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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.46 by jmc, Wed May 15 22:49:36 2013 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5    @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
17  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
18    @string{om      = {Ocean Modelling}}
19  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
20  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
21  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 28  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 39  Line 46 
46   volume         = {3},   volume         = {3},
47   pages          = {625--638},   pages          = {625--638},
48                    }                    }
49    
50  @incollection{bis:94,  @incollection{bis:94,
51   author         = {C.H. Bishof},   author         = {C.H. Bishof},
52   year           = 1994,   year           = 1994,
# Line 52  Line 59 
59   publisher      = {Kluwer},   publisher      = {Kluwer},
60   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
61                    }                    }
62    
63  @techreport{bis-eta:94,  @techreport{bis-eta:94,
64   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
65                    A. Maurer},                    A. Maurer},
# Line 63  Line 70 
70                    Computer Science Division},                    Computer Science Division},
71   type           = {Argonne Preprint},   type           = {Argonne Preprint},
72   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
73   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bryan:84,
79      author = {Kirk Bryan},
80      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
81      journal = jpo,
82      year = {1984},
83      volume = {14},
84      number = {4},
85      pages = {666-673},
86    }
87    
88    @ARTICLE{bugi-hill:06,
89      author = {V. Bugnion and C. Hill},
90      title = {Equilibration mechanisms in an adjoint ocean general
91               circulation model},
92      journal = {Ocean Dynamics},
93      year = {2006},
94      volume = {56},
95      number = {1},
96      pages = {51-61},
97      doi   = {10.1007/s10236-005-0052-z},
98    }
99    
100  @techreport{bis-roh:97,  @techreport{bis-roh:97,
101   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
102   year           = 1997,   year           = 1997,
# Line 77  Line 106 
106                    Computer Science Division},                    Computer Science Division},
107   type           = {Argonne Preprint},   type           = {Argonne Preprint},
108   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
109   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
110                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
111   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
112                    }                    }
113    
114  @Article{cou-tal:87,  @Article{cou-tal:87,
115   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
116   year           = 1987,   year           = 1987,
117   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
118                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
119                    II: Numerical results},                    II: Numerical results},
120   journal        = qjrms,   journal        = qjrms,
121   volume         = {113},   volume         = {113},
122   pages          = {1329--1347},   pages          = {1329--1347},
123                    }                    }
124    
125  @Article{cou-tal:90,  @Article{cou-tal:90,
126   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
127   year           = 1990,   year           = 1990,
# Line 103  Line 132 
132   volume         = {42A},   volume         = {42A},
133   pages          = {531--549},   pages          = {531--549},
134                    }                    }
135    
136  @Article{cou-eta:94,  @Article{cou-eta:94,
137   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
138                    A. Hollingsworth},                    A. Hollingsworth},
# Line 114  Line 143 
143   volume         = {120},   volume         = {120},
144   pages          = {1367--1387},   pages          = {1367--1387},
145                    }                    }
146    
147    @ARTICLE{durr:91,
148      author = {Dale R. Durran},
149      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
150               to Leapfrog Time Differencing},
151      journal = mwr,
152      year = {1991},
153      volume = {119},
154      pages  = {702-720},
155    }
156    
157    
158    @ARTICLE{dutk-etal:06,
159      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
160      title = {Controls on ocean productivity and air-sea carbon flux:
161               An adjoint model sensitivity study},
162      journal = grl,
163      year = {2006},
164      volume = {33},
165      pages  = {L02603},
166      doi    = {10.1029/2005GL024987},
167    }
168    
169  @Article{err:97,  @Article{err:97,
170   author         = {R.M. Errico},   author         = {R.M. Errico},
171   year           = 1997,   year           = 1997,
# Line 123  Line 174 
174   volume         = {78},   volume         = {78},
175   pages          = {2577--2591},   pages          = {2577--2591},
176                    }                    }
177    
178  @Article{far-moo:92,  @Article{far-moo:92,
179   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
180   year           = {1992},   year           = {1992},
# Line 133  Line 184 
184   volume         = {22},   volume         = {22},
185   pages          = {338--349},   pages          = {338--349},
