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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.50 by jmc, Sat Aug 30 15:27:46 2014 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{climd   = {Clim.~Dynamics}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{cch     = {Clim.\ Change}}
7    @string{cup     = {Cambridge University Press}}
8    @string{dao     = {Dyn.~Atmos.~Oceans}}
9    @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
10    @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
11    @string{dsr     = {Deep Sea Res.}}
12    @string{ecmwf   = {ECMWF}}
13    @string{eos     = {Eos~Trans.\ AGU}}
14    @string{esa     = {European Space Agency (ESA)}}
15    @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16    @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
17    @string{gaos    = {Global Atmos.~Ocean System}}
18    @string{grl     = {Geophys.~Res.~Lett.}}
19    @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
20    @string{ifremer = {IFREMER/CERSAT}}
21    @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
22    @string{jam     = {J.~Appl.~Meteor.}}
23    @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
24  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
 @string{jpo     = {J.~Phys.~Oceanogr.}}  
25  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
26  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{jcp     = {J.~Comput.~Phys.}}
27  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
28  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jgr     = {J.~Geophys.~Res.}}
29    @string{ijrs    = {Int.~J.~Remote Sensing}}
30  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
31  @string{gaos    = {Global Atmos.~Ocean System}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
32  @string{grl     = {Geophys.~Res.~Lett.}}  @string{mpi     = {MPI f\"ur Meteorologie}}
 @string{dsr     = {Deep Sea Res.}}  
 @string{dao     = {Dyn.~Atmos.~Oceans}}  
33  @string{mwr     = {Mon.~Wea.~Rev.}}  @string{mwr     = {Mon.~Wea.~Rev.}}
34    @string{om      = {Ocean Modelling}}
35    @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
37    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38  @string{tel     = {Tellus}}  @string{tel     = {Tellus}}
 @string{cup     = {Cambridge University Press}}  
 @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}  
 @string{ifremer = {IFREMER/CERSAT}}  
 @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}  
 @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}  
 @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}  
 @string{mpi     = {MPI f\"ur Meteorologie}}  
 @string{ecmwf   = {ECMWF}}  
 @string{estec   = {European Space Research and Technology Centre  
                         (ESTEC)}}  
 @string{esa     = {European Space Agency (ESA)}}  
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 39  Line 47 
47   volume         = {3},   volume         = {3},
48   pages          = {625--638},   pages          = {625--638},
49                    }                    }
50    
51  @incollection{bis:94,  @incollection{bis:94,
52   author         = {C.H. Bishof},   author         = {C.H. Bishof},
53   year           = 1994,   year           = 1994,
# Line 52  Line 60 
60   publisher      = {Kluwer},   publisher      = {Kluwer},
61   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
62                    }                    }
63    
64  @techreport{bis-eta:94,  @techreport{bis-eta:94,
65   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
66                    A. Maurer},                    A. Maurer},
# Line 63  Line 71 
71                    Computer Science Division},                    Computer Science Division},
72   type           = {Argonne Preprint},   type           = {Argonne Preprint},
73   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
74   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
75                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @ARTICLE{bryan:84,
80      author = {Kirk Bryan},
81      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
82      journal = jpo,
83      year = {1984},
84      volume = {14},
85      number = {4},
86      pages = {666-673},
87    }
88    
89    @ARTICLE{bugi-hill:06,
90      author = {V. Bugnion and C. Hill},
91      title = {Equilibration mechanisms in an adjoint ocean general
92               circulation model},
93      journal = {Ocean Dynamics},
94      year = {2006},
95      volume = {56},
96      number = {1},
97      pages = {51-61},
98      doi   = {10.1007/s10236-005-0052-z},
99    }
100    
101  @techreport{bis-roh:97,  @techreport{bis-roh:97,
102   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
103   year           = 1997,   year           = 1997,
# Line 77  Line 107 
107                    Computer Science Division},                    Computer Science Division},
108   type           = {Argonne Preprint},   type           = {Argonne Preprint},
109   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
110   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
111                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
112   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
113                    }                    }
114    
115  @Article{cou-tal:87,  @Article{cou-tal:87,
116   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
117   year           = 1987,   year           = 1987,
118   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
119                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
120                    II: Numerical results},                    II: Numerical results},
121   journal        = qjrms,   journal        = qjrms,
122   volume         = {113},   volume         = {113},
123   pages          = {1329--1347},   pages          = {1329--1347},
124                    }                    }
125    
126  @Article{cou-tal:90,  @Article{cou-tal:90,
127   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
128   year           = 1990,   year           = 1990,
# Line 103  Line 133 
133   volume         = {42A},   volume         = {42A},
134   pages          = {531--549},   pages          = {531--549},
