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revision 1.24 by jmc, Wed Aug 31 18:51:42 2005 UTC revision 1.44 by dfer, Mon Jun 27 02:09:19 2011 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 30  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 69  Line 74 
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bugi-hill:06,
79      author = {V. Bugnion and C. Hill},
80      title = {Equilibration mechanisms in an adjoint ocean general
81               circulation model},
82      journal = {Ocean Dynamics},
83      year = {2006},
84      volume = {56},
85      number = {1},
86      pages = {51-61},
87      doi   = {10.1007/s10236-005-0052-z},
88    }
89    
90  @techreport{bis-roh:97,  @techreport{bis-roh:97,
91   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 133 
133   volume         = {120},   volume         = {120},
134   pages          = {1367--1387},   pages          = {1367--1387},
135                    }                    }
136    
137    @ARTICLE{durr:91,
138      author = {Dale R. Durran},
139      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140               to Leapfrog Time Differencing},
141      journal = mwr,
142      year = {1991},
143      volume = {119},
144      pages  = {702-720},
145    }
146    
147    
148    @ARTICLE{dutk-etal:06,
149      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150      title = {Controls on ocean productivity and air-sea carbon flux:
151               An adjoint model sensitivity study},
152      journal = grl,
153      year = {2006},
154      volume = {33},
155      pages  = {L02603},
156      doi    = {10.1029/2005GL024987},
157    }
158    
159  @Article{err:97,  @Article{err:97,
160   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 177  Line 216 
216   note           = {in press},   note           = {in press},
217                    }                    }
218    
219    @Article{fer-eta:05,
220     author         = {D. Ferreira and J. Marshall and P. Heimbach},
221     year           = 2005,
222     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal        = jpo,
225     volume         = {35},
226     pages          = {1891--1910},
227                      }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
242   year           = 1990,   year           = 1990,
243   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
244   journal        = jpo,   journal        = jpo,
# Line 187  Line 247 
247                    }                    }
248    
249  @Article{gen-eta:95,  @Article{gen-eta:95,
250   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
251   year           = 1995,   year           = 1995,
252   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
253   journal        = jpo,   journal        = jpo,
254   volume         = {25},   volume         = {25},
255   pages          = {463--474},   pages          = {463--474},
# Line 326  Line 384 
384                    }                    }
385    
386  @ARTICLE{hib80,  @ARTICLE{hib80,
387    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, William D.},
388    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
389    JOURNAL     = mwr,    JOURNAL     = mwr,
390    YEAR        = 1980,    YEAR        = 1980,
# Line 356  Line 414 
414   pages          = {658-669}   pages          = {658-669}
415                    }                    }
416    
417    @Article{jam-oze:86,
418     author         = {B.M. Jamart and J. Ozer},
419     year           = {1986},
420     title          = {Numerical boundary layers and spurious residual flows},
421     journal        = jgr,
422     volume         = {91},
423     pages          = {10,621-10,631}
424                      }
425    
426  @book{kas-eta:00,  @book{kas-eta:00,
427   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
428                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 371  Line 438 
438  @Article{lar-eta:94,  @Article{lar-eta:94,
439   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
440   year           = 1994,   year           = 1994,
441   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
442   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
443   volume         = {32},   volume         = {32},
444   pages          = {363--403},   pages          = {363--403},
# Line 452  Line 518 
518   pages          = {38 pp.},   pages          = {38 pp.},
519   address        = {Delft (NL)},   address        = {Delft (NL)},
520                    }                    }
521    
522    @ARTICLE{losc-heim:06,
523      author =       {Martin Losch and Patrick Heimbach},
524      title =        {Adjoint Sensitivity of an Ocean General Circulation
525                      Model to Bottom Topography},
526      journal =      jpo,
527      year =         2007,
528      volume =       37,
529      doi =          {10.1175/JPO3017.1},
530      number =       2,
531      pages =        {377--393},
532      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
533    }
534    
535    
536  @Article{maro-wun:93,  @Article{maro-wun:93,
537   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 498  Line 578 
578   pages          = {5,753--5,766},   pages          = {5,753--5,766},
579                    }                    }
580    
581  @Article{mars-sha:98,  @Article{mars-eta:98,
582   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
583   year           = 1998,   year           = 1998,
584   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 506  Line 586 
586   journal        = jms,   journal        = jms,
587   volume         = {18},   volume         = {18},
588   pages          = {115--134},   pages          = {115--134},
589     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
590     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
591                    }                    }
592    
593  @Article{mcw:96,  @Article{mol:09,
594   author         = {J. McWilliams},   author         = {Andrea Molod},
595   year           = 1996,   year           = 2009,
596   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
597   journal        = arfm,                     algorithm and tests},
598   volume         = {28},   journal        = tel,
599   pages          = {215--248},   volume         = {61A},
600     pages          = {381--393},
601                    }                    }
602    
603  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
# Line 525  Line 608 
608  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
609  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
610  %%   also available.  %%   also available.