186                    }                    }
187    
188  @Article{far-ioa:96a,  @Article{far-ioa:96a,
189   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
190   year           = {1996a},   year           = {1996a},
# Line 143  Line 194 
194   volume         = {53},   volume         = {53},
195   pages          = {2025--2040},   pages          = {2025--2040},
196                    }                    }
197    
198  @Article{far-ioa:96b,  @Article{far-ioa:96b,
199   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
200   year           = {1996b},   year           = {1996b},
# Line 153  Line 204 
204   volume         = {53},   volume         = {53},
205   pages          = {2041--2053},   pages          = {2041--2053},
206                    }                    }
207    
208  @techreport{fau-pap:98,  @techreport{fau-pap:98,
209   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
210   year           = 1998,   year           = 1998,
# Line 166  Line 217 
217                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
218   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
219                    }                    }
220    
221  @Article{fau:00,  @Article{fau:00,
222   author         = {C. Faure},   author         = {C. Faure},
223   year           = {2000},   year           = {2000},
# Line 174  Line 225 
225   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
226   note           = {in press},   note           = {in press},
227                    }                    }
228    
229    @Article{fer-eta:05,
230     author         = {D. Ferreira and J. Marshall and P. Heimbach},
231     year           = 2005,
232     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
233                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
234     journal        = jpo,
235     volume         = {35},
236     pages          = {1891--1910},
237                      }
238    
239    @Article{gas-eta:90,
240     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
241     year           = 1990,
242     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
243                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
244                       Upper Ocean Study Site},
245     journal        = jgr,
246     volume         = {95 (C9)},
247     pages          = {16,179--16,193},
248                      }
249    
250  @Article{gen-mcw:90,  @Article{gen-mcw:90,
251   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
252   year           = 1990,   year           = 1990,
253   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
254   journal        = jpo,   journal        = jpo,
255   volume         = {20},   volume         = {20},
256   pages          = {150--155},   pages          = {150--155},
257                    }                    }
258    
259  @Article{gen-eta:95,  @Article{gen-eta:95,
260   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
261   year           = 1995,   year           = 1995,
262   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
263   journal        = jpo,   journal        = jpo,
264   volume         = {25},   volume         = {25},
265   pages          = {463--474},   pages          = {463--474},
266                    }                    }
267    
268  @Article{gie-kam:98,  @Article{gie-kam:98,
269   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
270   year           = 1998,   year           = 1998,
# Line 207  Line 277 
277  @techreport{gie:99,  @techreport{gie:99,
278   author         = {R. Giering},   author         = {R. Giering},
279   year           = 1999,   year           = 1999,
280   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
281                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
282   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
283   type           = {Report},   type           = {Report},
# Line 216  Line 286 
286                    02139; USA},                    02139; USA},
287   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
288                    }                    }
289    
290  @incollection{gie:00,  @incollection{gie:00,
291   author         = {R. Giering},   author         = {R. Giering},
292   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 240  Line 310 
310   volume         = {45},   volume         = {45},
311   pages          = {407--435},   pages          = {407--435},
312                    }                    }
313    
314  @book{gil-eta:81,  @book{gil-eta:81,
315   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
316   title          = {Practical optimization},   title          = {Practical optimization},
317   year           = 1981,   year           = 1981,
318   publisher      = {Academic Press},   publisher      = {Academic Press},
319   address        = {London},   address        = {London},
320   pages          = {401 pp.},   pages          = {401 pp.},
321                    }                    }
322                                                                      
323    @incollection{gri:89,
324     author         = {A. Griewank},
325     year           = 1989,
326     title          = {On automatic differentiation},
327     booktitle      = {Mathematical Programming: Recent Developments and
328                      Applications},
329     pages          = {83--108},
330     editor         = {M. Iri and K. Tanabe},
331     publisher      = {Kluwer},
332     address        = {Dordrecht, NL},
333                      }
334    
335    @Article{gri:92,
336      author =       {A.~Griewank},