135                    }                    }
136    
137  @Article{cou-eta:94,  @Article{cou-eta:94,
138   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
139                    A. Hollingsworth},                    A. Hollingsworth},
# Line 114  Line 144 
144   volume         = {120},   volume         = {120},
145   pages          = {1367--1387},   pages          = {1367--1387},
146                    }                    }
147    
148    @ARTICLE{durr:91,
149      author = {Dale R. Durran},
150      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
151               to Leapfrog Time Differencing},
152      journal = mwr,
153      year = {1991},
154      volume = {119},
155      pages  = {702-720},
156    }
157    
158    
159    @ARTICLE{dutk-etal:06,
160      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
161      title = {Controls on ocean productivity and air-sea carbon flux:
162               An adjoint model sensitivity study},
163      journal = grl,
164      year = {2006},
165      volume = {33},
166      pages  = {L02603},
167      doi    = {10.1029/2005GL024987},
168    }
169    
170  @Article{err:97,  @Article{err:97,
171   author         = {R.M. Errico},   author         = {R.M. Errico},
172   year           = 1997,   year           = 1997,
# Line 123  Line 175 
175   volume         = {78},   volume         = {78},
176   pages          = {2577--2591},   pages          = {2577--2591},
177                    }                    }
178    
179  @Article{far-moo:92,  @Article{far-moo:92,
180   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
181   year           = {1992},   year           = {1992},
# Line 133  Line 185 
185   volume         = {22},   volume         = {22},
186   pages          = {338--349},   pages          = {338--349},
187                    }                    }
188    
189  @Article{far-ioa:96a,  @Article{far-ioa:96a,
190   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
191   year           = {1996a},   year           = {1996a},
# Line 143  Line 195 
195   volume         = {53},   volume         = {53},
196   pages          = {2025--2040},   pages          = {2025--2040},
197                    }                    }
198    
199  @Article{far-ioa:96b,  @Article{far-ioa:96b,
200   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
201   year           = {1996b},   year           = {1996b},
# Line 153  Line 205 
205   volume         = {53},   volume         = {53},
206   pages          = {2041--2053},   pages          = {2041--2053},
207                    }                    }
208    
209  @techreport{fau-pap:98,  @techreport{fau-pap:98,
210   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
211   year           = 1998,   year           = 1998,
# Line 166  Line 218 
218                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
219   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
220                    }                    }
221    
222  @Article{fau:00,  @Article{fau:00,
223   author         = {C. Faure},   author         = {C. Faure},
224   year           = {2000},   year           = {2000},
# Line 174  Line 226 
226   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
227   note           = {in press},   note           = {in press},
228                    }                    }
229    
230    @Article{fer-eta:05,
231     author         = {D. Ferreira and J. Marshall and P. Heimbach},
232     year           = 2005,
233     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
234                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
235     journal        = jpo,
236     volume         = {35},
237     pages          = {1891--1910},
238                      }
239    
240    @Article{gas-eta:90,
241     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
242     year           = 1990,
243     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
244                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
245                       Upper Ocean Study Site},
246     journal        = jgr,
247     volume         = {95 (C9)},
248     pages          = {16,179--16,193},
249                      }
250    
251  @Article{gen-mcw:90,  @Article{gen-mcw:90,
252   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
253   year           = 1990,   year           = 1990,
254   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
255   journal        = jpo,   journal        = jpo,
256   volume         = {20},   volume         = {20},
257   pages          = {150--155},   pages          = {150--155},
258                    }                    }
259    
260  @Article{gen-eta:95,  @Article{gen-eta:95,
261   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
262   year           = 1995,   year           = 1995,
263   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
264   journal        = jpo,   journal        = jpo,
265   volume         = {25},   volume         = {25},
266   pages          = {463--474},   pages          = {463--474},
267                    }                    }
268    
269  @Article{gie-kam:98,  @Article{gie-kam:98,
270   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
271   year           = 1998,   year           = 1998,
# Line 207  Line 278 
278  @techreport{gie:99,  @techreport{gie:99,
279   author         = {R. Giering},   author         = {R. Giering},
280   year           = 1999,   year           = 1999,
281   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
282                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
283   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
284   type           = {Report},   type           = {Report},
# Line 216  Line 287 
287                    02139; USA},                    02139; USA},
288   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
289                    }                    }
290    
291  @incollection{gie:00,  @incollection{gie:00,
292   author         = {R. Giering},   author         = {R. Giering},
293   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 240  Line 311 
311   volume         = {45},   volume         = {45},
312   pages          = {407--435},   pages          = {407--435},
