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# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{climd   = {Clim.~Dynamics}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{cch     = {Clim.\ Change}}
7    @string{cup     = {Cambridge University Press}}
8    @string{dao     = {Dyn.~Atmos.~Oceans}}
9    @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
10    @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
11    @string{dsr     = {Deep Sea Res.}}
12    @string{ecmwf   = {ECMWF}}
13    @string{eos     = {Eos~Trans.\ AGU}}
14    @string{esa     = {European Space Agency (ESA)}}
15    @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16    @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
17    @string{gaos    = {Global Atmos.~Ocean System}}
18    @string{grl     = {Geophys.~Res.~Lett.}}
19    @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
20    @string{ifremer = {IFREMER/CERSAT}}
21    @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
22    @string{jam     = {J.~Appl.~Meteor.}}
23    @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
24  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
 @string{jpo     = {J.~Phys.~Oceanogr.}}  
25  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
26  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{jcp     = {J.~Comput.~Phys.}}
27  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
28  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jgr     = {J.~Geophys.~Res.}}
29    @string{ijrs    = {Int.~J.~Remote Sensing}}
30  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
31  @string{gaos    = {Global Atmos.~Ocean System}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
32  @string{grl     = {Geophys.~Res.~Lett.}}  @string{mpi     = {MPI f\"ur Meteorologie}}
 @string{dsr     = {Deep Sea Res.}}  
 @string{dao     = {Dyn.~Atmos.~Oceans}}  
33  @string{mwr     = {Mon.~Wea.~Rev.}}  @string{mwr     = {Mon.~Wea.~Rev.}}
34    @string{om      = {Ocean Modelling}}
35    @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
37    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38  @string{tel     = {Tellus}}  @string{tel     = {Tellus}}
 @string{cup     = {Cambridge University Press}}  
 @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}  
 @string{ifremer = {IFREMER/CERSAT}}  
 @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}  
 @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}  
 @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}  
 @string{mpi     = {MPI f\"ur Meteorologie}}  
 @string{ecmwf   = {ECMWF}}  
 @string{estec   = {European Space Research and Technology Centre  
                         (ESTEC)}}  
 @string{esa     = {European Space Agency (ESA)}}  
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 39  Line 47 
47   volume         = {3},   volume         = {3},
48   pages          = {625--638},   pages          = {625--638},
49                    }                    }
50    
51  @incollection{bis:94,  @incollection{bis:94,
52   author         = {C.H. Bishof},   author         = {C.H. Bishof},
53   year           = 1994,   year           = 1994,
# Line 52  Line 60 
60   publisher      = {Kluwer},   publisher      = {Kluwer},
61   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
62                    }                    }
63    
64  @techreport{bis-eta:94,  @techreport{bis-eta:94,
65   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
66                    A. Maurer},                    A. Maurer},
# Line 63  Line 71 
71                    Computer Science Division},                    Computer Science Division},
72   type           = {Argonne Preprint},   type           = {Argonne Preprint},
73   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
74   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
75                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @Article{bouillon13,
80      author =       {Sylvain Bouillon and Thierry Fichefet and Vincent
81                      Legat and Gurvan Madec},
82      title =        {The Elastic-Viscous-Plastic Method Revisited},
83      journal =      om,
84      volume =       71,
85      number =       0,
86      pages =        {2--12},
87      year =         2013,
88      note =         {Arctic Ocean},
89      issn =         {1463-5003},
90      doi =          {10.1016/j.ocemod.2013.05.013},
91      url =          {http://dx.doi.org/10.1016/j.ocemod.2013.05.013},
92    }
93    @ARTICLE{bryan:84,
94      author = {Kirk Bryan},
95      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
96      journal = jpo,
97      year = {1984},
98      volume = {14},
99      number = {4},
100      pages = {666-673},
101    }
102    
103    @ARTICLE{bugi-hill:06,
104      author = {V. Bugnion and C. Hill},
105      title = {Equilibration mechanisms in an adjoint ocean general
106               circulation model},
107      journal = {Ocean Dynamics},
108      year = {2006},
109      volume = {56},
110      number = {1},
111      pages = {51-61},
112      doi   = {10.1007/s10236-005-0052-z},
113    }
114    
115  @techreport{bis-roh:97,  @techreport{bis-roh:97,
116   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
117   year           = 1997,   year           = 1997,
# Line 77  Line 121 
121                    Computer Science Division},                    Computer Science Division},
122   type           = {Argonne Preprint},   type           = {Argonne Preprint},
123   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
124   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
125                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
126   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
127                    }                    }
128    
129    @Article{castro-morales14,
130      author =       {Karel Castro-Morales and Frank Kauker and Martin
131                      Losch and Stefan Hendricks and Kathrin Riemann-Campe
132                      and R{\"u}diger Gerdes},
133      title =        {Sensitivity of Simulated {A}rctic Sea Ice to
134                      Realistic Ice Thickness Distributions and Snow
135                      Parameterizations},
136      journal =      jgr,
137      issn =         {2169-9291},
138      year =         2014,
139      volume =       119,
140      number =       1,
141      pages =        {559--571},
142      url =          {http://dx.doi.org/10.1002/2013JC009342},
143      doi =          {10.1002/2013JC009342},
144    }
145    
146  @Article{cou-tal:87,  @Article{cou-tal:87,
147   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
148   year           = 1987,   year           = 1987,
149   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
150                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
151                    II: Numerical results},                    II: Numerical results},
152   journal        = qjrms,   journal        = qjrms,
153   volume         = {113},   volume         = {113},
154   pages          = {1329--1347},   pages          = {1329--1347},
155                    }                    }
156    
157  @Article{cou-tal:90,  @Article{cou-tal:90,
158   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
159   year           = 1990,   year           = 1990,
# Line 103  Line 164 
164   volume         = {42A},   volume         = {42A},
165   pages          = {531--549},   pages          = {531--549},
166                    }                    }
167    
168  @Article{cou-eta:94,  @Article{cou-eta:94,
169   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
170                    A. Hollingsworth},                    A. Hollingsworth},
# Line 114  Line 175 
175   volume         = {120},   volume         = {120},
176   pages          = {1367--1387},   pages          = {1367--1387},
177                    }                    }
178    
179    @ARTICLE{durr:91,
180      author = {Dale R. Durran},
181      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
