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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.47 by mlosch, Mon Mar 31 11:26:49 2014 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5    @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
17  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
18    @string{om      = {Ocean Modelling}}
19  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
20  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
21  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 28  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 39  Line 47 
47   volume         = {3},   volume         = {3},
48   pages          = {625--638},   pages          = {625--638},
49                    }                    }
50    
51  @incollection{bis:94,  @incollection{bis:94,
52   author         = {C.H. Bishof},   author         = {C.H. Bishof},
53   year           = 1994,   year           = 1994,
# Line 52  Line 60 
60   publisher      = {Kluwer},   publisher      = {Kluwer},
61   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
62                    }                    }
63    
64  @techreport{bis-eta:94,  @techreport{bis-eta:94,
65   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
66                    A. Maurer},                    A. Maurer},
# Line 63  Line 71 
71                    Computer Science Division},                    Computer Science Division},
72   type           = {Argonne Preprint},   type           = {Argonne Preprint},
73   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
74   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
75                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @ARTICLE{bryan:84,
80      author = {Kirk Bryan},
81      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
82      journal = jpo,
83      year = {1984},
84      volume = {14},
85      number = {4},
86      pages = {666-673},
87    }
88    
89    @ARTICLE{bugi-hill:06,
90      author = {V. Bugnion and C. Hill},
91      title = {Equilibration mechanisms in an adjoint ocean general
92               circulation model},
93      journal = {Ocean Dynamics},
94      year = {2006},
95      volume = {56},
96      number = {1},
97      pages = {51-61},
98      doi   = {10.1007/s10236-005-0052-z},
99    }
100    
101  @techreport{bis-roh:97,  @techreport{bis-roh:97,
102   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
103   year           = 1997,   year           = 1997,
# Line 77  Line 107 
107                    Computer Science Division},                    Computer Science Division},
108   type           = {Argonne Preprint},   type           = {Argonne Preprint},
109   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
110   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
111                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
112   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
113                    }                    }
114    
115  @Article{cou-tal:87,  @Article{cou-tal:87,
116   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
117   year           = 1987,   year           = 1987,
118   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
119                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
120                    II: Numerical results},                    II: Numerical results},
121   journal        = qjrms,   journal        = qjrms,
122   volume         = {113},   volume         = {113},
123   pages          = {1329--1347},   pages          = {1329--1347},
124                    }                    }
125    
126  @Article{cou-tal:90,  @Article{cou-tal:90,
127   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
128   year           = 1990,   year           = 1990,
# Line 103  Line 133 
133   volume         = {42A},   volume         = {42A},
134   pages          = {531--549},   pages          = {531--549},
135                    }                    }
136    
137  @Article{cou-eta:94,  @Article{cou-eta:94,
138   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
139                    A. Hollingsworth},                    A. Hollingsworth},
# Line 114  Line 144 
144   volume         = {120},   volume         = {120},
145   pages          = {1367--1387},   pages          = {1367--1387},
146                    }                    }
147    
148    @ARTICLE{durr:91,
149      author = {Dale R. Durran},
150      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
151               to Leapfrog Time Differencing},
152      journal = mwr,
153      year = {1991},
154      volume = {119},
155      pages  = {702-720},
156    }
157    
158    
159    @ARTICLE{dutk-etal:06,
160      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
161      title = {Controls on ocean productivity and air-sea carbon flux:
162               An adjoint model sensitivity study},
163      journal = grl,
164      year = {2006},
165      volume = {33},
166      pages  = {L02603},
167      doi    = {10.1029/2005GL024987},
168    }
169    
170  @Article{err:97,  @Article{err:97,
171   author         = {R.M. Errico},   author         = {R.M. Errico},
172   year           = 1997,   year           = 1997,
# Line 123  Line 175 
175   volume         = {78},   volume         = {78},
176   pages          = {2577--2591},   pages          = {2577--2591},
177                    }                    }
178    
179  @Article{far-moo:92,  @Article{far-moo:92,
180   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
181   year           = {1992},   year           = {1992},
# Line 133  Line 185 
185   volume         = {22},   volume         = {22},
186   pages          = {338--349},   pages          = {338--349},
187                    }                    }
188    
189  @Article{far-ioa:96a,  @Article{far-ioa:96a,
190   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
191   year           = {1996a},   year           = {1996a},
# Line 143  Line 195 
195   volume         = {53},   volume         = {53},
196   pages          = {2025--2040},   pages          = {2025--2040},
197                    }                    }
198    
199  @Article{far-ioa:96b,  @Article{far-ioa:96b,
200   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
201   year           = {1996b},   year           = {1996b},
# Line 153  Line 205 
205   volume         = {53},   volume         = {53},
206   pages          = {2041--2053},   pages          = {2041--2053},
207                    }                    }
208    
209  @techreport{fau-pap:98,  @techreport{fau-pap:98,
210   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
211   year           = 1998,   year           = 1998,
# Line 166  Line 218 
218                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
219   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
220                    }                    }
221    
222  @Article{fau:00,  @Article{fau:00,
223   author         = {C. Faure},   author         = {C. Faure},
224   year           = {2000},   year           = {2000},
# Line 174  Line 226 
226   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
227   note           = {in press},   note           = {in press},
228                    }                    }
229    
230    @Article{fer-eta:05,
231     author         = {D. Ferreira and J. Marshall and P. Heimbach},
232     year           = 2005,
233     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
234                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