337      title =        {Achieving logarithmic growth of temporal and spatial
338      complexity in reverse {A}utomatic {D}ifferentiation},
339      journal       = {Optimization Methods and Software},
340      year          = {1992},
341      volume        = {1},
342      pages         = {35--54}
343    }
344    
345  @book{gri:00,  @book{gri:00,
346   author         = {A. Griewank},   author         = {A. Griewank},
347   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 258  Line 350 
350   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
351   volume         = {19},   volume         = {19},
352   publisher      = {SIAM},   publisher      = {SIAM},
353   address        = {Philadelphia},   address        = {Philadelphia},
354   pages          = {369 pp.},   pages          = {369 pp.},
355                    }                    }
356                                                                      
357  @Article{hal-eta:82,  @Article{hal-eta:82,
358   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
359   year           = 1982,   year           = 1982,
# Line 271  Line 363 
363   volume         = {39},   volume         = {39},
364   pages          = {2038--3050},   pages          = {2038--3050},
365                    }                    }
366    
367    @Article{Haney,
368      author =       {R.L. Haney},
369      title =        {Surface thermal boundary conditions for ocean
370                      circulation models},
371      journal =      jpo,
372      year =         1971,
373      volume =       1,
374      pages =        {241--248}
375    }
376    
377    @Article{held-suar:94,
378     author         = {I.M. Held and M.J. Suarez},
379     year           = {1994},
380     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
381     journal        = {Bulletin of the American Meteorological Society},
382     volume         = {75(10)},
383     pages          = {1825-1830}
384    }
385    
386  @Article{hil-eta:01,  @Article{hil-eta:01,
387   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
388                    J. Marshall},                    J. Marshall},
389   year           = {2001},   year           = {2002},
390   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
391                    circulation on carbon sequestration},                    circulation on carbon sequestration},
392   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
393   note           = {submitted},   note           = {submitted},
394                    }                    }
395    
396    @ARTICLE{hib80,
397      author =       {Hibler, III, William D.},
398      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
399      JOURNAL     = mwr,
400      YEAR        = 1980,
401      VOLUME      = 1,
402      PAGES       = "1943-1973"
403    }
404    
405    @Article{Holland75,
406     author         = {W.R. Holland and L. B. Lin},
407     year           = {1975a},
408     title          = {On the origin of mesoscale eddies and their contribution
409                       to the general circulation of the ocean. I. A preliminary
410                       numerical experiment},
411     journal        = jpo,
412     volume         = {5},
413     pages          = {642-657}
414                      }
415    
416    @Article{hol-lin:75b,
417     author         = {W.R. Holland and L. B. Lin},
418     year           = {1975b},
419     title          = {On the origin of mesoscale eddies and their contribution
420                       to the general circulation of the ocean. II. A parameter
421                       study},
422     journal        = jpo,
423     volume         = {5},
424     pages          = {658-669}
425                      }
426    
427    @Article{jam-oze:86,
428     author         = {B.M. Jamart and J. Ozer},
429     year           = {1986},
430     title          = {Numerical boundary layers and spurious residual flows},
431     journal        = jgr,
432     volume         = {91},
433     pages          = {10,621-10,631}
434                      }
435    
436  @book{kas-eta:00,  @book{kas-eta:00,
437   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
438                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 297  Line 448 
448  @Article{lar-eta:94,  @Article{lar-eta:94,
449   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
450   year           = 1994,   year           = 1994,
451   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
452   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
453   volume         = {32},   volume         = {32},
454   pages          = {363--403},   pages          = {363--403},
455                    }                    }
456    
457  @Article{lar-eta:97,  @Article{lar-eta:97,
458   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
459                    and J.C. McWilliams},                    and J. C. McWilliams},
460   year           = 1997,   year           = 1997,
461   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
462                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
463   journal        = jpo,   journal        = jpo,
464   volume         = {27},   volume         = {27},
465     number         = 11,
466   pages          = {2418--2447},   pages          = {2418--2447},
467                    }                    }
468    
469  @Article{led-tal:86,  @Article{led-tal:86,
470   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
471   year           = 1986,   year           = 1986,
# Line 326  Line 476 
476   volume         = {38A},   volume         = {38A},
477   pages          = {97--110},   pages          = {97--110},