182               to Leapfrog Time Differencing},
183      journal = mwr,
184      year = {1991},
185      volume = {119},
186      pages  = {702-720},
187    }
188    
189    
190    @ARTICLE{dutk-etal:06,
191      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
192      title = {Controls on ocean productivity and air-sea carbon flux:
193               An adjoint model sensitivity study},
194      journal = grl,
195      year = {2006},
196      volume = {33},
197      pages  = {L02603},
198      doi    = {10.1029/2005GL024987},
199    }
200    
201  @Article{err:97,  @Article{err:97,
202   author         = {R.M. Errico},   author         = {R.M. Errico},
203   year           = 1997,   year           = 1997,
# Line 123  Line 206 
206   volume         = {78},   volume         = {78},
207   pages          = {2577--2591},   pages          = {2577--2591},
208                    }                    }
209    
210  @Article{far-moo:92,  @Article{far-moo:92,
211   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
212   year           = {1992},   year           = {1992},
# Line 133  Line 216 
216   volume         = {22},   volume         = {22},
217   pages          = {338--349},   pages          = {338--349},
218                    }                    }
219    
220  @Article{far-ioa:96a,  @Article{far-ioa:96a,
221   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
222   year           = {1996a},   year           = {1996a},
# Line 143  Line 226 
226   volume         = {53},   volume         = {53},
227   pages          = {2025--2040},   pages          = {2025--2040},
228                    }                    }
229    
230  @Article{far-ioa:96b,  @Article{far-ioa:96b,
231   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
232   year           = {1996b},   year           = {1996b},
# Line 153  Line 236 
236   volume         = {53},   volume         = {53},
237   pages          = {2041--2053},   pages          = {2041--2053},
238                    }                    }
239    
240  @techreport{fau-pap:98,  @techreport{fau-pap:98,
241   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
242   year           = 1998,   year           = 1998,
# Line 166  Line 249 
249                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
250   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
251                    }                    }
252    
253  @Article{fau:00,  @Article{fau:00,
254   author         = {C. Faure},   author         = {C. Faure},
255   year           = {2000},   year           = {2000},
# Line 174  Line 257 
257   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
258   note           = {in press},   note           = {in press},
259                    }                    }
260    
261    @Article{fer-eta:05,
262     author         = {D. Ferreira and J. Marshall and P. Heimbach},
263     year           = 2005,
264     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
265                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
266     journal        = jpo,
267     volume         = {35},
268     pages          = {1891--1910},
269                      }
270    
271    @Article{for-eta:15,
272     author         = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.},
273     title          = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation},
274     journal        = {Geoscientific Model Development},
275     volume         = {8},
276     year           = {2015},
277     number         = {10},
278     pages          = {3071--3104},
279     url            = {http://www.geosci-model-dev.net/8/3071/2015/},
280     doi            = {10.5194/gmd-8-3071-2015}
281    }
282    
283    @Article{gas-eta:90,
284     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
285     year           = 1990,
286     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
287                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
288                       Upper Ocean Study Site},
289     journal        = jgr,
290     volume         = {95 (C9)},
291     pages          = {16,179--16,193},
292                      }
293    
294  @Article{gen-mcw:90,  @Article{gen-mcw:90,
295   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
296   year           = 1990,   year           = 1990,
297   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
298   journal        = jpo,   journal        = jpo,
299   volume         = {20},   volume         = {20},
300   pages          = {150--155},   pages          = {150--155},
301                    }                    }
302    
303  @Article{gen-eta:95,  @Article{gen-eta:95,
304   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
305   year           = 1995,   year           = 1995,
306   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
307   journal        = jpo,   journal        = jpo,
308   volume         = {25},   volume         = {25},
309   pages          = {463--474},   pages          = {463--474},
310                    }                    }
311    
312  @Article{gie-kam:98,  @Article{gie-kam:98,
313   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
314   year           = 1998,   year           = 1998,
# Line 207  Line 321 
321  @techreport{gie:99,  @techreport{gie:99,
322   author         = {R. Giering},   author         = {R. Giering},
323   year           = 1999,   year           = 1999,
324   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
325                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
326   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
327   type           = {Report},   type           = {Report},
# Line 216  Line 330 
330                    02139; USA},                    02139; USA},
331   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
332                    }                    }
333    
334  @incollection{gie:00,  @incollection{gie:00,
335   author         = {R. Giering},   author         = {R. Giering},
336   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 240  Line 354 
354   volume         = {45},   volume         = {45},
355   pages          = {407--435},   pages          = {407--435},
356                    }                    }
357    
358  @book{gil-eta:81,  @book{gil-eta:81,
359   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
360   title          = {Practical optimization},   title          = {Practical optimization},
361   year           = 1981,   year           = 1981,
362   publisher      = {Academic Press},   publisher      = {Academic Press},
363   address        = {London},   address        = {London},
364   pages          = {401 pp.},   pages          = {401 pp.},
365                    }                    }
366                                                                      
367    @incollection{gri:89,
368     author         = {A. Griewank},
369     year           = 1989,
370     title          = {On automatic differentiation},
371     booktitle      = {Mathematical Programming: Recent Developments and
372                      Applications},
373     pages          = {83--108},
374     editor         = {M. Iri and K. Tanabe},
375     publisher      = {Kluwer},
376     address        = {Dordrecht, NL},
377                      }
378    
379    @Article{gri:92,
380      author =       {A.~Griewank},
381      title =        {Achieving logarithmic growth of temporal and spatial
382      complexity in reverse {A}utomatic {D}ifferentiation},
383      journal       = {Optimization Methods and Software},
384      year          = {1992},
385      volume        = {1},
386      pages         = {35--54}
387    }
388    
389  @book{gri:00,  @book{gri:00,
390   author         = {A. Griewank},   author         = {A. Griewank},
391   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 258  Line 394 
394   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
395   volume         = {19},   volume         = {19},
396   publisher      = {SIAM},   publisher      = {SIAM},