235     journal        = jpo,
236     volume         = {35},
237     pages          = {1891--1910},
238                      }
239    
240    @Article{gas-eta:90,
241     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
242     year           = 1990,
243     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
244                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
245                       Upper Ocean Study Site},
246     journal        = jgr,
247     volume         = {95 (C9)},
248     pages          = {16,179--16,193},
249                      }
250    
251  @Article{gen-mcw:90,  @Article{gen-mcw:90,
252   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
253   year           = 1990,   year           = 1990,
254   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
255   journal        = jpo,   journal        = jpo,
256   volume         = {20},   volume         = {20},
257   pages          = {150--155},   pages          = {150--155},
258                    }                    }
259    
260  @Article{gen-eta:95,  @Article{gen-eta:95,
261   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
262   year           = 1995,   year           = 1995,
263   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
264   journal        = jpo,   journal        = jpo,
265   volume         = {25},   volume         = {25},
266   pages          = {463--474},   pages          = {463--474},
267                    }                    }
268    
269  @Article{gie-kam:98,  @Article{gie-kam:98,
270   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
271   year           = 1998,   year           = 1998,
# Line 207  Line 278 
278  @techreport{gie:99,  @techreport{gie:99,
279   author         = {R. Giering},   author         = {R. Giering},
280   year           = 1999,   year           = 1999,
281   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
282                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
283   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
284   type           = {Report},   type           = {Report},
# Line 216  Line 287 
287                    02139; USA},                    02139; USA},
288   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
289                    }                    }
290    
291  @incollection{gie:00,  @incollection{gie:00,
292   author         = {R. Giering},   author         = {R. Giering},
293   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 240  Line 311 
311   volume         = {45},   volume         = {45},
312   pages          = {407--435},   pages          = {407--435},
313                    }                    }
314    
315  @book{gil-eta:81,  @book{gil-eta:81,
316   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
317   title          = {Practical optimization},   title          = {Practical optimization},
318   year           = 1981,   year           = 1981,
319   publisher      = {Academic Press},   publisher      = {Academic Press},
320   address        = {London},   address        = {London},
321   pages          = {401 pp.},   pages          = {401 pp.},
322                    }                    }
323                                                                      
324    @incollection{gri:89,
325     author         = {A. Griewank},
326     year           = 1989,
327     title          = {On automatic differentiation},
328     booktitle      = {Mathematical Programming: Recent Developments and
329                      Applications},
330     pages          = {83--108},
331     editor         = {M. Iri and K. Tanabe},
332     publisher      = {Kluwer},
333     address        = {Dordrecht, NL},
334                      }
335    
336    @Article{gri:92,
337      author =       {A.~Griewank},
338      title =        {Achieving logarithmic growth of temporal and spatial
339      complexity in reverse {A}utomatic {D}ifferentiation},
340      journal       = {Optimization Methods and Software},
341      year          = {1992},
342      volume        = {1},
343      pages         = {35--54}
344    }
345    
346  @book{gri:00,  @book{gri:00,
347   author         = {A. Griewank},   author         = {A. Griewank},
348   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 258  Line 351 
351   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
352   volume         = {19},   volume         = {19},
353   publisher      = {SIAM},   publisher      = {SIAM},
354   address        = {Philadelphia},   address        = {Philadelphia},
355   pages          = {369 pp.},   pages          = {369 pp.},
356                    }                    }
357                                                                      
358  @Article{hal-eta:82,  @Article{hal-eta:82,
359   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
360   year           = 1982,   year           = 1982,
# Line 271  Line 364 
364   volume         = {39},   volume         = {39},
365   pages          = {2038--3050},   pages          = {2038--3050},
366                    }                    }
367    
368    @Article{Haney,
369      author =       {R.L. Haney},
370      title =        {Surface thermal boundary conditions for ocean
371                      circulation models},
372      journal =      jpo,
373      year =         1971,
374      volume =       1,
375      pages =        {241--248}
376    }
377    
378    @Article{held-suar:94,
379     author         = {I.M. Held and M.J. Suarez},
380     year           = {1994},
381     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
382     journal        = {Bulletin of the American Meteorological Society},
383     volume         = {75(10)},
384     pages          = {1825-1830}
385    }
386    
387  @Article{hil-eta:01,  @Article{hil-eta:01,
388   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
389                    J. Marshall},                    J. Marshall},
390   year           = {2001},   year           = {2002},
391   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
392                    circulation on carbon sequestration},                    circulation on carbon sequestration},
393   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
394   note           = {submitted},   note           = {submitted},
395                    }                    }
396    
397    @ARTICLE{hib80,
398      author =       {Hibler, III, William D.},
399      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
400      JOURNAL     = mwr,
401      YEAR        = 1980,
402      VOLUME      = 1,
403      PAGES       = "1943-1973"
404    }
405    
406    @Article{Holland75,
407     author         = {W.R. Holland and L. B. Lin},
408     year           = {1975a},
409     title          = {On the origin of mesoscale eddies and their contribution
410                       to the general circulation of the ocean. I. A preliminary
411                       numerical experiment},
412     journal        = jpo,
413     volume         = {5},
414     pages          = {642-657}
415                      }
416    
417    @Article{hol-lin:75b,
418     author         = {W.R. Holland and L. B. Lin},
419     year           = {1975b},
420     title          = {On the origin of mesoscale eddies and their contribution
421                       to the general circulation of the ocean. II. A parameter
422                       study},
423     journal        = jpo,
424     volume         = {5},
425     pages          = {658-669}
426                      }
427    
428    @Article{jam-oze:86,