313                    }                    }
314    
315  @book{gil-eta:81,  @book{gil-eta:81,
316   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
317   title          = {Practical optimization},   title          = {Practical optimization},
318   year           = 1981,   year           = 1981,
319   publisher      = {Academic Press},   publisher      = {Academic Press},
320   address        = {London},   address        = {London},
321   pages          = {401 pp.},   pages          = {401 pp.},
322                    }                    }
323                                                                      
324    @incollection{gri:89,
325     author         = {A. Griewank},
326     year           = 1989,
327     title          = {On automatic differentiation},
328     booktitle      = {Mathematical Programming: Recent Developments and
329                      Applications},
330     pages          = {83--108},
331     editor         = {M. Iri and K. Tanabe},
332     publisher      = {Kluwer},
333     address        = {Dordrecht, NL},
334                      }
335    
336    @Article{gri:92,
337      author =       {A.~Griewank},
338      title =        {Achieving logarithmic growth of temporal and spatial
339      complexity in reverse {A}utomatic {D}ifferentiation},
340      journal       = {Optimization Methods and Software},
341      year          = {1992},
342      volume        = {1},
343      pages         = {35--54}
344    }
345    
346  @book{gri:00,  @book{gri:00,
347   author         = {A. Griewank},   author         = {A. Griewank},
348   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 258  Line 351 
351   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
352   volume         = {19},   volume         = {19},
353   publisher      = {SIAM},   publisher      = {SIAM},
354   address        = {Philadelphia},   address        = {Philadelphia},
355   pages          = {369 pp.},   pages          = {369 pp.},
356                    }                    }
357                                                                      
358  @Article{hal-eta:82,  @Article{hal-eta:82,
359   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
360   year           = 1982,   year           = 1982,
# Line 271  Line 364 
364   volume         = {39},   volume         = {39},
365   pages          = {2038--3050},   pages          = {2038--3050},
366                    }                    }
367    
368    @Article{Haney,
369      author =       {R.L. Haney},
370      title =        {Surface thermal boundary conditions for ocean
371                      circulation models},
372      journal =      jpo,
373      year =         1971,
374      volume =       1,
375      pages =        {241--248}
376    }
377    
378    @Article{held-suar:94,
379     author         = {I.M. Held and M.J. Suarez},
380     year           = {1994},
381     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
382     journal        = {Bulletin of the American Meteorological Society},
383     volume         = {75(10)},
384     pages          = {1825-1830}
385    }
386    
387  @Article{hil-eta:01,  @Article{hil-eta:01,
388   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
389                    J. Marshall},                    J. Marshall},
390   year           = {2001},   year           = {2002},
391   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
392                    circulation on carbon sequestration},                    circulation on carbon sequestration},
393   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
394   note           = {submitted},   note           = {submitted},
395                    }                    }
396    
397    @ARTICLE{hib80,
398      author =       {Hibler, III, William D.},
399      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
400      JOURNAL     = mwr,
401      YEAR        = 1980,
402      VOLUME      = 1,
403      PAGES       = "1943-1973"
404    }
405    
406    @Article{Holland75,
407     author         = {W.R. Holland and L. B. Lin},
408     year           = {1975a},
409     title          = {On the origin of mesoscale eddies and their contribution
410                       to the general circulation of the ocean. I. A preliminary
411                       numerical experiment},
412     journal        = jpo,
413     volume         = {5},
414     pages          = {642-657}
415                      }
416    
417    @Article{hol-lin:75b,
418     author         = {W.R. Holland and L. B. Lin},
419     year           = {1975b},
420     title          = {On the origin of mesoscale eddies and their contribution
421                       to the general circulation of the ocean. II. A parameter
422                       study},
423     journal        = jpo,
424     volume         = {5},
425     pages          = {658-669}
426                      }
427    
428    @Article{jam-oze:86,
429     author         = {B.M. Jamart and J. Ozer},
430     year           = {1986},
431     title          = {Numerical boundary layers and spurious residual flows},
432     journal        = jgr,
433     volume         = {91},
434     pages          = {10,621-10,631}
435                      }
436    
437  @book{kas-eta:00,  @book{kas-eta:00,
438   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
439                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 297  Line 449 
449  @Article{lar-eta:94,  @Article{lar-eta:94,
450   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
451   year           = 1994,   year           = 1994,
452   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
453   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
454   volume         = {32},   volume         = {32},
455   pages          = {363--403},   pages          = {363--403},
456                    }                    }
457    
458  @Article{lar-eta:97,  @Article{lar-eta:97,
459   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
460                    and J.C. McWilliams},                    and J. C. McWilliams},
461   year           = 1997,   year           = 1997,
462   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