478                    }                    }
479    
480    @TechReport{lev:94a,
481      author =       {S. Levitus and T.P.Boyer},
482      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
483      institution =  {NOAA Atlas NESDIS 3},
484      year =         1994,
485      OPTkey =       {},
486      OPTtype =      {},
487      OPTnumber =    {},
488      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
489      OPTmonth =     {},
490      OPTnote =      {},
491      OPTannote =    {}
492    }
493    
494    
495    @TechReport{Levitus94,
496      author =       {S. Levitus and T.P.Boyer},
497      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
498      institution =  {NOAA Atlas NESDIS 4},
499      year =         1994,
500      OPTkey =       {},
501      OPTtype =      {},
502      OPTnumber =    {},
503      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
504      OPTmonth =     {},
505      OPTnote =      {},
506      OPTannote =    {}
507    }
508    
509    
510  @Article{lew-der:85,  @Article{lew-der:85,
511   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
512   year           = {1985},   year           = {1985},
# Line 336  Line 516 
516   volume         = {37A},   volume         = {37A},
517   pages          = {309--322},   pages          = {309--322},
518                    }                    }
519    
520  @techreport{lon:88,  @techreport{lon:88,
521   author         = {R.B. Long},   author         = {R.B. Long},
522   year           = 1988,   year           = 1988,
# Line 348  Line 528 
528   pages          = {38 pp.},   pages          = {38 pp.},
529   address        = {Delft (NL)},   address        = {Delft (NL)},
530                    }                    }
531    
532    @ARTICLE{losc-heim:06,
533      author =       {Martin Losch and Patrick Heimbach},
534      title =        {Adjoint Sensitivity of an Ocean General Circulation
535                      Model to Bottom Topography},
536      journal =      jpo,
537      year =         2007,
538      volume =       37,
539      doi =          {10.1175/JPO3017.1},
540      number =       2,
541      pages =        {377--393},
542      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
543    }
544    
545    
546  @Article{maro-wun:93,  @Article{maro-wun:93,
547   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
548   year           = 1993,   year           = 1993,
# Line 359  Line 553 
553   volume         = {98, C11},   volume         = {98, C11},
554   pages          = {20,149--20,167},   pages          = {20,149--20,167},
555                    }                    }
556    
557  @Article{maro-eta:99,  @Article{maro-eta:99,
558   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
559                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
560   year           = 1999,   year           = 1999,
561   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 371  Line 565 
565   volume         = {104, C12},   volume         = {104, C12},
566   pages          = {29,529--29,547},   pages          = {29,529--29,547},
567                    }                    }
568    
569  @Article{mars-eta:97a,  @Article{mars-eta:97a,
570   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
571                    A. Adcroft},                    A. Adcroft},
# Line 382  Line 576 
576   volume         = {102, C3},   volume         = {102, C3},
577   pages          = {5,733--5,752},   pages          = {5,733--5,752},
578                    }                    }
579    
580  @Article{mars-eta:97b,  @Article{mars-eta:97b,
581   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
582                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
583   year           = {1997b},   year           = {1997b},
584   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 393  Line 587 
587   volume         = {102, C3},   volume         = {102, C3},
588   pages          = {5,753--5,766},   pages          = {5,753--5,766},
589                    }                    }
590    
591  @Article{mars-sha:98,  @Article{mars-eta:98,
592   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
593   year           = 1998,   year           = 1998,
594   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 596 
596   journal        = jms,   journal        = jms,
597   volume         = {18},   volume         = {18},
598   pages          = {115--134},   pages          = {115--134},
599     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
600     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
601                    }                    }
602    
603  @Article{mcw:96,  @Article{mol:09,
604   author         = {J. McWilliams},   author         = {Andrea Molod},
605   year           = 1996,   year           = 2009,
606   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
607   journal        = arfm,                     algorithm and tests},
608   volume         = {28},   journal        = tel,
609   pages          = {215--248},   volume         = {61A},
610     pages          = {381--393},
611                    }                    }
612    
613    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
614    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
615    %% (Available from Unidata or in PostScript form by anonymous FTP from
616    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
617    %%   a hypertext version of the User's Guide available at
618    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
619    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
620    %%   also available.