397   address        = {Philadelphia},   address        = {Philadelphia},
398   pages          = {369 pp.},   pages          = {369 pp.},
399                    }                    }
400                                                                      
401  @Article{hal-eta:82,  @Article{hal-eta:82,
402   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
403   year           = 1982,   year           = 1982,
# Line 271  Line 407 
407   volume         = {39},   volume         = {39},
408   pages          = {2038--3050},   pages          = {2038--3050},
409                    }                    }
410    
411    @Article{Haney,
412      author =       {R.L. Haney},
413      title =        {Surface thermal boundary conditions for ocean
414                      circulation models},
415      journal =      jpo,
416      year =         1971,
417      volume =       1,
418      pages =        {241--248}
419    }
420    
421    @Article{held-suar:94,
422     author         = {I.M. Held and M.J. Suarez},
423     year           = {1994},
424     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
425     journal        = {Bulletin of the American Meteorological Society},
426     volume         = {75(10)},
427     pages          = {1825-1830}
428    }
429    
430    
431    @article{heim-eta:11,
432      title         = {Timescales and regions of the sensitivity of {Atlantic} meridional volume and heat transport: Toward observing system design},
433      author        = {Heimbach, Patrick and Wunsch, Carl and Ponte, Rui M and Forget, Gael and Hill, Chris and Utke, Jean},
434      journal       = {Deep Sea Research Part II: Topical Studies in Oceanography},
435      volume        = {58},
436      number        = {17},
437      pages         = {1858--1879},
438      year          = {2011},
439      publisher     = {Elsevier}
440    }
441    
442  @Article{hil-eta:01,  @Article{hil-eta:01,
443   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
444                    J. Marshall},                    J. Marshall},
445   year           = {2001},   year           = {2002},
446   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
447                    circulation on carbon sequestration},                    circulation on carbon sequestration},
448   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
449   note           = {submitted},   note           = {submitted},
450                    }                    }
451    
452    @ARTICLE{hib80,
453      author =       {Hibler, III, William D.},
454      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
455      JOURNAL     = mwr,
456      YEAR        = 1980,
457      VOLUME      = 1,
458      PAGES       = "1943-1973"
459    }
460    
461    @Article{Holland75,
462     author         = {W.R. Holland and L. B. Lin},
463     year           = {1975a},
464     title          = {On the origin of mesoscale eddies and their contribution
465                       to the general circulation of the ocean. I. A preliminary
466                       numerical experiment},
467     journal        = jpo,
468     volume         = {5},
469     pages          = {642-657}
470                      }
471    
472    @Article{hol-lin:75b,
473     author         = {W.R. Holland and L. B. Lin},
474     year           = {1975b},
475     title          = {On the origin of mesoscale eddies and their contribution
476                       to the general circulation of the ocean. II. A parameter
477                       study},
478     journal        = jpo,
479     volume         = {5},
480     pages          = {658-669}
481                      }
482    
483    @Article{jam-oze:86,
484     author         = {B.M. Jamart and J. Ozer},
485     year           = {1986},
486     title          = {Numerical boundary layers and spurious residual flows},
487     journal        = jgr,
488     volume         = {91},
489     pages          = {10,621-10,631}
490                      }
491    
492  @book{kas-eta:00,  @book{kas-eta:00,
493   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
494                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 297  Line 504 
504  @Article{lar-eta:94,  @Article{lar-eta:94,
505   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
506   year           = 1994,   year           = 1994,
507   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
508   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
509   volume         = {32},   volume         = {32},
510   pages          = {363--403},   pages          = {363--403},
511                    }                    }
512    
513  @Article{lar-eta:97,  @Article{lar-eta:97,
514   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
515                    and J.C. McWilliams},                    and J. C. McWilliams},
516   year           = 1997,   year           = 1997,
517   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
518                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
519   journal        = jpo,   journal        = jpo,
520   volume         = {27},   volume         = {27},
521     number         = 11,
522   pages          = {2418--2447},   pages          = {2418--2447},
523                    }                    }
524    
525  @Article{led-tal:86,  @Article{led-tal:86,
526   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
527   year           = 1986,   year           = 1986,
# Line 326  Line 532 
532   volume         = {38A},   volume         = {38A},
533   pages          = {97--110},   pages          = {97--110},
534                    }                    }
535    
536    @TechReport{lev:94a,
537      author =       {S. Levitus and T.P.Boyer},
538      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
539      institution =  {NOAA Atlas NESDIS 3},
540      year =         1994,
541      OPTkey =       {},
542      OPTtype =      {},
543      OPTnumber =    {},
544      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
545      OPTmonth =     {},
546      OPTnote =      {},
547      OPTannote =    {}
548    }
549    
550    
551    @TechReport{Levitus94,
552      author =       {S. Levitus and T.P.Boyer},
553      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
554      institution =  {NOAA Atlas NESDIS 4},
555      year =         1994,
556      OPTkey =       {},
557      OPTtype =      {},
558      OPTnumber =    {},
559      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
560      OPTmonth =     {},
561      OPTnote =      {},
562      OPTannote =    {}
563    }
564    
565    
566  @Article{lew-der:85,  @Article{lew-der:85,
567   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
568   year           = {1985},   year           = {1985},
# Line 336  Line 572 
572   volume         = {37A},   volume         = {37A},
573   pages          = {309--322},   pages          = {309--322},
574                    }                    }
575    
576  @techreport{lon:88,  @techreport{lon:88,
577   author         = {R.B. Long},   author         = {R.B. Long},
578   year           = 1988,   year           = 1988,
# Line 348  Line 584 
584   pages          = {38 pp.},   pages          = {38 pp.},
585   address        = {Delft (NL)},   address        = {Delft (NL)},
586                    }                    }
587    
588    @ARTICLE{losc-heim:06,
589      author =       {Martin Losch and Patrick Heimbach},
590      title =        {Adjoint Sensitivity of an Ocean General Circulation
591                      Model to Bottom Topography},
592      journal =      jpo,
593      year =         2007,
594      volume =       37,
595      doi =          {10.1175/JPO3017.1},
596      number =       2,
597      pages =        {377--393},
598      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
599    }
600    
601    
602  @Article{maro-wun:93,  @Article{maro-wun:93,
603   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
604   year           = 1993,   year           = 1993,
# Line 359  Line 609 
609   volume         = {98, C11},   volume         = {98, C11},