463                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
464   journal        = jpo,   journal        = jpo,
465   volume         = {27},   volume         = {27},
466     number         = 11,
467   pages          = {2418--2447},   pages          = {2418--2447},
468                    }                    }
469    
470  @Article{led-tal:86,  @Article{led-tal:86,
471   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
472   year           = 1986,   year           = 1986,
# Line 326  Line 477 
477   volume         = {38A},   volume         = {38A},
478   pages          = {97--110},   pages          = {97--110},
479                    }                    }
480    
481    @TechReport{lev:94a,
482      author =       {S. Levitus and T.P.Boyer},
483      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
484      institution =  {NOAA Atlas NESDIS 3},
485      year =         1994,
486      OPTkey =       {},
487      OPTtype =      {},
488      OPTnumber =    {},
489      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
490      OPTmonth =     {},
491      OPTnote =      {},
492      OPTannote =    {}
493    }
494    
495    
496    @TechReport{Levitus94,
497      author =       {S. Levitus and T.P.Boyer},
498      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
499      institution =  {NOAA Atlas NESDIS 4},
500      year =         1994,
501      OPTkey =       {},
502      OPTtype =      {},
503      OPTnumber =    {},
504      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
505      OPTmonth =     {},
506      OPTnote =      {},
507      OPTannote =    {}
508    }
509    
510    
511  @Article{lew-der:85,  @Article{lew-der:85,
512   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
513   year           = {1985},   year           = {1985},
# Line 336  Line 517 
517   volume         = {37A},   volume         = {37A},
518   pages          = {309--322},   pages          = {309--322},
519                    }                    }
520    
521  @techreport{lon:88,  @techreport{lon:88,
522   author         = {R.B. Long},   author         = {R.B. Long},
523   year           = 1988,   year           = 1988,
# Line 348  Line 529 
529   pages          = {38 pp.},   pages          = {38 pp.},
530   address        = {Delft (NL)},   address        = {Delft (NL)},
531                    }                    }
532    
533    @ARTICLE{losc-heim:06,
534      author =       {Martin Losch and Patrick Heimbach},
535      title =        {Adjoint Sensitivity of an Ocean General Circulation
536                      Model to Bottom Topography},
537      journal =      jpo,
538      year =         2007,
539      volume =       37,
540      doi =          {10.1175/JPO3017.1},
541      number =       2,
542      pages =        {377--393},
543      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
544    }
545    
546    
547  @Article{maro-wun:93,  @Article{maro-wun:93,
548   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
549   year           = 1993,   year           = 1993,
# Line 359  Line 554 
554   volume         = {98, C11},   volume         = {98, C11},
555   pages          = {20,149--20,167},   pages          = {20,149--20,167},
556                    }                    }
557    
558  @Article{maro-eta:99,  @Article{maro-eta:99,
559   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
560                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
561   year           = 1999,   year           = 1999,
562   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 371  Line 566 
566   volume         = {104, C12},   volume         = {104, C12},
567   pages          = {29,529--29,547},   pages          = {29,529--29,547},
568                    }                    }
569    
570  @Article{mars-eta:97a,  @Article{mars-eta:97a,
571   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
572                    A. Adcroft},                    A. Adcroft},
# Line 382  Line 577 
577   volume         = {102, C3},   volume         = {102, C3},
578   pages          = {5,733--5,752},   pages          = {5,733--5,752},
579                    }                    }
580    
581  @Article{mars-eta:97b,  @Article{mars-eta:97b,
582   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
583                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
584   year           = {1997b},   year           = {1997b},
585   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 393  Line 588 
588   volume         = {102, C3},   volume         = {102, C3},
589   pages          = {5,753--5,766},   pages          = {5,753--5,766},
590                    }                    }
591    
592  @Article{mars-sha:98,  @Article{mars-eta:98,
593   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
594   year           = 1998,   year           = 1998,
595   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 597 
597   journal        = jms,   journal        = jms,
598   volume         = {18},   volume         = {18},
599   pages          = {115--134},   pages          = {115--134},
600     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
601     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
602                    }                    }
603    
604  @Article{mcw:96,  @Article{mol:09,
605   author         = {J. McWilliams},   author         = {Andrea Molod},
606   year           = 1996,   year           = 2009,
607   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
608   journal        = arfm,                     algorithm and tests},
609   volume         = {28},   journal        = tel,
610   pages          = {215--248},   volume         = {61A},
611     pages          = {381--393},
612                      }
613    
614    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
615    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
616    %% (Available from Unidata or in PostScript form by anonymous FTP from
617    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
618    %%   a hypertext version of the User's Guide available at
619    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
620    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
621    %%   also available.