611      
612    @incollection{naum-etal:06,
613            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
614            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
615            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
616            Pages = {~},
617            Publisher = {TU Delft},
618            Title = {Adjoint code by source transformation with OpenAD/F},
619            Year = {2006}}
620    
621    @Article{orl:76,
622     author         = {I. Orlanski},
623     year           = 1976,
624     title          = {A simple boundary condition for unbounded hyperbolic flows},
625     journal        = jcp,
626     volume         = {21},
627     pages          = {251--269},
628                    }
629    
630    @Article{pal-rom:97,
631     author         = {T. Paluszkiewicz and R.D. Romea},
632     year           = 1997,
633     title          = {A one-dimensional model for the parameterization
634                      of deep convection in the ocean},
635     journal        = dao,
636     volume         = {26},
637     pages          = {95--130},
638                      }
639    
640  @TechReport{rew:97,  @TechReport{rew:97,
641    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
# Line 572  Line 683 
683   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
684                    }                    }
685    
686    @article{utke-etal:08,
687            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
688            Date-Modified = {2007-11-19 10:15:08 -0500},
689            Journal = {{ACM} Transactions on Mathematical Software},
690            Pages = {~},
691            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
692            Volume = {34(4)},
693            Year = {2008}}
694    
695  @Article{DaSilva94,  @Article{DaSilva94,
696   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
697   year           = 1994,   year           = 1994,
# Line 581  Line 701 
701   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
702   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
703   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
704     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
705                    }                    }
706    
707  @techreport{sta-eta:97,  @techreport{stam-etal:97,
708   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
709                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
710                    C. Hill},                    C. Hill},
# Line 599  Line 720 
720   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
721                    }                    }
722    
723  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
724   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
725                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
726                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
727   year           = 2001,    year = {2002a},
728   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
729                    estimated from ocean observations and a general    pages = {3118},
730                    circulation model},    doi   = {10.1029/2001JC000888},
731   journal        = jgr,  }
732   note           = {in press},  
                   }  
733    
734  @Article{Stommel66,  @Article{Stommel66,
735   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 891 
891    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
892    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
893                   modeling},                   modeling},
894    journal =      {JGR},    journal =      jgr,
895    year =         1997,    year =         1997,
896    volume =       102,    volume =       102,
897    number =       {C3},    number =       {C3},
898    pages =        {5733-5752}    pages =        {5733-5752},
899      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
900  }  }
901    
902  @Article{marshall:97b,  @Article{marshall:97b,
903    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
904    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
905                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
906    journal =      {JGR},    journal =      jgr,
907    year =         1997,    year =         1997,
908    volume =       102,    volume =       102,
909    number =       {C3},    number =       {C3},
910    pages =        {5753-5766}    pages =        {5753-5766},
911      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
912  }  }
913    
914  @Article{adcroft:97,  @Article{adcroft:97,
915    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
916    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
917                    coordinate ocean model},                    coordinate ocean model},
918    journal =      {MWR},    journal =      mwr,
919    year =         1997,    year =         1997,
920    volume =       125,    volume =       125,
921    pages =        {2293-2315}    pages =        {2293-2315},
922      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
923      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
924  }  }
925    
926  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 806  Line 930 
930    journal =      om,    journal =      om,
931    year =         2004,    year =         2004,
932    volume =       7,    volume =       7,
933    pages =        {269-284}    pages =        {269-284},
934      doi   =        {10.1016/j.ocemod.2003.09.003},
935  }  }
936    
937  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 816  Line 941 
941    journal =      mwr,    journal =      mwr,
942    year =         2004,    year =         2004,
943    volume =       132,    volume =       132,
944    pages =        {2845-2863}    pages =        {2845-2863},
945      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
946      doi     =      {10.1175/MWR2823.1},
947    }
948    
949    @inproceedings{adcroft:04c,
950      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