621    
622    @incollection{naum-etal:06,
623            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
624            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
625            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
626            Pages = {~},
627            Publisher = {TU Delft},
628            Title = {Adjoint code by source transformation with OpenAD/F},
629            Year = {2006}}
630    
631    @Article{orl:76,
632     author         = {I. Orlanski},
633     year           = 1976,
634     title          = {A simple boundary condition for unbounded hyperbolic flows},
635     journal        = jcp,
636     volume         = {21},
637     pages          = {251--269},
638                    }
639    
640    @Article{pal-rom:97,
641     author         = {T. Paluszkiewicz and R.D. Romea},
642     year           = 1997,
643     title          = {A one-dimensional model for the parameterization
644                      of deep convection in the ocean},
645     journal        = dao,
646     volume         = {26},
647     pages          = {95--130},
648                      }
649    
650    @TechReport{rew:97,
651      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
652      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
653                      An Interface for Data Access, Version 3},
654      institution =  {Unidata Program Center},
655      type =         {Report},
656      address =      {Boulder, Colorado},
657      year =         1997,
658      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
659    }
660    
661    
662  @Article{res-eta:98,  @Article{res-eta:98,
663   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
664   year           = 1998,   year           = 1998,
665   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
666                    data assimilation studies},                    data assimilation studies},
667   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
668   volume         = {19},   volume         = {19},
669   pages          = {1586--1605},   pages          = {1586--1605},
670                    }                    }
671    
672  @Article{ros-eta:93,  @Article{ros-eta:93,
673   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
674   year           = 1993,   year           = 1993,
# Line 431  Line 677 
677   volume         = {45A},   volume         = {45A},
678   pages          = {558--568},   pages          = {558--568},
679                    }                    }
680    
681  @incollection{she-and:89,  @incollection{she-and:89,
682   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
683   year           = 1989,   year           = 1989,
684   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
685                    technique},                    technique},
686   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
687                    Combining data and dynamics},                    Combining data and dynamics},
# Line 446  Line 692 
692   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
693   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
694                    }                    }
695    
696  @techreport{sta-eta:97,  @article{utke-etal:08,
697            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
698            Date-Modified = {2007-11-19 10:15:08 -0500},
699            Journal = {{ACM} Transactions on Mathematical Software},
700            Pages = {~},
701            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
702            Volume = {34(4)},
703            Year = {2008}}
704    
705    @Article{DaSilva94,
706     author         = {A. da Silva and A. C. Young and S. Levitus},
707     year           = 1994,
708     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
709     journal        = {NOAA Atlas NESDIS},
710     volume         = {6},
711     publisher      = {U.S. Department of Commerce},
712     address        = {Washington, D.C. (USA)},
713     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
714     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
715                      }
716    
717    @techreport{stam-etal:97,
718   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
719                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
720                    C. Hill},                    C. Hill},
721   year           = 1997,   year           = 1997,
722   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
723                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
724                    model},                    model},
725   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 462  Line 729 
729   pages          = {40 pp.},   pages          = {40 pp.},
730   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
731                    }                    }
732    
733  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
734   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
735                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
736                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
737   year           = 2001,    year = {2002a},
738   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
739                    estimated from ocean observations and a general    pages = {3118},
740                    circulation model},    doi   = {10.1029/2001JC000888},
741   journal        = jgr,  }
742   note           = {submitted},  
743    
744    @Article{Stommel66,
745     author         = {H. Stommel},
746     year           = 1948,
747     title          = {The western intensification of wind-driven ocean currents},
748     journal        = {Trans. Am. Geophys. Union},
749     volume         = {29},
750     pages          = {206},
751                    }                    }
752    
753  @Article{tal-cou:87,  @Article{tal-cou:87,
754   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
755   year           = 1987,   year           = 1987,
756   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
757                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
758                    I: Theory},                    I: Theory},