622    
623    @incollection{naum-etal:06,
624            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
625            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
626            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
627            Pages = {~},
628            Publisher = {TU Delft},
629            Title = {Adjoint code by source transformation with OpenAD/F},
630            Year = {2006}}
631    
632    @Article{orl:76,
633     author         = {I. Orlanski},
634     year           = 1976,
635     title          = {A simple boundary condition for unbounded hyperbolic flows},
636     journal        = jcp,
637     volume         = {21},
638     pages          = {251--269},
639                    }
640    
641    @Article{pal-rom:97,
642     author         = {T. Paluszkiewicz and R.D. Romea},
643     year           = 1997,
644     title          = {A one-dimensional model for the parameterization
645                      of deep convection in the ocean},
646     journal        = dao,
647     volume         = {26},
648     pages          = {95--130},
649                    }                    }
650    
651    @TechReport{rew:97,
652      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
653      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
654                      An Interface for Data Access, Version 3},
655      institution =  {Unidata Program Center},
656      type =         {Report},
657      address =      {Boulder, Colorado},
658      year =         1997,
659      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
660    }
661    
662    
663  @Article{res-eta:98,  @Article{res-eta:98,
664   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
665   year           = 1998,   year           = 1998,
666   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
667                    data assimilation studies},                    data assimilation studies},
668   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
669   volume         = {19},   volume         = {19},
670   pages          = {1586--1605},   pages          = {1586--1605},
671                    }                    }
672    
673  @Article{ros-eta:93,  @Article{ros-eta:93,
674   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
675   year           = 1993,   year           = 1993,
# Line 431  Line 678 
678   volume         = {45A},   volume         = {45A},
679   pages          = {558--568},   pages          = {558--568},
680                    }                    }
681    
682  @incollection{she-and:89,  @incollection{she-and:89,
683   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
684   year           = 1989,   year           = 1989,
685   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
686                    technique},                    technique},
687   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
688                    Combining data and dynamics},                    Combining data and dynamics},
# Line 446  Line 693 
693   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
694   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
695                    }                    }
696    
697  @techreport{sta-eta:97,  @article{utke-etal:08,
698      Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
699                      and M. Strout and P. Heimbach and C. Hill and
700                      D. Ozyurt and C. Wunsch},
701      Date-Modified ={2007-11-19 10:15:08 -0500},
702      Journal =      {{ACM} Transactions on Mathematical Software},
703      Pages =        {~},
704      Title =        {OpenAD/F: A modular open source tool for automatic
705                      differentiation of Fortran codes},
706      Volume =       {34(4)},
707      Year =         2008
708    }
709    
710    @Article{DaSilva94,
711     author         = {A. da Silva and A. C. Young and S. Levitus},
712     year           = 1994,
713     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
714     journal        = {NOAA Atlas NESDIS},
715     volume         = {6},
716     publisher      = {U.S. Department of Commerce},
717     address        = {Washington, D.C. (USA)},
718     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
719     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
720                      }
721    
722    @techreport{stam-etal:97,
723   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
724                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
725                    C. Hill},                    C. Hill},
726   year           = 1997,   year           = 1997,
727   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
728                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
729                    model},                    model},
730   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 462  Line 734 
734   pages          = {40 pp.},   pages          = {40 pp.},
735   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
736                    }                    }
737    
738  @Article{sta-eta:01,  @article{stam-etal:02,
739   author         = {D. Stammer and C. Wunsch and R. Giering and    author =       {D. Stammer and C. Wunsch and R. Giering and
740                    C. Eckert and P. Heimbach and J. Marotzke and                    C. Eckert and P. Heimbach and J. Marotzke and
741                    A. Adcroft and C. Hill and J. Marshall},                    A. Adcroft and C.N. Hill and J. Marshall},
742   year           = 2001,    title =        {The global ocean circulation and transports during
743   title          = {The global ocean circulation during 1992 -- 1997,                    1992 -- 1997, estimated from ocean observations and
744                    estimated from ocean observations and a general                    a general circulation model.},
745                    circulation model},    journal =      jgr,
746   journal        = jgr,    year =         {2002a},
747   note           = {submitted},    volume =       {107(C9)},
748      pages =        {3118},
749      doi =          {10.1029/2001JC000888},
750    }
751    
752    
753    @Article{Stommel66,
754     author         = {H. Stommel},
755     year           = 1948,
756     title          = {The western intensification of wind-driven ocean currents},
757     journal        = {Trans. Am. Geophys. Union},
758     volume         = {29},
759     pages          = {206},
760                    }                    }
761    
762  @Article{tal-cou:87,  @Article{tal-cou:87,
763   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
764   year           = 1987,   year           = 1987,
765   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
766                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
767                    I: Theory},                    I: Theory},
768   journal        = qjrms,   journal        = qjrms,