429     author         = {B.M. Jamart and J. Ozer},
430     year           = {1986},
431     title          = {Numerical boundary layers and spurious residual flows},
432     journal        = jgr,
433     volume         = {91},
434     pages          = {10,621-10,631}
435                      }
436    
437  @book{kas-eta:00,  @book{kas-eta:00,
438   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
439                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 297  Line 449 
449  @Article{lar-eta:94,  @Article{lar-eta:94,
450   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
451   year           = 1994,   year           = 1994,
452   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
453   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
454   volume         = {32},   volume         = {32},
455   pages          = {363--403},   pages          = {363--403},
456                    }                    }
457    
458  @Article{lar-eta:97,  @Article{lar-eta:97,
459   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
460                    and J.C. McWilliams},                    and J. C. McWilliams},
461   year           = 1997,   year           = 1997,
462   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
463                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
464   journal        = jpo,   journal        = jpo,
465   volume         = {27},   volume         = {27},
466     number         = 11,
467   pages          = {2418--2447},   pages          = {2418--2447},
468                    }                    }
469    
470  @Article{led-tal:86,  @Article{led-tal:86,
471   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
472   year           = 1986,   year           = 1986,
# Line 326  Line 477 
477   volume         = {38A},   volume         = {38A},
478   pages          = {97--110},   pages          = {97--110},
479                    }                    }
480    
481    @TechReport{lev:94a,
482      author =       {S. Levitus and T.P.Boyer},
483      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
484      institution =  {NOAA Atlas NESDIS 3},
485      year =         1994,
486      OPTkey =       {},
487      OPTtype =      {},
488      OPTnumber =    {},
489      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
490      OPTmonth =     {},
491      OPTnote =      {},
492      OPTannote =    {}
493    }
494    
495    
496    @TechReport{Levitus94,
497      author =       {S. Levitus and T.P.Boyer},
498      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
499      institution =  {NOAA Atlas NESDIS 4},
500      year =         1994,
501      OPTkey =       {},
502      OPTtype =      {},
503      OPTnumber =    {},
504      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
505      OPTmonth =     {},
506      OPTnote =      {},
507      OPTannote =    {}
508    }
509    
510    
511  @Article{lew-der:85,  @Article{lew-der:85,
512   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
513   year           = {1985},   year           = {1985},
# Line 336  Line 517 
517   volume         = {37A},   volume         = {37A},
518   pages          = {309--322},   pages          = {309--322},
519                    }                    }
520    
521  @techreport{lon:88,  @techreport{lon:88,
522   author         = {R.B. Long},   author         = {R.B. Long},
523   year           = 1988,   year           = 1988,
# Line 348  Line 529 
529   pages          = {38 pp.},   pages          = {38 pp.},
530   address        = {Delft (NL)},   address        = {Delft (NL)},
531                    }                    }
532    
533    @ARTICLE{losc-heim:06,
534      author =       {Martin Losch and Patrick Heimbach},
535      title =        {Adjoint Sensitivity of an Ocean General Circulation
536                      Model to Bottom Topography},
537      journal =      jpo,
538      year =         2007,
539      volume =       37,
540      doi =          {10.1175/JPO3017.1},
541      number =       2,
542      pages =        {377--393},
543      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
544    }
545    
546    
547  @Article{maro-wun:93,  @Article{maro-wun:93,
548   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
549   year           = 1993,   year           = 1993,
# Line 359  Line 554 
554   volume         = {98, C11},   volume         = {98, C11},
555   pages          = {20,149--20,167},   pages          = {20,149--20,167},
556                    }                    }
557    
558  @Article{maro-eta:99,  @Article{maro-eta:99,
559   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
560                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
561   year           = 1999,   year           = 1999,
562   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 371  Line 566 
566   volume         = {104, C12},   volume         = {104, C12},
567   pages          = {29,529--29,547},   pages          = {29,529--29,547},
568                    }                    }
569    
570  @Article{mars-eta:97a,  @Article{mars-eta:97a,
571   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
572                    A. Adcroft},                    A. Adcroft},
# Line 382  Line 577 
577   volume         = {102, C3},   volume         = {102, C3},
578   pages          = {5,733--5,752},   pages          = {5,733--5,752},
579                    }                    }
580    
581  @Article{mars-eta:97b,  @Article{mars-eta:97b,
582   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
583                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
584   year           = {1997b},   year           = {1997b},
585   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 393  Line 588 
588   volume         = {102, C3},   volume         = {102, C3},
589   pages          = {5,753--5,766},   pages          = {5,753--5,766},
590                    }                    }
591    
592  @Article{mars-sha:98,  @Article{mars-eta:98,
593   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
594   year           = 1998,   year           = 1998,
595   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 597 
597   journal        = jms,   journal        = jms,
598   volume         = {18},   volume         = {18},
599   pages          = {115--134},   pages          = {115--134},
600     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
601     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
602                    }                    }
603    
604  @Article{mcw:96,  @Article{mol:09,
605   author         = {J. McWilliams},   author         = {Andrea Molod},
606   year           = 1996,   year           = 2009,
607   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
608   journal        = arfm,                     algorithm and tests},
609   volume         = {28},   journal        = tel,
610   pages          = {215--248},   volume         = {61A},
611     pages          = {381--393},
612                    }                    }
613    
614    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
615    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
616    %% (Available from Unidata or in PostScript form by anonymous FTP from
617    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
618    %%   a hypertext version of the User's Guide available at
619    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
620    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
621    %%   also available.