951                      and P. Heimbach},
952      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
953      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
954                     Recent developments in numerical methods for atmosphere and
955                     ocean modelling},
956      year =         2004,
957      pages =        {139-149},
958      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
959     publisher =     ecmwf
960  }  }
961    
962  @Article{marshall:04,  @Article{marshall:04,
# Line 825  Line 965 
965    journal =      mwr,    journal =      mwr,
966    year =         2004,    year =         2004,
967    volume =       132,    volume =       132,
968    pages =        {2882-2894}    pages =        {2882-2894},
969      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
970      doi    =       {10.1175/MWR2835.1},
971  }  }
972    
973  @Article{visbeck:97,  @Article{visbeck:97,
974    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
975    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
976                    coarse-resolution ocean circulation models},    journal =      jpo,
   journal =      {JPO},  
977    year =         1997,    year =         1997,
978    volume =       27,    volume =       27,
979    number =       3,    number =       3,
# Line 852  Line 993 
993    pages =        {1-51}    pages =        {1-51}
994  }  }
995    
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   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
996  @Article{mjn:99,  @Article{mjn:99,
997    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
998    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 885  Line 1017 
1017    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
1018    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
1019                    at both high and low resolutions},                    at both high and low resolutions},
1020    journal =      {MWR},    journal =      mwr,
1021    year =         1999,    year =         1999,
1022    volume =       127,    volume =       127,
1023    pages =        {1928-1936}    pages =        {1928-1936},
1024      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1025      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1026  }  }
1027    
1028  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 903  Line 1037 
1037  @Article{wardle:00,  @Article{wardle:00,
1038    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
1039    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
1040    journal =      {JPO},    journal =      jpo,
1041    year =         2000,    year =         2000,
1042    volume =       30,    volume =       30,
1043    number =       10,    number =       10,
# Line 920  Line 1054 
1054  }  }
1055    
1056  @Article{adcroft:02,  @Article{adcroft:02,
1057    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1058    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1059    journal =      om,    journal =      om,
1060    year =         2002,    year =         2002,
# Line 942  Line 1076 
1076    author =       {Miller, M. J. and White, A. A.},    author =       {Miller, M. J. and White, A. A.},
1077    title =        {On the non-hydrostatic equations in pressure    title =        {On the non-hydrostatic equations in pressure
1078                    and sigma coordiantes},                    and sigma coordiantes},
1079    journal =      {qjrms},    journal =      qjrms,
1080    year =         1984,    year =         1984,
1081    volume =       110,    volume =       110,
1082    pages =        {515-533}    pages =        {515-533}
# Line 951  Line 1085 
1085  @Article{white:89,  @Article{white:89,
1086    author =       {White, A. A.},    author =       {White, A. A.},
1087    title =        {An extended version of a nonhydrostatic, pressure coordiante model},    title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1088    journal =      {qjrms},    journal =      qjrms,
1089    year =         1989,    year =         1989,
1090    volume =       115,    volume =       115,
1091    pages =        {1243-1251}    pages =        {1243-1251}
# Line 978  Line 1112 
1112    
1113  @Article{griffies:00,  @Article{griffies:00,
1114    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1115    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1116                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1117    journal =      {MWR},    journal =      mwr,
1118    year =         2000,    year =         2000,
1119    volume =       128,    volume =       128,
1120    number =       8,    number =       8,
# Line 991  Line 1125 
1125    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1126    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1127                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1128    journal =      {JCP},    journal =      jcp,
1129    year =         1993,    year =         1993,
1130    volume =       105,    volume =       105,
1131    number =       2,    number =       2,
# Line 1007  Line 1141 
1141    pages =        {221-244}    pages =        {221-244}
1142  }  }
1143    
1144    @Article{Cox87,
1145      author =       {M. D. Cox},
1146      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1147      journal =      {Ocean modelling},
1148      year =         1987,
1149      volume =       74,
1150      pages =        {1-5 (Unpublished manuscript)}
1151    }
1152    
1153    @Article{gretal:98,
1154      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1155      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1156      journal =      jpo,
1157      year =         1998,
1158      volume =       28,
1159      pages =        {805-830}
1160    }
1161    
1162    @ARTICLE{gr:98,
1163      author =       {S. M. Griffies},
1164      title =        {The {Gent-McWilliams} Skew Flux},
1165      journal =      jpo,
1166      year =         1998,