769   volume         = {113},   volume         = {113},
770   pages          = {1311--1328},   pages          = {1311--1328},
771                    }                    }
772    
773  @Article{tal:97,  @Article{tal:97,
774   author         = {O. Talagrand},   author         = {O. Talagrand},
775   year           = 1997,   year           = 1997,
# Line 494  Line 778 
778   volume         = {75},   volume         = {75},
779   pages          = {191--209},   pages          = {191--209},
780                    }                    }
781    
782  @book{tar:87,  @book{tar:87,
783   author         = {A. Tarantola},   author         = {A. Tarantola},
784   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
785                    and model parameter estimation},                    and model parameter estimation},
786   year           = 1987,   year           = 1987,
787   publisher      = {Elsevier},   publisher      = {Elsevier},
788   address        = {Amsterdam},   address        = {Amsterdam},
789   pages          = {629 pp.},   pages          = {629 pp.},
790                    }                    }
791                                                                      
792  @techreport{tha:87,  @techreport{tha:87,
793   author         = {W.C. Thacker},   author         = {W.C. Thacker},
794   year           = 1987,   year           = 1987,
# Line 516  Line 800 
800   pages          = {64 pp.},   pages          = {64 pp.},
801   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
802                    }                    }
803    
804  @Article{tha-lon:88,  @Article{tha-lon:88,
805   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
806   year           = 1988,   year           = 1988,
# Line 525  Line 809 
809   volume         = {93, C2},   volume         = {93, C2},
810   pages          = {1,227--1,240},   pages          = {1,227--1,240},
811                    }                    }
812    
813  @Article{tha:88,  @Article{tha:88,
814   author         = {W.C. Thacker},   author         = {W.C. Thacker},
815   year           = 1988,   year           = 1988,
# Line 535  Line 819 
819   volume         = {93},   volume         = {93},
820   pages          = {10,655--10,665},   pages          = {10,655--10,665},
821                    }                    }
822    
823  @Article{tha:89,  @Article{tha:89,
824   author         = {W.C. Thacker},   author         = {W.C. Thacker},
825   year           = 1989,   year           = 1989,
# Line 545  Line 829 
829   volume         = {94, C5},   volume         = {94, C5},
830   pages          = {6,177--6,196},   pages          = {6,177--6,196},
831                    }                    }
832    
833  @Article{tha-rag:94,  @Article{tha-rag:94,
834   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
835   year           = 1994,   year           = 1994,
# Line 555  Line 839 
839   volume         = {99, C5},   volume         = {99, C5},
840   pages          = {10,131--10,141},   pages          = {10,131--10,141},
841                    }                    }
842    
843  @Article{tzi-tha:89,  @Article{tzi-tha:89,
844   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
845   year           = {1989},   year           = {1989},
# Line 565  Line 849 
849   volume         = {19},   volume         = {19},
850   pages          = {1471--1485},   pages          = {1471--1485},
851                    }                    }
852    
853  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
854   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
855                    S. Hwang},                    S. Hwang},
# Line 576  Line 860 
860   volume         = {22},   volume         = {22},
861   pages          = {1434--1457},   pages          = {1434--1457},
862                    }                    }
863    
864  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
865   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
866                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 587  Line 871 
871   volume         = {22},   volume         = {22},
872   pages          = {1458--1485},   pages          = {1458--1485},
873                    }                    }
874    
875  @book{wun:96,  @book{wun:96,
876   author         = {C. Wunsch},   author         = {C. Wunsch},
877   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
878   year           = 1996,   year           = 1996,
879   publisher      = cup,   publisher      = cup,
880   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
881   pages          = {442 pp.},   pages          = {442 pp.},
882                    }                    }
883                                                                      
884  @Article{zha-mar:99,  @Article{zha-mar:99,
885   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
886   year           = 1999,   year           = 1999,
# Line 606  Line 890 
890   volume         = {57},   volume         = {57},
891   pages          = {305--334},   pages          = {305--334},
892                    }                    }
893    
894    
895    @InCollection{hill:95,
896      author =       {Hill, C. and J. Marshall},
897      title =        {Application of a Parallel Navier-Stokes Model to
898                      Ocean Circulation in Parallel Computational Fluid
899                      Dynamics},
900      booktitle =    {Implementations and Results Using Parallel
901                      Computers},
902      pages =        {545-552},
903      publisher =    {Elsevier Science B.V.: New York},
904      year =         1995,
905      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
906    }
907    
908    
909    @Article{marshall:97a,
910      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
911      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
912                     modeling},
913      journal =      jgr,
914      year =         1997,
915      volume =       102,
916      number =       {C3},
917      pages =        {5733-5752},
918      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
919    }
920    
921    @Article{marshall:97b,
922      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
923      title =        {A finite-volume, incompressible Navier Stokes model for
924                      studies of the ocean on parallel computers},
925      journal =      jgr,
926      year =         1997,
927      volume =       102,
928      number =       {C3},
929      pages =        {5753-5766},
930      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
931    }
932    
933    @Article{adcroft:97,
934      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
935      title =        {Representation of topography by shaved cells in a height
936                      coordinate ocean model},
937      journal =      mwr,
938      year =         1997,
939      volume =       125,
940      pages =        {2293-2315},