622    
623    @incollection{naum-etal:06,
624            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
625            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
626            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
627            Pages = {~},
628            Publisher = {TU Delft},
629            Title = {Adjoint code by source transformation with OpenAD/F},
630            Year = {2006}}
631    
632    @Article{orl:76,
633     author         = {I. Orlanski},
634     year           = 1976,
635     title          = {A simple boundary condition for unbounded hyperbolic flows},
636     journal        = jcp,
637     volume         = {21},
638     pages          = {251--269},
639                    }
640    
641    @Article{pal-rom:97,
642     author         = {T. Paluszkiewicz and R.D. Romea},
643     year           = 1997,
644     title          = {A one-dimensional model for the parameterization
645                      of deep convection in the ocean},
646     journal        = dao,
647     volume         = {26},
648     pages          = {95--130},
649                      }
650    
651    @TechReport{rew:97,
652      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
653      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
654                      An Interface for Data Access, Version 3},
655      institution =  {Unidata Program Center},
656      type =         {Report},
657      address =      {Boulder, Colorado},
658      year =         1997,
659      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
660    }
661    
662    
663  @Article{res-eta:98,  @Article{res-eta:98,
664   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
665   year           = 1998,   year           = 1998,
666   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
667                    data assimilation studies},                    data assimilation studies},
668   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
669   volume         = {19},   volume         = {19},
670   pages          = {1586--1605},   pages          = {1586--1605},
671                    }                    }
672    
673  @Article{ros-eta:93,  @Article{ros-eta:93,
674   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
675   year           = 1993,   year           = 1993,
# Line 431  Line 678 
678   volume         = {45A},   volume         = {45A},
679   pages          = {558--568},   pages          = {558--568},
680                    }                    }
681    
682  @incollection{she-and:89,  @incollection{she-and:89,
683   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
684   year           = 1989,   year           = 1989,
685   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
686                    technique},                    technique},
687   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
688                    Combining data and dynamics},                    Combining data and dynamics},
# Line 446  Line 693 
693   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
694   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
695                    }                    }
696    
697  @techreport{sta-eta:97,  @article{utke-etal:08,
698            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
699            Date-Modified = {2007-11-19 10:15:08 -0500},
700            Journal = {{ACM} Transactions on Mathematical Software},
701            Pages = {~},
702            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
703            Volume = {34(4)},
704            Year = {2008}}
705    
706    @Article{DaSilva94,
707     author         = {A. da Silva and A. C. Young and S. Levitus},
708     year           = 1994,
709     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
710     journal        = {NOAA Atlas NESDIS},
711     volume         = {6},
712     publisher      = {U.S. Department of Commerce},
713     address        = {Washington, D.C. (USA)},
714     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
715     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
716                      }
717    
718    @techreport{stam-etal:97,
719   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
720                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
721                    C. Hill},                    C. Hill},
722   year           = 1997,   year           = 1997,
723   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
724                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
725                    model},                    model},
726   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 462  Line 730 
730   pages          = {40 pp.},   pages          = {40 pp.},
731   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
732                    }                    }
733    
734  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
735   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
736                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
737                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
738   year           = 2001,    year = {2002a},
739   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
740                    estimated from ocean observations and a general    pages = {3118},
741                    circulation model},    doi   = {10.1029/2001JC000888},
742   journal        = jgr,  }
743   note           = {submitted},  
744    
745    @Article{Stommel66,
746     author         = {H. Stommel},
747     year           = 1948,
748     title          = {The western intensification of wind-driven ocean currents},
749     journal        = {Trans. Am. Geophys. Union},
750     volume         = {29},
751     pages          = {206},
752                    }                    }
753    
754  @Article{tal-cou:87,  @Article{tal-cou:87,
755   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
756   year           = 1987,   year           = 1987,
757   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
758                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
759                    I: Theory},                    I: Theory},
760   journal        = qjrms,   journal        = qjrms,
761   volume         = {113},   volume         = {113},
762   pages          = {1311--1328},   pages          = {1311--1328},
763                    }                    }
764    
765  @Article{tal:97,  @Article{tal:97,
766   author         = {O. Talagrand},   author         = {O. Talagrand},
767   year           = 1997,   year           = 1997,
# Line 494  Line 770 
770   volume         = {75},   volume         = {75},
771   pages          = {191--209},   pages          = {191--209},
772                    }                    }
773    
774  @book{tar:87,  @book{tar:87,
775   author         = {A. Tarantola},   author         = {A. Tarantola},
776   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
777                    and model parameter estimation},                    and model parameter estimation},
778   year           = 1987,   year           = 1987,
779   publisher      = {Elsevier},   publisher      = {Elsevier},
780   address        = {Amsterdam},   address        = {Amsterdam},
781   pages          = {629 pp.},   pages          = {629 pp.},
782                    }                    }
783                                                                      
784  @techreport{tha:87,  @techreport{tha:87,
