--- manual/manual_references.bib	2005/08/31 18:51:42	1.24
+++ manual/manual_references.bib	2006/06/28 14:06:13	1.28
@@ -5,8 +5,10 @@
 @string{jgr	= {J.~Geophys.~Res.}}
 @string{ijrs	= {Int.~J.~Remote Sensing}}
 @string{jas	= {J.~Atmos.~Sci.}}
+@string{jam	= {J.~Appl.~Meteor.}}
 @string{jpo	= {J.~Phys.~Oceanogr.}}
 @string{jclim	= {J.~Clim.}}
+@string{jcp	= {J.~Comput.~Phys.}}
 @string{ieee	= {IEEE Trans.~Geosci. Remote Sensing}}
 @string{jfm	= {J.~Fluid Mech.}}
 @string{jaot	= {J.~Atmos.~Ocean.~Technol.}}
@@ -581,6 +583,7 @@
  publisher	= {U.S. Department of Commerce},
  address	= {Washington, D.C. (USA)},
  note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
+ url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
 		  }
  
 @techreport{sta-eta:97,
@@ -771,7 +774,7 @@
   author = 	 {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
   title = 	 {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
                  modeling},
-  journal = 	 {JGR},
+  journal = 	 jgr,
   year = 	 1997,
   volume =	 102,
   number =	 {C3},
@@ -782,7 +785,7 @@
   author = 	 {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
   title = 	 {A finite-volume, incompressible Navier Stokes model for
                   studies of the ocean on parallel computers},
-  journal = 	 {JGR},
+  journal = 	 jgr,
   year = 	 1997,
   volume =	 102,
   number =	 {C3},
@@ -793,7 +796,7 @@
   author = 	 {Adcroft, A.J. and Hill, C.N. and J. Marshall},
   title = 	 {Representation of topography by shaved cells in a height
                   coordinate ocean model},
-  journal = 	 {MWR},
+  journal = 	 mwr,
   year = 	 1997,
   volume =	 125,
   pages =	 {2293-2315}
@@ -806,7 +809,8 @@
   journal = 	 om,
   year = 	 2004,
   volume =	 7,
-  pages =	 {269-284}
+  pages =	 {269-284},
+  doi   =        {10.1016/j.ocemod.2003.09.003},
 }
 
 @Article{adcroft:04b,
@@ -832,7 +836,7 @@
   author = 	 {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
   title = 	 {Specification of eddy transfer coefficients in
                   coarse-resolution ocean circulation models},
-  journal = 	 {JPO},
+  journal = 	 jpo,
   year = 	 1997,
   volume =	 27,
   number =	 3,
@@ -885,7 +889,7 @@
   author = 	 {Adcroft, A., Hill C. and J. Marshall},
   title = 	 {A new treatment of the Coriolis terms in C-grid models
                   at both high and low resolutions},
-  journal = 	 {MWR},
+  journal = 	 mwr,
   year = 	 1999,
   volume =	 127,
   pages =	 {1928-1936}
@@ -903,7 +907,7 @@
 @Article{wardle:00,
   author = 	 {Wardle R. and Marshall J.},
   title = 	 {Representation of eddies in primitive equation models by a PV flux},
-  journal = 	 {JPO},
+  journal = 	 jpo,
   year = 	 2000,
   volume =	 30,
   number =	 10,
@@ -920,7 +924,7 @@
 }
 
 @Article{adcroft:02,
-  author = 	 {Adcroft et al.},
+  author = 	 {Adcroft, A., et~al.},
   title = 	 {Energy conversion in discrete numerical models},
   journal = 	 om,
   year = 	 2002,
@@ -942,7 +946,7 @@
   author = 	 {Miller, M. J. and White, A. A.},
   title = 	 {On the non-hydrostatic equations in pressure
                   and sigma coordiantes},
-  journal = 	 {qjrms},
+  journal = 	 qjrms,
   year = 	 1984,
   volume =	 110,
   pages =	 {515-533}
@@ -951,7 +955,7 @@
 @Article{white:89,
   author = 	 {White, A. A.},
   title = 	 {An extended version of a nonhydrostatic, pressure coordiante model},
-  journal = 	 {qjrms},
+  journal = 	 qjrms,
   year = 	 1989,
   volume =	 115,
   pages =	 {1243-1251}
@@ -980,7 +984,7 @@
   author = 	 {Griffies, S.,M. and Hallberg, R.,W.},
   title = 	 {Biharmonic friction with a Smagorinsky-like viscosity for
                   use in large-scale eddy-permitting ocean models},
-  journal = 	 {MWR},
+  journal = 	 mwr,
   year = 	 2000,
   volume =	 128,
   number =	 8,
@@ -991,7 +995,7 @@
   author = 	 {Wajsowicz, R.},
   title = 	 {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
                   FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
-  journal = 	 {JCP},
+  journal = 	 jcp,
   year = 	 1993,
   volume =	 105,
   number =	 2,
@@ -1010,7 +1014,7 @@
 @Article{dm:95,
   author = 	 {Danabasoglu, G. and McWilliams J.C.},
   title = 	 {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
-  journal = 	 {JC},
+  journal = 	 jclim,
   year = 	 1995,
   volume =	 8,
   number =	 12,
@@ -1020,7 +1024,7 @@
 @Article{ldd:97,
   author = 	 {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
   title = 	 {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
-  journal = 	 {JPO},
+  journal = 	 jpo,
   year = 	 1997,
   volume =	 27,
   number =	 11,
@@ -1031,7 +1035,7 @@
   author = 	 {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
   title = 	 {Mechanisms for spreading of Mediterranean water in
                   coarse-resolution numerical models},
-  journal = 	 {JPO},
+  journal = 	 jpo,
   year = 	 1999,
   volume =	 29,
   number =	 8,
@@ -1062,9 +1066,9 @@
 }
 
 @Article{molteni:03,
-  author =	 {K. M. Trenberth and J. Olson and W. G. Large},
+  author =	 {F. Molteni},
   title =	 {Atmospheric simulations using a GCM with simplified physical
-                  parametrization, I model climatology and variability in 
+                  parametrizations, I: Model climatology and variability in 
                   multidecadal experiments},
   journal =	 climd,
   year =	 2003,
@@ -1237,7 +1241,7 @@
   title = 	 {Mechanisms of air-sea CO$_2$ flux variability in the 
                   Equatorial Pacific and the North Atlantic},
   journal = 	 {Global Biogeochemical Cycles},
-  year = 	 {},
+  year = 	 {2004},
   OPTkey = 	 {},
   volume = 	 {18},
   number = 	 {doi:10.1029/2003GB002179},
@@ -1555,3 +1559,10 @@
  volume         = {126}, 
  pages          = {991-1000}
                   }
+@TechReport{MPI-std-20,
+  author = 	 {{Message Passing Interface Forum}}},
+  title = 	 {{MPI}: A Message-Passing Interface standard (version 2.0)},
+  institution =  {mpi-forum.org},
+  year = 	 {1998},
+}
+