610   pages          = {20,149--20,167},   pages          = {20,149--20,167},
611                    }                    }
612    
613  @Article{maro-eta:99,  @Article{maro-eta:99,
614   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
615                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
616   year           = 1999,   year           = 1999,
617   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 371  Line 621 
621   volume         = {104, C12},   volume         = {104, C12},
622   pages          = {29,529--29,547},   pages          = {29,529--29,547},
623                    }                    }
624    
625  @Article{mars-eta:97a,  @Article{mars-eta:97a,
626   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
627                    A. Adcroft},                    A. Adcroft},
# Line 382  Line 632 
632   volume         = {102, C3},   volume         = {102, C3},
633   pages          = {5,733--5,752},   pages          = {5,733--5,752},
634                    }                    }
635    
636  @Article{mars-eta:97b,  @Article{mars-eta:97b,
637   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
638                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
639   year           = {1997b},   year           = {1997b},
640   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 393  Line 643 
643   volume         = {102, C3},   volume         = {102, C3},
644   pages          = {5,753--5,766},   pages          = {5,753--5,766},
645                    }                    }
646    
647  @Article{mars-sha:98,  @Article{mars-eta:98,
648   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
649   year           = 1998,   year           = 1998,
650   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 652 
652   journal        = jms,   journal        = jms,
653   volume         = {18},   volume         = {18},
654   pages          = {115--134},   pages          = {115--134},
655     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
656     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
657                    }                    }
658    
659  @Article{mcw:96,  @Article{mol:09,
660   author         = {J. McWilliams},   author         = {Andrea Molod},
661   year           = 1996,   year           = 2009,
662   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
663   journal        = arfm,                     algorithm and tests},
664   volume         = {28},   journal        = tel,
665   pages          = {215--248},   volume         = {61A},
666     pages          = {381--393},
667                    }                    }
668    
669    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
670    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
671    %% (Available from Unidata or in PostScript form by anonymous FTP from
672    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
673    %%   a hypertext version of the User's Guide available at
674    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
675    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
676    %%   also available.
677    
678    @incollection{naum-etal:06,
679            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
680            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
681            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
682            Pages = {~},
683            Publisher = {TU Delft},
684            Title = {Adjoint code by source transformation with OpenAD/F},
685            Year = {2006}}
686    
687    @Article{orl:76,
688     author         = {I. Orlanski},
689     year           = 1976,
690     title          = {A simple boundary condition for unbounded hyperbolic flows},
691     journal        = jcp,
692     volume         = {21},
693     pages          = {251--269},
694                    }
695    
696    @Article{pal-rom:97,
697     author         = {T. Paluszkiewicz and R.D. Romea},
698     year           = 1997,
699     title          = {A one-dimensional model for the parameterization
700                      of deep convection in the ocean},
701     journal        = dao,
702     volume         = {26},
703     pages          = {95--130},
704                      }
705    
706    @TechReport{rew:97,
707      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
708      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
709                      An Interface for Data Access, Version 3},
710      institution =  {Unidata Program Center},
711      type =         {Report},
712      address =      {Boulder, Colorado},
713      year =         1997,
714      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
715    }
716    
717    
718  @Article{res-eta:98,  @Article{res-eta:98,
719   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
720   year           = 1998,   year           = 1998,
721   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
722                    data assimilation studies},                    data assimilation studies},
723   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
724   volume         = {19},   volume         = {19},
725   pages          = {1586--1605},   pages          = {1586--1605},
726                    }                    }
727    
728  @Article{ros-eta:93,  @Article{ros-eta:93,
729   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
730   year           = 1993,   year           = 1993,
# Line 431  Line 733 
733   volume         = {45A},   volume         = {45A},
734   pages          = {558--568},   pages          = {558--568},
735                    }                    }
736    
737  @incollection{she-and:89,  @incollection{she-and:89,
738   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
739   year           = 1989,   year           = 1989,
740   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
741                    technique},                    technique},
742   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
743                    Combining data and dynamics},                    Combining data and dynamics},
# Line 446  Line 748 
748   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
749   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
750                    }                    }
751    
752  @techreport{sta-eta:97,  @article{utke-etal:08,
753      Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
754                      and M. Strout and P. Heimbach and C. Hill and
755                      D. Ozyurt and C. Wunsch},
756      Date-Modified ={2007-11-19 10:15:08 -0500},
757      Journal =      {{ACM} Transactions on Mathematical Software},
758      Pages =        {~},
759      Title =        {OpenAD/F: A modular open source tool for automatic
760                      differentiation of Fortran codes},
761      Volume =       {34(4)},
762      Year =         2008
763    }
764    
765    @Article{DaSilva94,
766     author         = {A. da Silva and A. C. Young and S. Levitus},
767     year           = 1994,
768     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
769     journal        = {NOAA Atlas NESDIS},
770     volume         = {6},
771     publisher      = {U.S. Department of Commerce},
772     address        = {Washington, D.C. (USA)},
773     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
774     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
775                      }
776    
777    @techreport{stam-etal:97,
778   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
779                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
780                    C. Hill},                    C. Hill},
781   year           = 1997,   year           = 1997,
782   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
783                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
784                    model},                    model},
785   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 462  Line 789 