941      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
942      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
943    }
944    
945    @Article{adcroft:04a,
946      author =       {Adcroft, A. and J.-M. Campin},
947      title =        {Re-scaled height coordinates for accurate representation
948                      of free-surface flows in ocean circulation models},
949      journal =      om,
950      year =         2004,
951      volume =       7,
952      pages =        {269-284},
953      doi   =        {10.1016/j.ocemod.2003.09.003},
954    }
955    
956    @Article{adcroft:04b,
957      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
958      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
959                      on the Expanded Spherical Cube},
960      journal =      mwr,
961      year =         2004,
962      volume =       132,
963      pages =        {2845-2863},
964      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
965      doi     =      {10.1175/MWR2823.1},
966    }
967    
968    @inproceedings{adcroft:04c,
969      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
970                      and P. Heimbach},
971      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
972      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
973                     Recent developments in numerical methods for atmosphere and
974                     ocean modelling},
975      year =         2004,
976      pages =        {139-149},
977      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
978     publisher =     ecmwf
979    }
980    
981    @Article{marshall:04,
982      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
983      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
984      journal =      mwr,
985      year =         2004,
986      volume =       132,
987      pages =        {2882-2894},
988      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
989      doi    =       {10.1175/MWR2835.1},
990    }
991    
992    @Article{visbeck:97,
993      author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
994      title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
995      journal =      jpo,
996      year =         1997,
997      volume =       27,
998      number =       3,
999      pages =        {381-402}
1000    }
1001    
1002    @Article{shaw:98,
1003      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
1004                      and Marshall, J.},
1005      title =        {A comparison of implicitly parallel multi-threaded and
1006                      data-parallel implementations of an ocean model based
1007                      on the Navier-Stokes equations},
1008      journal =      {J. of Parallel and Distributed Computing},
1009      year =         1998,
1010      volume =       48,
1011      number =       1,
1012      pages =        {1-51}
1013    }
1014    
1015    @Article{mjn:99,
1016      author =       {Marshall, J., Jamous, D and J. Nilsson},
1017      title =        {Reconciling `thermodynamic' and `dynamic' methods of
1018                      computation of water-mass transformation rates},
1019      journal =      {DSR},
1020      year =         1999,
1021      volume =       46,
1022      pages =        {545-572}
1023    }
1024    
1025    @Article{ms:99,
1026      author =       {Marshall, J and F. Schott},
1027      title =        {Open ocean deep convection: observations, models and theory},
1028      journal =      {Rev. Geophys.},
1029      year =         1999,
1030      volume =       37,
1031      number =       1,
1032      pages =        {1-64}
1033    }
1034    
1035    @Article{adcroft:99,
1036      author =       {Adcroft, A., Hill C. and J. Marshall},
1037      title =        {A new treatment of the Coriolis terms in C-grid models
1038                      at both high and low resolutions},
1039      journal =      mwr,
1040      year =         1999,
1041      volume =       127,
1042      pages =        {1928-1936},
1043      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1044      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1045    }
1046    
1047    @InProceedings{hill:99,
1048      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1049      title =        {A Strategy for Terascale Climate Modeling},
1050      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1051      year =         1999,
1052      pages = {406-425},
1053      publisher =    {World Scientific},
1054    }
1055    
1056    @Article{wardle:00,
1057      author =       {Wardle R. and Marshall J.},
1058      title =        {Representation of eddies in primitive equation models by a PV flux},
1059      journal =      jpo,
1060      year =         2000,
1061      volume =       30,
1062      number =       10,
1063      pages =        {2481-2503}
1064    }
1065    
1066    @Article{ac:02,
1067      author =       {Adcroft, A. and J.-M. Campin},
1068      title =        {Comparison of finite volume schemes and direct-space-time
1069                      methods for ocean circulation models},
1070      journal =      om,
1071      year =         2002,
1072      note =         {in preparation}
1073    }
1074    
1075    @Article{adcroft:02,
1076      author =       {Adcroft, A., et~al.},
1077      title =        {Energy conversion in discrete numerical models},
1078      journal =      om,
1079      year =         2002,
1080      note =         {in preparation}
1081    }
1082    
1083    @InCollection{arakawa:77,
1084      author =       {Arakawa, A. and Lamb, V.},
1085      title =        {Computational Design of the Basic Dynamical Processes of
1086                      the UCLA General Circulation Model},
1087      booktitle =    {Methods in Computational Physics},
1088      pages =        {174-267},
1089      publisher =    {Academic Press},
1090      year =         1977,
1091      volume =       17
1092    }
1093    
1094    @Article{miller_white:84,
1095      author =       {Miller, M. J. and White, A. A.},
1096      title =        {On the non-hydrostatic equations in pressure
1097                      and sigma coordiantes},
1098      journal =      qjrms,
1099      year =         1984,
1100      volume =       110,
1101      pages =        {515-533}
1102    }
1103    
1104    @Article{white:89,
1105      author =       {White, A. A.},
1106      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1107      journal =      qjrms,
1108      year =         1989,
1109      volume =       115,
1110      pages =        {1243-1251}
1111    }
1112    
1113    @Article{adcroft:98,
1114      author =       {Adcroft, A. and Marshall, D.},
1115      title =        {How slippery are piecewise-constant coastlines in numerical
1116                      ocean models?},
1117      journal =      {Tellus},
1118      year =         1998,
1119      volume =       50,
1120      number =       1,
1121      pages =        {95-108}
1122    }