759   journal        = qjrms,   journal        = qjrms,
760   volume         = {113},   volume         = {113},
761   pages          = {1311--1328},   pages          = {1311--1328},
762                    }                    }
763    
764  @Article{tal:97,  @Article{tal:97,
765   author         = {O. Talagrand},   author         = {O. Talagrand},
766   year           = 1997,   year           = 1997,
# Line 494  Line 769 
769   volume         = {75},   volume         = {75},
770   pages          = {191--209},   pages          = {191--209},
771                    }                    }
772    
773  @book{tar:87,  @book{tar:87,
774   author         = {A. Tarantola},   author         = {A. Tarantola},
775   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
776                    and model parameter estimation},                    and model parameter estimation},
777   year           = 1987,   year           = 1987,
778   publisher      = {Elsevier},   publisher      = {Elsevier},
779   address        = {Amsterdam},   address        = {Amsterdam},
780   pages          = {629 pp.},   pages          = {629 pp.},
781                    }                    }
782                                                                      
783  @techreport{tha:87,  @techreport{tha:87,
784   author         = {W.C. Thacker},   author         = {W.C. Thacker},
785   year           = 1987,   year           = 1987,
# Line 516  Line 791 
791   pages          = {64 pp.},   pages          = {64 pp.},
792   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
793                    }                    }
794    
795  @Article{tha-lon:88,  @Article{tha-lon:88,
796   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
797   year           = 1988,   year           = 1988,
# Line 525  Line 800 
800   volume         = {93, C2},   volume         = {93, C2},
801   pages          = {1,227--1,240},   pages          = {1,227--1,240},
802                    }                    }
803    
804  @Article{tha:88,  @Article{tha:88,
805   author         = {W.C. Thacker},   author         = {W.C. Thacker},
806   year           = 1988,   year           = 1988,
# Line 535  Line 810 
810   volume         = {93},   volume         = {93},
811   pages          = {10,655--10,665},   pages          = {10,655--10,665},
812                    }                    }
813    
814  @Article{tha:89,  @Article{tha:89,
815   author         = {W.C. Thacker},   author         = {W.C. Thacker},
816   year           = 1989,   year           = 1989,
# Line 545  Line 820 
820   volume         = {94, C5},   volume         = {94, C5},
821   pages          = {6,177--6,196},   pages          = {6,177--6,196},
822                    }                    }
823    
824  @Article{tha-rag:94,  @Article{tha-rag:94,
825   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
826   year           = 1994,   year           = 1994,
# Line 555  Line 830 
830   volume         = {99, C5},   volume         = {99, C5},
831   pages          = {10,131--10,141},   pages          = {10,131--10,141},
832                    }                    }
833    
834  @Article{tzi-tha:89,  @Article{tzi-tha:89,
835   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
836   year           = {1989},   year           = {1989},
# Line 565  Line 840 
840   volume         = {19},   volume         = {19},
841   pages          = {1471--1485},   pages          = {1471--1485},
842                    }                    }
843    
844  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
845   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
846                    S. Hwang},                    S. Hwang},
# Line 576  Line 851 
851   volume         = {22},   volume         = {22},
852   pages          = {1434--1457},   pages          = {1434--1457},
853                    }                    }
854    
855  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
856   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
857                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 587  Line 862 
862   volume         = {22},   volume         = {22},
863   pages          = {1458--1485},   pages          = {1458--1485},
864                    }                    }
865    
866  @book{wun:96,  @book{wun:96,
867   author         = {C. Wunsch},   author         = {C. Wunsch},
868   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
869   year           = 1996,   year           = 1996,
870   publisher      = cup,   publisher      = cup,
871   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
872   pages          = {442 pp.},   pages          = {442 pp.},
873                    }                    }
874                                                                      
875  @Article{zha-mar:99,  @Article{zha-mar:99,
876   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
877   year           = 1999,   year           = 1999,
# Line 606  Line 881 
881   volume         = {57},   volume         = {57},
882   pages          = {305--334},   pages          = {305--334},
883                    }                    }
884    
885    
886    @InCollection{hill:95,
887      author =       {Hill, C. and J. Marshall},
888      title =        {Application of a Parallel Navier-Stokes Model to
889                      Ocean Circulation in Parallel Computational Fluid
890                      Dynamics},
891      booktitle =    {Implementations and Results Using Parallel
892                      Computers},
893      pages =        {545-552},
894      publisher =    {Elsevier Science B.V.: New York},
895      year =         1995,
896      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
897    }
898    
899    
900    @Article{marshall:97a,
901      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
902      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
903                     modeling},
904      journal =      jgr,
905      year =         1997,
906      volume =       102,
907      number =       {C3},
908      pages =        {5733-5752},
909      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
910    }
911    
912    @Article{marshall:97b,