785   author         = {W.C. Thacker},   author         = {W.C. Thacker},
786   year           = 1987,   year           = 1987,
# Line 516  Line 792 
792   pages          = {64 pp.},   pages          = {64 pp.},
793   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
794                    }                    }
795    
796  @Article{tha-lon:88,  @Article{tha-lon:88,
797   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
798   year           = 1988,   year           = 1988,
# Line 525  Line 801 
801   volume         = {93, C2},   volume         = {93, C2},
802   pages          = {1,227--1,240},   pages          = {1,227--1,240},
803                    }                    }
804    
805  @Article{tha:88,  @Article{tha:88,
806   author         = {W.C. Thacker},   author         = {W.C. Thacker},
807   year           = 1988,   year           = 1988,
# Line 535  Line 811 
811   volume         = {93},   volume         = {93},
812   pages          = {10,655--10,665},   pages          = {10,655--10,665},
813                    }                    }
814    
815  @Article{tha:89,  @Article{tha:89,
816   author         = {W.C. Thacker},   author         = {W.C. Thacker},
817   year           = 1989,   year           = 1989,
# Line 545  Line 821 
821   volume         = {94, C5},   volume         = {94, C5},
822   pages          = {6,177--6,196},   pages          = {6,177--6,196},
823                    }                    }
824    
825  @Article{tha-rag:94,  @Article{tha-rag:94,
826   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
827   year           = 1994,   year           = 1994,
# Line 555  Line 831 
831   volume         = {99, C5},   volume         = {99, C5},
832   pages          = {10,131--10,141},   pages          = {10,131--10,141},
833                    }                    }
834    
835  @Article{tzi-tha:89,  @Article{tzi-tha:89,
836   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
837   year           = {1989},   year           = {1989},
# Line 565  Line 841 
841   volume         = {19},   volume         = {19},
842   pages          = {1471--1485},   pages          = {1471--1485},
843                    }                    }
844    
845  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
846   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
847                    S. Hwang},                    S. Hwang},
# Line 576  Line 852 
852   volume         = {22},   volume         = {22},
853   pages          = {1434--1457},   pages          = {1434--1457},
854                    }                    }
855    
856  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
857   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
858                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 587  Line 863 
863   volume         = {22},   volume         = {22},
864   pages          = {1458--1485},   pages          = {1458--1485},
865                    }                    }
866    
867  @book{wun:96,  @book{wun:96,
868   author         = {C. Wunsch},   author         = {C. Wunsch},
869   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
870   year           = 1996,   year           = 1996,
871   publisher      = cup,   publisher      = cup,
872   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
873   pages          = {442 pp.},   pages          = {442 pp.},
874                    }                    }
875                                                                      
876  @Article{zha-mar:99,  @Article{zha-mar:99,
877   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
878   year           = 1999,   year           = 1999,
# Line 606  Line 882 
882   volume         = {57},   volume         = {57},
883   pages          = {305--334},   pages          = {305--334},
884                    }                    }
885    
886    
887    @InCollection{hill:95,
888      author =       {Hill, C. and J. Marshall},
889      title =        {Application of a Parallel Navier-Stokes Model to
890                      Ocean Circulation in Parallel Computational Fluid
891                      Dynamics},
892      booktitle =    {Implementations and Results Using Parallel
893                      Computers},
894      pages =        {545-552},
895      publisher =    {Elsevier Science B.V.: New York},
896      year =         1995,
897      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
898    }
899    
900    
901    @Article{marshall:97a,
902      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
903      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
904                     modeling},
905      journal =      jgr,
906      year =         1997,
907      volume =       102,
908      number =       {C3},
909      pages =        {5733-5752},
910      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
911    }
912    
913    @Article{marshall:97b,
914      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
915      title =        {A finite-volume, incompressible Navier Stokes model for
916                      studies of the ocean on parallel computers},
917      journal =      jgr,
918      year =         1997,
919      volume =       102,
920      number =       {C3},
921      pages =        {5753-5766},
922      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
923    }
924    
925    @Article{adcroft:97,
926      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
927      title =        {Representation of topography by shaved cells in a height
928                      coordinate ocean model},
929      journal =      mwr,
930      year =         1997,
931      volume =       125,
932      pages =        {2293-2315},
933      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
934      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
935    }
936    
937    @Article{adcroft:04a,
938      author =       {Adcroft, A. and J.-M. Campin},
939      title =        {Re-scaled height coordinates for accurate representation
940                      of free-surface flows in ocean circulation models},
941      journal =      om,
942      year =         2004,
943      volume =       7,
944      pages =        {269-284},
945      doi   =        {10.1016/j.ocemod.2003.09.003},
946    }
947    
948    @Article{adcroft:04b,
949      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
950      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
951                      on the Expanded Spherical Cube},
952      journal =      mwr,
953      year =         2004,
954      volume =       132,
955      pages =        {2845-2863},
956      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
957      doi     =      {10.1175/MWR2823.1},
958    }
959    
960    @inproceedings{adcroft:04c,
961      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
962                      and P. Heimbach},
963      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
964      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
965                     Recent developments in numerical methods for atmosphere and
966                     ocean modelling},
967      year =         2004,
968      pages =        {139-149},
969      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
970     publisher =     ecmwf
971    }
972    
973    @Article{marshall:04,
974      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
975      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
976      journal =      mwr,
977      year =         2004,
978      volume =       132,