789   pages          = {40 pp.},   pages          = {40 pp.},
790   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
791                    }                    }
792    
793  @Article{sta-eta:01,  @article{stam-etal:02,
794   author         = {D. Stammer and C. Wunsch and R. Giering and    author =       {D. Stammer and C. Wunsch and R. Giering and
795                    C. Eckert and P. Heimbach and J. Marotzke and                    C. Eckert and P. Heimbach and J. Marotzke and
796                    A. Adcroft and C. Hill and J. Marshall},                    A. Adcroft and C.N. Hill and J. Marshall},
797   year           = 2001,    title =        {The global ocean circulation and transports during
798   title          = {The global ocean circulation during 1992 -- 1997,                    1992 -- 1997, estimated from ocean observations and
799                    estimated from ocean observations and a general                    a general circulation model.},
800                    circulation model},    journal =      jgr,
801   journal        = jgr,    year =         {2002a},
802   note           = {submitted},    volume =       {107(C9)},
803      pages =        {3118},
804      doi =          {10.1029/2001JC000888},
805    }
806    
807    
808    @Article{Stommel66,
809     author         = {H. Stommel},
810     year           = 1948,
811     title          = {The western intensification of wind-driven ocean currents},
812     journal        = {Trans. Am. Geophys. Union},
813     volume         = {29},
814     pages          = {206},
815                    }                    }
816    
817  @Article{tal-cou:87,  @Article{tal-cou:87,
818   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
819   year           = 1987,   year           = 1987,
820   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
821                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
822                    I: Theory},                    I: Theory},
823   journal        = qjrms,   journal        = qjrms,
824   volume         = {113},   volume         = {113},
825   pages          = {1311--1328},   pages          = {1311--1328},
826                    }                    }
827    
828  @Article{tal:97,  @Article{tal:97,
829   author         = {O. Talagrand},   author         = {O. Talagrand},
830   year           = 1997,   year           = 1997,
# Line 494  Line 833 
833   volume         = {75},   volume         = {75},
834   pages          = {191--209},   pages          = {191--209},
835                    }                    }
836    
837  @book{tar:87,  @book{tar:87,
838   author         = {A. Tarantola},   author         = {A. Tarantola},
839   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
840                    and model parameter estimation},                    and model parameter estimation},
841   year           = 1987,   year           = 1987,
842   publisher      = {Elsevier},   publisher      = {Elsevier},
843   address        = {Amsterdam},   address        = {Amsterdam},
844   pages          = {629 pp.},   pages          = {629 pp.},
845                    }                    }
846                                                                      
847  @techreport{tha:87,  @techreport{tha:87,
848   author         = {W.C. Thacker},   author         = {W.C. Thacker},
849   year           = 1987,   year           = 1987,
# Line 516  Line 855 
855   pages          = {64 pp.},   pages          = {64 pp.},
856   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
857                    }                    }
858    
859  @Article{tha-lon:88,  @Article{tha-lon:88,
860   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
861   year           = 1988,   year           = 1988,
# Line 525  Line 864 
864   volume         = {93, C2},   volume         = {93, C2},
865   pages          = {1,227--1,240},   pages          = {1,227--1,240},
866                    }                    }
867    
868  @Article{tha:88,  @Article{tha:88,
869   author         = {W.C. Thacker},   author         = {W.C. Thacker},
870   year           = 1988,   year           = 1988,
# Line 535  Line 874 
874   volume         = {93},   volume         = {93},
875   pages          = {10,655--10,665},   pages          = {10,655--10,665},
876                    }                    }
877    
878  @Article{tha:89,  @Article{tha:89,
879   author         = {W.C. Thacker},   author         = {W.C. Thacker},
880   year           = 1989,   year           = 1989,
# Line 545  Line 884 
884   volume         = {94, C5},   volume         = {94, C5},
885   pages          = {6,177--6,196},   pages          = {6,177--6,196},
886                    }                    }
887    
888  @Article{tha-rag:94,  @Article{tha-rag:94,
889   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
890   year           = 1994,   year           = 1994,
# Line 555  Line 894 
894   volume         = {99, C5},   volume         = {99, C5},
895   pages          = {10,131--10,141},   pages          = {10,131--10,141},
896                    }                    }
897    
898  @Article{tzi-tha:89,  @Article{tzi-tha:89,
899   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
900   year           = {1989},   year           = {1989},
# Line 565  Line 904 
904   volume         = {19},   volume         = {19},
905   pages          = {1471--1485},   pages          = {1471--1485},
906                    }                    }
907    
908  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
909   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
910                    S. Hwang},                    S. Hwang},
# Line 576  Line 915 
915   volume         = {22},   volume         = {22},
916   pages          = {1434--1457},   pages          = {1434--1457},
917                    }                    }
918    
919  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
920   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
921                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 587  Line 926 
926   volume         = {22},   volume         = {22},
927   pages          = {1458--1485},   pages          = {1458--1485},
928                    }                    }
929    
930  @book{wun:96,  @book{wun:96,
931   author         = {C. Wunsch},   author         = {C. Wunsch},
932   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
933   year           = 1996,   year           = 1996,
934   publisher      = cup,   publisher      = cup,
935   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
936   pages          = {442 pp.},   pages          = {442 pp.},
937                    }                    }
938                                                                      
939  @Article{zha-mar:99,  @Article{zha-mar:99,
940   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
941   year           = 1999,   year           = 1999,
# Line 606  Line 945 
945   volume         = {57},   volume         = {57},
946   pages          = {305--334},   pages          = {305--334},
947                    }                    }
948    
949    
950    @InCollection{hill:95,
951      author =       {Hill, C. and J. Marshall},
952      title =        {Application of a Parallel Navier-Stokes Model to
953                      Ocean Circulation in Parallel Computational Fluid
954                      Dynamics},
955      booktitle =    {Implementations and Results Using Parallel
956                      Computers},
957      pages =        {545-552},
958      publisher =    {Elsevier Science B.V.: New York},
959      year =         1995,
960      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
961    }
962    
963    
964    @Article{marshall:97a,
965      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
966      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
967                     modeling},
968      journal =      jgr,
969      year =         1997,
970      volume =       102,
971      number =       {C3},
