year =         1996,
+   volume =       77,
+   pages =        {437--471}
+ }
+ @Article{kimmritz15,
+   author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
+   title =        {On the Convergence of the Modified
+                   Elastic-Viscous-Plastic Method of Solving for
+                   Sea-Ice Dynamics},
+   journal =      jcp,
+   year =         2015,
+   volume =       296,
+   pages =        {90--100},
+   doi =          {10.1016/j.jcp.2015.04.051}}
+ @Article{kimmritz16,
+   author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
+   title =        {The Adaptive {EVP} Method for Solving the Sea Ice Momentum Equation},
+   journal =      om,
+   year =         2016,
+   url =          {http://mitgcm.org/~mlosch/adaptiveEVP_accepted.pdf},
+   OPTvolume =    {},
+   OPTnumber =    {},
+   OPTpages =     {},
+   OPTmonth =     {},
+   OPTnote =      {},
+   OPTannote =    {},
+   OPTdoi =       {}}
+ @Article{klymaklegg10,
+   author =       {Klymak, Jody M. and Sonya M. Legg},
+   title =        {A simple mixing scheme for models that resolve
+                   breaking internal waves},
+   journal =      om,
+   year =         2010,
+   volume =       33,
+   pages =        {224--234},
+   doi =          {10.1016/j.ocemod.2010.02.005}
+ }
+ @Article{losch08,
+   author =       {Martin Losch},
+   title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
+                   General Circulation Model},
+   journal =      jgr,
+   year =         2008,
+   volume =       113,
+   number =       {C08043},
+   doi =          {10.1029/2007JC004368}
+ }
+ @Article{losch10:_mitsim,
+   author =       {Losch, Martin and Menemenlis, Dimitris and Campin,
+                   Jean-Michel and Heimbach, Patrick and Hill, Chris},
+   title =        {On the formulation of sea-ice models. {P}art 1:
+                   Effects of different solver implementations and
+                   parameterizations},
+   journal =      om,
+   year =         2010,
+   volume =       33,
+   number =       {1--2},
+   pages =        {129--144},
+   doi =          {10.1016/j.ocemod.2009.12.008}
+ }
+ @Article{losch14:_jfnk,
+   author =       {Martin Losch and Annika Fuchs and
+                   Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
+   title =        {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
+                   for a Coupled Sea Ice-Ocean Model },
+   journal =      jcp,
+   volume =       {257},
+   number =       {A},
+   pages =        {901--910},
+   year =         {2014},
+   doi =          {10.1016/j.jcp.2013.09.026}
+ }
+ @Article{lemieux09,
+   author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay},
+   title =        {Numerical Convergence of Viscous-Plastic Sea Ice
+                   Models},
+   journal =      jgr,
+   year =         2009,
+   volume =       114,
+   number =       {C05009},
+   doi =          {10.1029/2008JC005017}}
+ @Article{lemieux10,
+   author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan
+                   Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen
+                   Thomas and David Huard and Jean-Pierre Auclair},
+   title =        {Improving the Numerical Convergence of
+                   Viscous-Plastic Sea Ice Models with the
+                   {J}acobian-Free {N}ewton-{K}rylov Method},
+   journal =      jcp,
+   year =         2010,
+   volume =       229,
+   pages =        {2840--2852},
+   doi =          {10.1016/j.jcp.2009.12.011c}}
+ @Article{lemieux12,
+   author =       {Jean-Fran{\c{c}}ois Lemieux and Dana Knoll and Bruno
+                   Tremblay and David M. Holland and Martin Losch},
+   title =        {A Comparison of the {J}acobian-free
+                   {N}ewton-{K}rylov Method and the {EVP} Model for
+                   Solving the Sea Ice Momentum Equation with a
+                   Viscous-Plastic Formulation: a Serial Algorithm
+                   Study},
+   journal =      jcp,
+   year =         2012,
+   volume =       231,
+   number =       17,
+   pages =        {5926--5944},
+   doi =          {10.1016/j.jcp.2012.05.024}}
+ @article{knoll04:_jfnk,
+   Author =       {D.A. Knoll and D.E. Keyes},
+   Title =        {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey
+                   of Approaches and Applications},
+   Journal =      jcp,
+   Year =         2004,
+   Volume =       193,
+   Pages =        {357--397},
+   doi =          {10.1016/j.jcp.2003.08.010},
+ }
+ @Article{saad93:_fgmres,
+   author =       {Y. Saad},
+   title =        {A Flexible Inner-Outer Preconditioned {GMRES}
+                   Method},
+   journal =      siscicom,
+   year =         1993,
+   volume =       14,
+   number =       2,
+   pages =        {461--469}}
+ @Article{Dutay02,
+  author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
+     and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
+     and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
+     and G. Madec and E. Maier-Reimer and J.C. Marshall and R.J. Matear and P. Monfray
+     and A. Mouchet and G.-K. Plattner and J. sarmiento and R. Schlitzer and R. Slater
+     and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
+  year           = 2002,
+  title          = {Evaluation of ocean model ventilation with CFC-11:
+                    comparison of 13 global ocean models},
+  journal        = om,
+  volume         = {4},          number= {},             month   = {},
+  pages          = {89-120}
+                 }
+ @Article{marsh06,
+  author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
+  year           = 2006,
+  title          = {Estimates and Implications of Surface Eddy Diffusivity
+                    in the Southern Ocean Derived from Tracer Transport},
+  journal        = jpo,
+  volume         = {36},          number= {},             month   = {},
+  pages          = {1806-1821}
+                 }
+ @InProceedings{hoe-hill:99,
+   author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
+   title =        {A Personal Supercomputer for Climate Research},
+   booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
+   year =         1999,
+   pages = {10.1109/SC.1999},
+   publisher =    {IEEE},
+ }
+ @Article{stevens:90,
+   author =       {Stevens, D. P.},
+   title =        {On Open Boundary Conditions for Three Dimensional
+                   Primitive Equation Ocean Circulation Models},
+   journal =      {Geophys. Astrophys. Fl. Dyn.},
+   year =         1990,
+   volume =       51,
+   pages =        {103--133}
+ }
+ @Article{moum96,
+   author        = {Moum, J.N.},
+   title         = {Energy-containing scales of turbulence in the ocean thermocline},
+   journal       = jgr,
+   year          = 1996,
+   volume        = {101 (C3)},
+   pages         = {14095--14109}
+ }
+ @Article{seimgregg94,
+   author        = {Seim, Harvey E. and Michael C. Gregg},
+   title         = {Detailed observations of a naturally occurring shear instability},
+   journal       = jgr,
+   year          = 1994,
+   volume        = {99 (C5)},
+   pages         = {10049--10073},
+ }
+ @Article{thorpe77,
+   author        = {Thorpe, S.A.},
+   title         = {Turbulence and mixing in a Scottish loch},
+   journal       = ptrsl,
+   year          = 1977,
+   volume        = {286},
+   pages         = {125--181}
+ }
+ @Article{wesson94,
+   author        = {Wesson, J. C. and  Michael C. Gregg},
+   title         = {Mixing at Camarinal Sill in the Strait of Gibraltar},
+   journal       = jgr,
+   year          = 1994,
+   volume        = {99 (C5)},
+   pages         = { 9847--9878}
+ }

 Legend:



Removed from v.1.24
 


changed lines


 
Added in v.1.56
 Legend:



Removed from v.1.24
 


changed lines


 
Added in v.1.56
-Removed from v.1.24
+Added in v.1.56

	ViewVC Help
Powered by ViewVC 1.1.22