979      pages =        {2882-2894},
980      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
981      doi    =       {10.1175/MWR2835.1},
982    }
983    
984    @Article{visbeck:97,
985      author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
986      title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
987      journal =      jpo,
988      year =         1997,
989      volume =       27,
990      number =       3,
991      pages =        {381-402}
992    }
993    
994    @Article{shaw:98,
995      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
996                      and Marshall, J.},
997      title =        {A comparison of implicitly parallel multi-threaded and
998                      data-parallel implementations of an ocean model based
999                      on the Navier-Stokes equations},
1000      journal =      {J. of Parallel and Distributed Computing},
1001      year =         1998,
1002      volume =       48,
1003      number =       1,
1004      pages =        {1-51}
1005    }
1006    
1007    @Article{mjn:99,
1008      author =       {Marshall, J., Jamous, D and J. Nilsson},
1009      title =        {Reconciling `thermodynamic' and `dynamic' methods of
1010                      computation of water-mass transformation rates},
1011      journal =      {DSR},
1012      year =         1999,
1013      volume =       46,
1014      pages =        {545-572}
1015    }
1016    
1017    @Article{ms:99,
1018      author =       {Marshall, J and F. Schott},
1019      title =        {Open ocean deep convection: observations, models and theory},
1020      journal =      {Rev. Geophys.},
1021      year =         1999,
1022      volume =       37,
1023      number =       1,
1024      pages =        {1-64}
1025    }
1026    
1027    @Article{adcroft:99,
1028      author =       {Adcroft, A., Hill C. and J. Marshall},
1029      title =        {A new treatment of the Coriolis terms in C-grid models
1030                      at both high and low resolutions},
1031      journal =      mwr,
1032      year =         1999,
1033      volume =       127,
1034      pages =        {1928-1936},
1035      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1036      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1037    }
1038    
1039    @InProceedings{hill:99,
1040      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1041      title =        {A Strategy for Terascale Climate Modeling},
1042      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1043      year =         1999,
1044      pages = {406-425},
1045      publisher =    {World Scientific},
1046    }
1047    
1048    @Article{wardle:00,
1049      author =       {Wardle R. and Marshall J.},
1050      title =        {Representation of eddies in primitive equation models by a PV flux},
1051      journal =      jpo,
1052      year =         2000,
1053      volume =       30,
1054      number =       10,
1055      pages =        {2481-2503}
1056    }
1057    
1058    @Article{ac:02,
1059      author =       {Adcroft, A. and J.-M. Campin},
1060      title =        {Comparison of finite volume schemes and direct-space-time
1061                      methods for ocean circulation models},
1062      journal =      om,
1063      year =         2002,
1064      note =         {in preparation}
1065    }
1066    
1067    @Article{adcroft:02,
1068      author =       {Adcroft, A., et~al.},
1069      title =        {Energy conversion in discrete numerical models},
1070      journal =      om,
1071      year =         2002,
1072      note =         {in preparation}
1073    }
1074    
1075    @InCollection{arakawa:77,
1076      author =       {Arakawa, A. and Lamb, V.},
1077      title =        {Computational Design of the Basic Dynamical Processes of
1078                      the UCLA General Circulation Model},
1079      booktitle =    {Methods in Computational Physics},
1080      pages =        {174-267},
1081      publisher =    {Academic Press},
1082      year =         1977,
1083      volume =       17
1084    }
1085    
1086    @Article{miller_white:84,
1087      author =       {Miller, M. J. and White, A. A.},
1088      title =        {On the non-hydrostatic equations in pressure
1089                      and sigma coordiantes},
1090      journal =      qjrms,
1091      year =         1984,
1092      volume =       110,
1093      pages =        {515-533}
1094    }
1095    
1096    @Article{white:89,
1097      author =       {White, A. A.},
1098      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1099      journal =      qjrms,
1100      year =         1989,
1101      volume =       115,
1102      pages =        {1243-1251}
1103    }
1104    
1105    @Article{adcroft:98,
1106      author =       {Adcroft, A. and Marshall, D.},
1107      title =        {How slippery are piecewise-constant coastlines in numerical
1108                      ocean models?},
1109      journal =      {Tellus},
1110      year =         1998,
1111      volume =       50,
1112      number =       1,
1113      pages =        {95-108}
1114    }
1115    
1116    @PhdThesis{adcroft:95,
1117      author =       {Adcroft, A.},
1118      title =        {Numerical Algorithms for use in a Dynamical Model of the
1119                      Ocean},
1120      school =       {Imperial College, London},
1121      year =         1995
1122    }
1123    
1124    @Article{griffies:00,
1125      author =       {Griffies, S.,M. and Hallberg, R.,W.},
1126      title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1127                      use in large-scale eddy-permitting ocean models},
1128      journal =      mwr,
1129      year =         2000,
1130      volume =       128,
1131      number =       8,
1132      pages =        {2935-2946}
1133    }
1134    
1135    @Article{wajsowicz:93,
1136      author =       {Wajsowicz, R.},
1137      title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1138                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1139      journal =      jcp,
1140      year =         1993,
1141      volume =       105,
1142      number =       2,
1143      pages =        {333-338}
1144    }
1145    
1146    @Article{campin:02,
1147      author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1148      title =        {Conservation of properties in a free-surface model},
1149      journal =      om,
1150      year =         2004,
1151      volume =       6,
1152      pages =        {221-244}
1153    }
1154    
1155    @Article{Cox87,
1156      author =       {M. D. Cox},
1157      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1158      journal =      {Ocean modelling},
1159      year =         1987,
1160      volume =       74,
1161      pages =        {1-5 (Unpublished manuscript)}
1162    }
1163    
1164    @Article{gretal:98,
1165      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1166      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1167      journal =      jpo,
1168      year =         1998,
1169      volume =       28,
1170      pages =        {805-830}
1171    }
1172    
1173    @ARTICLE{gr:98,
1174      author =       {S. M. Griffies},
1175      title =        {The {Gent-McWilliams} Skew Flux},
1176      journal =      jpo,
1177      year =         1998,
1178      volume =       28,
1179      pages =        {831-841}
1180    }
1181    
1182    
1183    @Article{gkw:91,
1184      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1185      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1186      journal =      climd,