972      pages =        {5733-5752},
973      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
974    }
975    
976    @Article{marshall:97b,
977      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
978      title =        {A finite-volume, incompressible Navier Stokes model for
979                      studies of the ocean on parallel computers},
980      journal =      jgr,
981      year =         1997,
982      volume =       102,
983      number =       {C3},
984      pages =        {5753-5766},
985      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
986    }
987    
988    @Article{adcroft:97,
989      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
990      title =        {Representation of topography by shaved cells in a height
991                      coordinate ocean model},
992      journal =      mwr,
993      year =         1997,
994      volume =       125,
995      pages =        {2293-2315},
996      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
997      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
998    }
999    
1000    @Article{adcroft:04a,
1001      author =       {Adcroft, A. and J.-M. Campin},
1002      title =        {Re-scaled height coordinates for accurate representation
1003                      of free-surface flows in ocean circulation models},
1004      journal =      om,
1005      year =         2004,
1006      volume =       7,
1007      pages =        {269-284},
1008      doi   =        {10.1016/j.ocemod.2003.09.003},
1009    }
1010    
1011    @Article{adcroft:04b,
1012      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
1013      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
1014                      on the Expanded Spherical Cube},
1015      journal =      mwr,
1016      year =         2004,
1017      volume =       132,
1018      pages =        {2845-2863},
1019      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
1020      doi     =      {10.1175/MWR2823.1},
1021    }
1022    
1023    @inproceedings{adcroft:04c,
1024      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
1025                      and P. Heimbach},
1026      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
1027      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
1028                     Recent developments in numerical methods for atmosphere and
1029                     ocean modelling},
1030      year =         2004,
1031      pages =        {139-149},
1032      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
1033     publisher =     ecmwf
1034    }
1035    
1036    @Article{marshall:04,
1037      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
1038      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
1039      journal =      mwr,
1040      year =         2004,
1041      volume =       132,
1042      pages =        {2882-2894},
1043      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
1044      doi    =       {10.1175/MWR2835.1},
1045    }
1046    
1047    @Article{visbeck:97,
1048      author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
1049      title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
1050      journal =      jpo,
1051      year =         1997,
1052      volume =       27,
1053      number =       3,
1054      pages =        {381-402}
1055    }
1056    
1057    @Article{shaw:98,
1058      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
1059                      and Marshall, J.},
1060      title =        {A comparison of implicitly parallel multi-threaded and
1061                      data-parallel implementations of an ocean model based
1062                      on the Navier-Stokes equations},
1063      journal =      {J. of Parallel and Distributed Computing},
1064      year =         1998,
1065      volume =       48,
1066      number =       1,
1067      pages =        {1-51}
1068    }
1069    
1070    @Article{mjn:99,
1071      author =       {Marshall, J., Jamous, D and J. Nilsson},
1072      title =        {Reconciling `thermodynamic' and `dynamic' methods of
1073                      computation of water-mass transformation rates},
1074      journal =      {DSR},
1075      year =         1999,
1076      volume =       46,
1077      pages =        {545-572}
1078    }
1079    
1080    @Article{ms:99,
1081      author =       {Marshall, J and F. Schott},
1082      title =        {Open ocean deep convection: observations, models and theory},
1083      journal =      {Rev. Geophys.},
1084      year =         1999,
1085      volume =       37,
1086      number =       1,
1087      pages =        {1-64}
1088    }
1089    
1090    @Article{adcroft:99,
1091      author =       {Adcroft, A., Hill C. and J. Marshall},
1092      title =        {A new treatment of the Coriolis terms in C-grid models
1093                      at both high and low resolutions},
1094      journal =      mwr,
1095      year =         1999,
1096      volume =       127,
1097      pages =        {1928-1936},
1098      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1099      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1100    }
1101    
1102    @InProceedings{hill:99,
1103      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1104      title =        {A Strategy for Terascale Climate Modeling},
1105      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1106      year =         1999,
1107      pages = {406-425},
1108      publisher =    {World Scientific},
1109    }
1110    
1111    @Article{wardle:00,
1112      author =       {Wardle R. and Marshall J.},
1113      title =        {Representation of eddies in primitive equation models by a PV flux},
1114      journal =      jpo,
1115      year =         2000,
1116      volume =       30,
1117      number =       10,
1118      pages =        {2481-2503}
1119    }
1120    
1121    @Article{ac:02,
1122      author =       {Adcroft, A. and J.-M. Campin},
1123      title =        {Comparison of finite volume schemes and direct-space-time
1124                      methods for ocean circulation models},
1125      journal =      om,
1126      year =         2002,
1127      note =         {in preparation}
1128    }
1129    
1130    @Article{adcroft:02,
1131      author =       {Adcroft, A., et~al.},
1132      title =        {Energy conversion in discrete numerical models},
1133      journal =      om,
1134      year =         2002,
1135      note =         {in preparation}
1136    }
1137    
1138    @InCollection{arakawa:77,
1139      author =       {Arakawa, A. and Lamb, V.},
1140      title =        {Computational Design of the Basic Dynamical Processes of
1141                      the UCLA General Circulation Model},
1142      booktitle =    {Methods in Computational Physics},
1143      pages =        {174-267},
1144      publisher =    {Academic Press},
1145      year =         1977,
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1270      journal={Journal of physical oceanography},
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1304     title          = {Some contributions to the modelling of discontinuous flows},
1305     booktitle      = {Large-Scale Computations in Fluid Mechanics},
1306     series         = {Lectures in Applied Mathematics},
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1308     pages          = {163-193},
1309     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
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1311     address        = {Providence, RI},
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1409                     numerical investigations of climate",
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1465      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
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1484      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1485                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
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1487      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1488      year =         {2005},