1123    
1124    @PhdThesis{adcroft:95,
1125      author =       {Adcroft, A.},
1126      title =        {Numerical Algorithms for use in a Dynamical Model of the
1127                      Ocean},
1128      school =       {Imperial College, London},
1129      year =         1995
1130    }
1131    
1132    @Article{griffies:00,
1133      author =       {Griffies, S.,M. and Hallberg, R.,W.},
1134      title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1135                      use in large-scale eddy-permitting ocean models},
1136      journal =      mwr,
1137      year =         2000,
1138      volume =       128,
1139      number =       8,
1140      pages =        {2935-2946}
1141    }
1142    
1143    @Article{wajsowicz:93,
1144      author =       {Wajsowicz, R.},
1145      title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1146                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1147      journal =      jcp,
1148      year =         1993,
1149      volume =       105,
1150      number =       2,
1151      pages =        {333-338}
1152    }
1153    
1154    @Article{campin:02,
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1227     series         = {Lectures in Applied Mathematics},
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1229     pages          = {163-193},
1230     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
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1303      OPTannote =    {}
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1310      institution =  "Unesco",
1311      year =         1983,
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1323      VOLUME      = 28,
1324      PAGES       = "191-217"
1325    }
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1330                     numerical investigations of climate",
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1333      VOLUME      = 6,
1334      PAGES       = "379-389"
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1340      JOURNAL     = jaot,
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1342      VOLUME      = 17,
1343      PAGES       = "525-531"
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1348      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
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1386      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
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1390      PAGES       = "3325--3338"
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1406                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
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1408      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1409      year =         {2005},
1410      OPTnumber =    {122},
1411      address =      {Cambridge, MA},
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1418                      Biogeochemistry Models},
1419      journal =      {Ocean Modeling},
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1431      journal =      {Global Biogeochemical Cycles},
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1433      OPTkey =       {},
1434      volume =       {18},
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1441      title =        {A global wind stress climatology based on ECMWF analyses},
1442      institution =  {NCAR},
1443      year =         {1989},
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1446      number =       {NCAR/TN-338+STR},
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1455      year =         {1992},
1456      OPTkey =       {},
1457      volume =       {97},
1458      OPTnumber =    {},
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1467     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1468     editor       = {Pfafflin and Zeigler},
1469     publisher    = {Gordon and Breach, Scientific Publishers}
1470    }
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1475     title        = {A solar radiation model for use in climate studies.},
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1478     pages        = {762-772}
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1498     number       = {104606-Vol 3},
1499     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1547     pages        = {406-425},
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1577     number       = {104538},
1578     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1586    in Climate Models as a Composite of Independent Vegetation Stands.},
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1588     volume       = {97},
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1665     type         = {NASA Technical Memorandum},
1666     number       = {104606 Volume 10},
1667     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1668     note         = {http://www.gmao.nasa.gov/},
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1761      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1762                      Coordinate z$^\ast$},
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1788      booktitle =    {Climate processes and climate sensitivity},
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1812      booktitle =    {Ice Mechanics},
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1870      title =        {{NASA} Supercomputer Improves Prospects for Ocean
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1895      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
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1906      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
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1915      author =       {Jinlun Zhang and Drew A. Rothrock},
1916      title =        {Modeling Global Sea Ice with a Thickness and
1917                      Enthalpy Distribution Model in Generalized
1918                      Curvilinear Coordinates},
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1929      title =        {A Numerical Model of the {W}eddell {S}ea:
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1931      journal =      jgr,
1932      year =         1999,
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1934      number =       {C10},
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1943      journal =      jgr,
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1975                      of Conservative Boundary Conditions at an Ice-Ocean
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2024                      parameterizations},
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2032    
2033    @Article{losch14:_jfnk,
2034      author =       {Martin Losch and Annika Fuchs and
2035                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
2036      title =        {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
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