1187      year =         1991,
1188      volume =       5,
1189      number =       4,
1190      pages =        {211-226},
1191      doi   =        {10.1007/BF00210006}
1192    }
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1218     booktitle      = {Large-Scale Computations in Fluid Mechanics},
1219     series         = {Lectures in Applied Mathematics},
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1221     pages          = {163-193},
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1295      OPTannote =    {}
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1300      title =        "Algorithms for Computation of Fundamental Properties
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1302      institution =  "Unesco",
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1304      type =         "Unesco Technical Papers in Marine Science",
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1315      VOLUME      = 28,
1316      PAGES       = "191-217"
1317    }
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1322                     numerical investigations of climate",
1323      JOURNAL     = jpo,
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1325      VOLUME      = 6,
1326      PAGES       = "379-389"
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1334      VOLUME      = 17,
1335      PAGES       = "525-531"
1336    }
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1340      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1341      JOURNAL     = jpo,
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1349      TITLE       = "Modeling pack ice as a cavitating fluid",
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1353      PAGES       = "626-651"
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1359      JOURNAL     = jpo,
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1362      PAGES       = "1849--1867"
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1372      pages =        {18--38},
1373      doi =          {10.1006/jcph.2001.6710}
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1378      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
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1382      PAGES       = "3325--3338"
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1397      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1398                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
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1401      year =         {2005},
1402      OPTnumber =    {122},
1403      address =      {Cambridge, MA},
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1405    }
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1409      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1410                      Biogeochemistry Models},
1411      journal =      {Ocean Modeling},
1412      year =         {{in press}},
1413      OPTkey =       {},
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1423      journal =      {Global Biogeochemical Cycles},
1424      year =         {2004},
1425      OPTkey =       {},
1426      volume =       {18},
1427      number =       {doi:10.1029/2003GB002179},
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1429    }
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1433      title =        {A global wind stress climatology based on ECMWF analyses},
1434      institution =  {NCAR},
1435      year =         {1989},
1436      OPTkey =       {},
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1438      number =       {NCAR/TN-338+STR},
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1447      year =         {1992},
1448      OPTkey =       {},
1449      volume =       {97},
1450      OPTnumber =    {},
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1461     publisher    = {Gordon and Breach, Scientific Publishers}
1462    }
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1467     title        = {A solar radiation model for use in climate studies.},
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1470     pages        = {762-772}
1471    }
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1489     type         = {NASA Technical Memorandum},
1490     number       = {104606-Vol 3},
1491     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1536     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
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1539     pages        = {406-425},
1540     publisher    = {American Meteorological Society}
1541    }
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1568     type         = {NASA Technical Memorandum},
1569     number       = {104538},
1570     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1572    }
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1580     volume       = {97},
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1646     journal      = mwr,
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1654     title        = {  Dynamical aspects of climate simulations Using the GEOS
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1656     institution  = {National Aeronautics and Space Administration},
1657     type         = {NASA Technical Memorandum},
1658     number       = {104606 Volume 10},
1659     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1660     note         = {http://www.gmao.nasa.gov/},
1661    }
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1668     journal      = jfm,
1669     volume       = {62},
1670     pages        = {601-623}
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1675     year         = {1977},
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1677    atmospheric boundary layer.},
1678     journal      = {Atmos. Environ.},
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1685     year         = {1995},
1686     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1687     journal      = qjrms,
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1700     journal        = qjrms,
1701     volume         = {125},
1702     pages          = {391-423}
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1719     journal        = {Climate Dyn.},
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1738     journal        = mwr,
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1745      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
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1750    @Article{cam08,
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1753      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1754                      Coordinate z$^\ast$},
1755      journal =      om,
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1765                      Stephen F. Ackley},
1766      title =        {Large-Scale Sea Ice Drift and Deformation:
1767                      {C}omparison between Models and Observations in the
1768                      Western {W}eddell {S}ea during 1992},
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1778      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1779                      increases},
1780      booktitle =    {Climate processes and climate sensitivity},
1781      pages =        {238--253},
1782      publisher =    {AGU},
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1784      editor =       {J. E. Hansen and T. Takahashi},
1785      volume =       29,
1786      series =       {Geophysical Monograph},