1489      OPTnumber =    {122},
1490      address =      {Cambridge, MA},
1491      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1492    }
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1496      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1497                      Biogeochemistry Models},
1498      journal =      {Ocean Modeling},
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1510      journal =      {Global Biogeochemical Cycles},
1511      year =         {2004},
1512      OPTkey =       {},
1513      volume =       {18},
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1520      title =        {A global wind stress climatology based on ECMWF analyses},
1521      institution =  {NCAR},
1522      year =         {1989},
1523      OPTkey =       {},
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1525      number =       {NCAR/TN-338+STR},
1526      address =      {Boulder, CO},
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1528    }
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1531      author =       {R. Wanninkhof},
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1554     title        = {A solar radiation model for use in climate studies.},
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1577     number       = {104606-Vol 3},
1578     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1603     title        = {A global climatology of albedo, roughness length and stomatal
1604    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1605     journal      = jam,
1606     volume       = {28},
1607     pages        = {833-855}
1608    }
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1610    @Article{helflab:88,
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1612     year         = {1988},
1613     title        = { Design of a non-singular level 2.5 second-order closure
1614    model for the prediction of atmospheric turbulence. },
1615     journal      = jas,
1616     volume       = {45},
1617     pages        = {113-132}
1618    }
1619    
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1622     year         = {1991},
1623     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1624     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1625     year         = 1991,
1626     pages        = {406-425},
1627     publisher    = {American Meteorological Society}
1628    }
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1633     title        = { Climatology of the
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1635    Continental Moisture Budget of the United States. },
1636     journal      = jclim,
1637     volume       = {8},
1638     pages        = {784-806}
1639    }
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1641    @Article{kondo:75,
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1647     pages        = {91-112}
1648    }
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1654     institution  = {National Aeronautics and Space Administration},
1655     type         = {NASA Technical Memorandum},
1656     number       = {104538},
1657     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1658     note         = {http://www.gmao.nasa.gov/},
1659    }
1660    
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1663     year         = {1992},
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1665    in Climate Models as a Composite of Independent Vegetation Stands.},
1666     journal      = jgr,
1667     volume       = {97},
1668     pages        = {2697-2715}
1669    }
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1675    in the Earth's atmosphere.  },
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1677     volume       = {31},
1678     pages        = {118-133}
1679    }
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1685     journal      = jpo,
1686     volume       = {11},
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1694    convection for general circulation models.},
1695     journal      = mwr,
1696     volume       = {120},
1697     pages        = {978-1002}
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1707    }
1708    
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1715     pages        = {929-948}
1716    }
1717    
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1721     title        = {  A computation of the stratospheric
1722    diabatic circulation using an accurate radiative transfer model},
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1724     volume       = {44},
1725     pages        = {859-876}
1726    }
1727    
1728    @Article{sudm:88,
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1730     year         = {1988},
1731     title        = {  The roles of dry convection, cloud-radiation feedback processes
1732    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1733     journal      = mwr,
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1735     pages        = {2366-2387}
1736    }
1737    
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1741     title        = {  Dynamical aspects of climate simulations Using the GEOS
1742    General Circulation Model},
1743     institution  = {National Aeronautics and Space Administration},
1744     type         = {NASA Technical Memorandum},
1745     number       = {104606 Volume 10},
1746     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1747     note         = {http://www.gmao.nasa.gov/},
1748    }
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1753     title        = {Heat and mass transfer between a rough wall and
1754    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1755     journal      = jfm,
1756     volume       = {62},
1757     pages        = {601-623}
1758    }
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1764    atmospheric boundary layer.},
1765     journal      = {Atmos. Environ.},
1766     volume       = {11},
1767     pages        = {1015-1024}
1768    }
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1772     year         = {1995},
1773     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1774     journal      = qjrms,
1775     volume       = {122},
1776     pages        = {903-927}
1777    }
1778    
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1781                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1782                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1783                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
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1785     title          = {An intercomparison of radiatively driven entrainment and turbulence
1786                      in a smoke cloud, as simulated by different numerical models.},
1787     journal        = qjrms,
1788     volume         = {125},
1789     pages          = {391-423}
1790                      }
1791    
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1796     journal        = {Climate Dyn.},
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1798     pages          = {293-318}
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1806     journal        = {Climate Dyn.},
1807     volume         = {17},
1808     pages          = {777-794}
1809                      }
1810    
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1815     title          = {Rules for Interchange of Physical Parameterizations.},
1816     journal        = bams,
1817     volume         = {70},
1818     pages          = {620-622}
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1825     journal        = mwr,
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1827     pages          = {991-1000}
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1829    
1830    @TechReport{MPI-std-20,
1831      author =       {{Message Passing Interface Forum}},
1832      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1833      institution =  {mpi-forum.org},
1834      year =         {1998},