1167      volume =       28,
1168      pages =        {831-841}
1169    }
1170    
1171    
1172    @Article{gkw:91,
1173      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1174      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1175      journal =      climd,
1176      year =         1991,
1177      volume =       5,
1178      number =       4,
1179      pages =        {211-226},
1180      doi   =        {10.1007/BF00210006}
1181    }
1182    
1183  @Article{dm:95,  @Article{dm:95,
1184    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1185    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1186    journal =      {JC},    journal =      jclim,
1187    year =         1995,    year =         1995,
1188    volume =       8,    volume =       8,
1189    number =       12,    number =       12,
# Line 1018  Line 1191 
1191  }  }
1192    
1193  @Article{ldd:97,  @Article{ldd:97,
1194    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {W. G. Large and G. Danabasoglu and S. D. Doney and J. C. McWilliams},
1195    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1196    journal =      {JPO},    journal =      jpo,
1197    year =         1997,    year =         1997,
1198    volume =       27,    volume =       27,
1199    number =       11,    number =       11,
# Line 1028  Line 1201 
1201  }  }
1202    
1203  @Article{gkw:99,  @Article{gkw:99,
1204    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1205    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
1206                    coarse-resolution numerical models},    journal =      jpo,
   journal =      {JPO},  
1207    year =         1999,    year =         1999,
1208    volume =       29,    volume =       29,
1209    number =       8,    number =       8,
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1234  }  }
1235    
1236  @Article{molteni:03,  @Article{molteni:03,
1237    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1238    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1239                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1240                    multidecadal experiments},                    multidecadal experiments},
1241    journal =      climd,    journal =      climd,
1242    year =         2003,    year =         2003,
# Line 1134  Line 1306 
1306  }  }
1307    
1308  @ARTICLE{zha98a,  @ARTICLE{zha98a,
1309    AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele    AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
1310                   and D. A. Rothrock",                   and D. A. Rothrock",
1311    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1312    JOURNAL     = jpo,    JOURNAL     = jpo,
# Line 1163  Line 1335 
1335  }  }
1336    
1337  @ARTICLE{hib79,  @ARTICLE{hib79,
1338    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, W. D.},
1339    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1340    JOURNAL     = jpo,    JOURNAL     = jpo,
1341    YEAR        = 1979,    YEAR        = 1979,
# Line 1172  Line 1344 
1344  }  }
1345    
1346  @ARTICLE{fla92,  @ARTICLE{fla92,
1347    AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",    AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1348    TITLE       = "Modeling pack ice as a cavitating fluid",    TITLE       = "Modeling pack ice as a cavitating fluid",
1349    JOURNAL     = jpo,    JOURNAL     = jpo,
1350    YEAR        = 1992,    YEAR        = 1992,
# Line 1186  Line 1358 
1358    JOURNAL     = jpo,    JOURNAL     = jpo,
1359    YEAR        = 1997,    YEAR        = 1997,
1360    VOLUME      = 27,    VOLUME      = 27,
1361    PAGES       = "1849-1867"    PAGES       = "1849--1867"
1362    }
1363    
1364    @Article{hun01,
1365      author =       {Elizabeth C. Hunke},
1366      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1367                      Model: Linearization Issues},
1368      journal =      jcp,
1369      year =         2001,
1370      volume =       170,
1371      pages =        {18--38},
1372      doi =          {10.1006/jcph.2001.6710}
1373  }  }
1374    
1375  @ARTICLE{zha00,  @ARTICLE{zha00,
# Line 1195  Line 1378 
1378    JOURNAL     = jgr,    JOURNAL     = jgr,
1379    YEAR        = 2000,    YEAR        = 2000,
1380    VOLUME      = 105,    VOLUME      = 105,
1381    PAGES       = "3325-3338"    PAGES       = "3325--3338"
1382  }  }
1383    
1384  @Article{Shapiro_70,  @Article{Shapiro_70,
# Line 1237  Line 1420 
1420    title =        {Mechanisms of air-sea CO$_2$ flux variability in the    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1421                    Equatorial Pacific and the North Atlantic},                    Equatorial Pacific and the North Atlantic},
1422    journal =      {Global Biogeochemical Cycles},    journal =      {Global Biogeochemical Cycles},
1423    year =         {},    year =         {2004},
1424    OPTkey =       {},    OPTkey =       {},
1425    volume =       {18},    volume =       {18},
1426    number =       {doi:10.1029/2003GB002179},    number =       {doi:10.1029/2003GB002179},
# Line 1555  atmospheric boundary layer.}, Line 1738  atmospheric boundary layer.},
1738   volume         = {126},   volume         = {126},
1739   pages          = {991-1000}   pages          = {991-1000}
1740                    }                    }
1741    
1742    @TechReport{MPI-std-20,
1743      author =       {{Message Passing Interface Forum}},
1744      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1745      institution =  {mpi-forum.org},
1746      year =         {1998},
1747    }
1748    
1749    @Article{cam08,
1750      author =       {Jean-Michel Campin and John Marshall and David
1751                      Ferreira},
1752      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1753                      Coordinate z$^\ast$},
1754      journal =      om,
1755      volume =       24,
1756      number =       {1--2},
1757      pages =        {1--14},