1787      address =      {Washington, D.C.}
1788    }
1789    
1790    @Article{hibler87,
1791      author =       {Hibler, III, William D. and Kirk Bryan},
1792      title =        {A Diagnostic Ice-Ocean Model},
1793      journal =      jpo,
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1795      volume =       17,
1796      number =       7,
1797      pages =        {987--1015}
1798    }
1799    
1800    @InCollection{hibler95,
1801      author =       {Hibler, III, William D. and Chi F. Ip},
1802      title =        {The effect of sea ice rheology on {A}rcitc buoy
1803                      drift},
1804      booktitle =    {Ice Mechanics},
1805      pages =        {255--264},
1806      publisher =    {Am. Soc. of Mech. Eng.},
1807      year =         1995,
1808      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1809      volume =       204,
1810      series =       {AMD},
1811      address =      {New York}
1812    }
1813    
1814    @Article{hibler97,
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1816      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
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1818      journal =      angl,
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1826      title =        {Method of Lines and Direct Discretization: a
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1834    }
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1836    @Article{leppaeranta83,
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1838      title =        {A Growth Model for Black Ice, Snow Ican and Snow
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1840      journal =      {Nordic Hydrology},
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1848      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1849                      Variation for Future Studies of Climate Sensitivity},
1850      journal =      dao,
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1857      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1858                      J.-M. Campin and B. Cheng and B. Ciotti and
1859                      I. Fukumori and A. Koehl and P. Heimbach and
1860                      C. Henze and T. Lee and D. Stammer and J. Taft and
1861                      J. Zhang},
1862      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1863                      Climate Research},
1864      journal =      eos,
1865      year =         2005,
1866      volume =       86,
1867      number =       9,
1868      pages =        {89, 95--96}
1869    }
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1873      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1874      journal =      jgr,
1875      year =         1979,
1876      month =        jan,
1877      volume =       84,
1878      number =       {C1},
1879      pages =        {311--337},
1880      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1881      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1882                      System}
1883    }
1884    
1885    @Article{semtner84,
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1887      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1888                      Ice in Studies of Climatic Change},
1889      journal =      cch,
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1898      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
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1905    
1906    @Article{zhang03,
1907      author =       {Jinlun Zhang and Drew A. Rothrock},
1908      title =        {Modeling Global Sea Ice with a Thickness and
1909                      Enthalpy Distribution Model in Generalized
1910                      Curvilinear Coordinates},
1911      journal =      mwr,
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1916    }
1917    
1918    @Article{beckmann99,
1919      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1920                      Timmermann},
1921      title =        {A Numerical Model of the {W}eddell {S}ea:
1922                      Large-Scale Circulation and Water Mass Distribution},
1923      journal =      jgr,
1924      year =         1999,
1925      volume =       104,
1926      number =       {C10},
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1929    
1930    @Article{grosfeld97,
1931      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1932                      Determann},
1933      title =        {Thermohaline Circulation and Interaction between Ice
1934                      Shelf Cavities and the Adjacent Open Water},
1935      journal =      jgr,
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1941    
1942    @Article{hellmer89,
1943      author =       {Hartmut H. Hellmer and Dirk J. Olbers},
1944      title =        {A Two-Dimensional Model of the Thermohaline
1945                      Circulation Under an Ice Shelf},
1946      journal =      {Antarct. Sci.},
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1948      volume =       1,
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1951    
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1954      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
1955                      Base of an Ice Shelf},
1956      journal =      jpo,
1957      year =         1999,
1958      volume =       29,
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1963    @Article{jenkins01,
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1965                      M. Holland},
1966      title =        {The Role of Meltwater Advection in the Formulation
1967                      of Conservative Boundary Conditions at an Ice-Ocean
1968                      Interface},
1969      journal =      jpo,
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1976      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
1977                      General Circulation Model},
1978      journal =      jgr,
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1984    
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1987                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
1988      title =        {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
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1990      journal =      jcp,
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2000      title =        {Numerical Convergence of Viscous-Plastic Sea Ice
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2011                      Thomas and David Huard and Jean-Pierre Auclair},
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2014                      {J}acobian-Free {N}ewton-{K}rylov Method},
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2084    
2085    @Article{kalnay96,
2086      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
2087                      W. Collins and D. Deaven and L. Gandin and
2088                      M. Iredell and S. Saha and G. White and J. Woollen
2089                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2090                      W. Higgins and J. Janowiak and K. C. Mo and
2091                      C. Ropelewski and J. Wang and A. Leetmaa and
2092                      R. Reynolds and R. Jenne and D. Joseph},
2093      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2094      journal =      bams,
2095      year =         1996,
2096      volume =       77,
2097      pages =        {437--471}
2098    }

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