1835    }
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1837    @Article{cam08,
1838      author =       {Jean-Michel Campin and John Marshall and David
1839                      Ferreira},
1840      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1841                      Coordinate z$^\ast$},
1842      journal =      om,
1843      volume =       24,
1844      number =       {1--2},
1845      pages =        {1--14},
1846      doi =          {10.1016/j.ocemod.2008.05.005},
1847      year =         2008
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1853      title =        {Large-Scale Sea Ice Drift and Deformation:
1854                      {C}omparison between Models and Observations in the
1855                      Western {W}eddell {S}ea during 1992},
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1858      volume =       103,
1859      number =       {C10},
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1865      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1866                      increases},
1867      booktitle =    {Climate processes and climate sensitivity},
1868      pages =        {238--253},
1869      publisher =    {AGU},
1870      year =         1984,
1871      editor =       {J. E. Hansen and T. Takahashi},
1872      volume =       29,
1873      series =       {Geophysical Monograph},
1874      address =      {Washington, D.C.}
1875    }
1876    
1877    @Article{hibler87,
1878      author =       {Hibler, III, William D. and Kirk Bryan},
1879      title =        {A Diagnostic Ice-Ocean Model},
1880      journal =      jpo,
1881      year =         1987,
1882      volume =       17,
1883      number =       7,
1884      pages =        {987--1015}
1885    }
1886    
1887    @InCollection{hibler95,
1888      author =       {Hibler, III, William D. and Chi F. Ip},
1889      title =        {The effect of sea ice rheology on {A}rcitc buoy
1890                      drift},
1891      booktitle =    {Ice Mechanics},
1892      pages =        {255--264},
1893      publisher =    {Am. Soc. of Mech. Eng.},
1894      year =         1995,
1895      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1896      volume =       204,
1897      series =       {AMD},
1898      address =      {New York}
1899    }
1900    
1901    @Article{hibler97,
1902      author =       {Hibler, III, William D. and Erland M. Schulson},
1903      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1904                      Investigations of Climate},
1905      journal =      angl,
1906      year =         1997,
1907      volume =       25,
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1909    }
1910    
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1913      title =        {Method of Lines and Direct Discretization: a
1914                      Comparison for Linear Advection},
1915      journal =      {Applied Numerical Mathematics},
1916      year =         1994,
1917      volume =       13,
1918      number =       6,
1919      pages =        {469--490},
1920      doi =          {10.1016/0168-9274(94)90009-4}
1921    }
1922    
1923    @Article{leppaeranta83,
1924      author =       {Matti Lepp{\"a}ranta},
1925      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1926                      Thickness in Subarctic Basins},
1927      journal =      {Nordic Hydrology},
1928      year =         1983,
1929      volume =       14,
1930      pages =        {59--70}
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1932    
1933    @Article{manabe79,
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1935      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1936                      Variation for Future Studies of Climate Sensitivity},
1937      journal =      dao,
1938      year =         1979,
1939      volume =       3,
1940      number =       {393--426}
1941    }
1942    
1943    @Article{menemenlis05,
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1945                      J.-M. Campin and B. Cheng and B. Ciotti and
1946                      I. Fukumori and A. Koehl and P. Heimbach and
1947                      C. Henze and T. Lee and D. Stammer and J. Taft and
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1949      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1950                      Climate Research},
1951      journal =      eos,
1952      year =         2005,
1953      volume =       86,
1954      number =       9,
1955      pages =        {89, 95--96}
1956    }
1957    
1958    @Article{parkinson79,
1959      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1960      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1961      journal =      jgr,
1962      year =         1979,
1963      month =        jan,
1964      volume =       84,
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1966      pages =        {311--337},
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1968      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
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1971    
1972    @Article{semtner84,
1973      author =       {Semtner, Jr., Albert J.},
1974      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1975                      Ice in Studies of Climatic Change},
1976      journal =      cch,
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1982    
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1985      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1986      journal =      jgr,
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1992    
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1995      title =        {Modeling Global Sea Ice with a Thickness and
1996                      Enthalpy Distribution Model in Generalized
1997                      Curvilinear Coordinates},
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2008      title =        {A Numerical Model of the {W}eddell {S}ea:
2009                      Large-Scale Circulation and Water Mass Distribution},
2010      journal =      jgr,
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2029    @Article{hellmer89,
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2031      title =        {A Two-Dimensional Model of the Thermohaline
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2039    @Article{holland99,
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2041      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
2042                      Base of an Ice Shelf},
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2050    @Article{hutchings04,
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2052                      W. Laxon},
2053      title =        {A Strength Implicit Correction Scheme for the
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2091      title =        {On the Convergence of the Modified
2092                      Elastic-Viscous-Plastic Method of Solving for
2093                      Sea-Ice Dynamics},
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2139      title =        {On the formulation of sea-ice models. {P}art 1:
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2152                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
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2177      title =        {Improving the Numerical Convergence of
2178                      Viscous-Plastic Sea Ice Models with the
2179                      {J}acobian-Free {N}ewton-{K}rylov Method},
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2187      author =       {Jean-Fran{\c{c}}ois Lemieux and Dana Knoll and Bruno
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2189      title =        {A Comparison of the {J}acobian-free
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2191                      Solving the Sea Ice Momentum Equation with a
2192                      Viscous-Plastic Formulation: a Serial Algorithm
2193                      Study},
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