1758      doi =          {10.1016/j.ocemod.2008.05.005},
1759      year =         2008
1760    }
1761    
1762    @Article{geiger98,
1763      author =       {Cathleen A. Geiger and Hibler, III, William D. and
1764                      Stephen F. Ackley},
1765      title =        {Large-Scale Sea Ice Drift and Deformation:
1766                      {C}omparison between Models and Observations in the
1767                      Western {W}eddell {S}ea during 1992},
1768      journal =      jgr,
1769      year =         1998,
1770      volume =       103,
1771      number =       {C10},
1772      pages =        {21893--21913}
1773    }
1774    
1775    @InCollection{hibler84,
1776      author =       {Hibler, III, William D.},
1777      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1778                      increases},
1779      booktitle =    {Climate processes and climate sensitivity},
1780      pages =        {238--253},
1781      publisher =    {AGU},
1782      year =         1984,
1783      editor =       {J. E. Hansen and T. Takahashi},
1784      volume =       29,
1785      series =       {Geophysical Monograph},
1786      address =      {Washington, D.C.}
1787    }
1788    
1789    @Article{hibler87,
1790      author =       {Hibler, III, William D. and Kirk Bryan},
1791      title =        {A Diagnostic Ice-Ocean Model},
1792      journal =      jpo,
1793      year =         1987,
1794      volume =       17,
1795      number =       7,
1796      pages =        {987--1015}
1797    }
1798    
1799    @InCollection{hibler95,
1800      author =       {Hibler, III, William D. and Chi F. Ip},
1801      title =        {The effect of sea ice rheology on {A}rcitc buoy
1802                      drift},
1803      booktitle =    {Ice Mechanics},
1804      pages =        {255--264},
1805      publisher =    {Am. Soc. of Mech. Eng.},
1806      year =         1995,
1807      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1808      volume =       204,
1809      series =       {AMD},
1810      address =      {New York}
1811    }
1812    
1813    @Article{hibler97,
1814      author =       {Hibler, III, William D. and Erland M. Schulson},
1815      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1816                      Investigations of Climate},
1817      journal =      angl,
1818      year =         1997,
1819      volume =       25,
1820      pages =        {26--32}
1821    }
1822    
1823    @Article{hundsdorfer94,
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1831      pages =        {469--490},
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1837      title =        {A Growth Model for Black Ice, Snow Ican and Snow
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1847      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1848                      Variation for Future Studies of Climate Sensitivity},
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1857                      J.-M. Campin and B. Cheng and B. Ciotti and
1858                      I. Fukumori and A. Koehl and P. Heimbach and
1859                      C. Henze and T. Lee and D. Stammer and J. Taft and
1860                      J. Zhang},
1861      title =        {{NASA} Supercomputer Improves Prospects for Ocean
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1872      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1873      journal =      jgr,
1874      year =         1979,
1875      month =        jan,
1876      volume =       84,
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1878      pages =        {311--337},
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1880      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
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1882    }
1883    
1884    @Article{semtner84,
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1886      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1887                      Ice in Studies of Climatic Change},
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1897      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
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1906      author =       {Jinlun Zhang and Drew A. Rothrock},
1907      title =        {Modeling Global Sea Ice with a Thickness and
1908                      Enthalpy Distribution Model in Generalized
1909                      Curvilinear Coordinates},
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1920      title =        {A Numerical Model of the {W}eddell {S}ea:
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1931                      Determann},
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1943      title =        {A Two-Dimensional Model of the Thermohaline
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1945      journal =      {Antarct. Sci.},
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1953      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
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1965      title =        {The Role of Meltwater Advection in the Formulation
1966                      of Conservative Boundary Conditions at an Ice-Ocean
1967                      Interface},
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1976                      General Circulation Model},
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1987        and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
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1992     title          = {Evaluation of ocean model ventilation with CFC-11:
1993                       comparison of 13 global ocean models},
1994     journal        = om,
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2033                      C. Ropelewski and J. Wang and A. Leetmaa and
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2035      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
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2040    }
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