913      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
914      title =        {A finite-volume, incompressible Navier Stokes model for
915                      studies of the ocean on parallel computers},
916      journal =      jgr,
917      year =         1997,
918      volume =       102,
919      number =       {C3},
920      pages =        {5753-5766},
921      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
922    }
923    
924    @Article{adcroft:97,
925      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
926      title =        {Representation of topography by shaved cells in a height
927                      coordinate ocean model},
928      journal =      mwr,
929      year =         1997,
930      volume =       125,
931      pages =        {2293-2315},
932      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
933      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
934    }
935    
936    @Article{adcroft:04a,
937      author =       {Adcroft, A. and J.-M. Campin},
938      title =        {Re-scaled height coordinates for accurate representation
939                      of free-surface flows in ocean circulation models},
940      journal =      om,
941      year =         2004,
942      volume =       7,
943      pages =        {269-284},
944      doi   =        {10.1016/j.ocemod.2003.09.003},
945    }
946    
947    @Article{adcroft:04b,
948      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
949      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
950                      on the Expanded Spherical Cube},
951      journal =      mwr,
952      year =         2004,
953      volume =       132,
954      pages =        {2845-2863},
955      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
956      doi     =      {10.1175/MWR2823.1},
957    }
958    
959    @inproceedings{adcroft:04c,
960      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
961                      and P. Heimbach},
962      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
963      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
964                     Recent developments in numerical methods for atmosphere and
965                     ocean modelling},
966      year =         2004,
967      pages =        {139-149},
968      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
969     publisher =     ecmwf
970    }
971    
972    @Article{marshall:04,
973      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
974      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
975      journal =      mwr,
976      year =         2004,
977      volume =       132,
978      pages =        {2882-2894},
979      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
980      doi    =       {10.1175/MWR2835.1},
981    }
982    
983    @Article{visbeck:97,
984      author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
985      title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
986      journal =      jpo,
987      year =         1997,
988      volume =       27,
989      number =       3,
990      pages =        {381-402}
991    }
992    
993    @Article{shaw:98,
994      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
995                      and Marshall, J.},
996      title =        {A comparison of implicitly parallel multi-threaded and
997                      data-parallel implementations of an ocean model based
998                      on the Navier-Stokes equations},
999      journal =      {J. of Parallel and Distributed Computing},
1000      year =         1998,
1001      volume =       48,
1002      number =       1,
1003      pages =        {1-51}
1004    }
1005    
1006    @Article{mjn:99,
1007      author =       {Marshall, J., Jamous, D and J. Nilsson},
1008      title =        {Reconciling `thermodynamic' and `dynamic' methods of
1009                      computation of water-mass transformation rates},
1010      journal =      {DSR},
1011      year =         1999,
1012      volume =       46,
1013      pages =        {545-572}
1014    }
1015    
1016    @Article{ms:99,
1017      author =       {Marshall, J and F. Schott},
1018      title =        {Open ocean deep convection: observations, models and theory},
1019      journal =      {Rev. Geophys.},
1020      year =         1999,
1021      volume =       37,
1022      number =       1,
1023      pages =        {1-64}
1024    }
1025    
1026    @Article{adcroft:99,
1027      author =       {Adcroft, A., Hill C. and J. Marshall},
1028      title =        {A new treatment of the Coriolis terms in C-grid models
1029                      at both high and low resolutions},
1030      journal =      mwr,
1031      year =         1999,
1032      volume =       127,
1033      pages =        {1928-1936},
1034      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1035      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1036    }
1037    
1038    @InProceedings{hill:99,
1039      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1040      title =        {A Strategy for Terascale Climate Modeling},
1041      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1042      year =         1999,
1043      pages = {406-425},
1044      publisher =    {World Scientific},
1045    }
1046    
1047    @Article{wardle:00,
1048      author =       {Wardle R. and Marshall J.},
1049      title =        {Representation of eddies in primitive equation models by a PV flux},
1050      journal =      jpo,
1051      year =         2000,
1052      volume =       30,
1053      number =       10,
1054      pages =        {2481-2503}
1055    }
1056    
1057    @Article{ac:02,
1058      author =       {Adcroft, A. and J.-M. Campin},
1059      title =        {Comparison of finite volume schemes and direct-space-time
1060                      methods for ocean circulation models},
1061      journal =      om,
1062      year =         2002,
1063      note =         {in preparation}
1064    }
1065    
1066    @Article{adcroft:02,
1067      author =       {Adcroft, A., et~al.},
1068      title =        {Energy conversion in discrete numerical models},
1069      journal =      om,
1070      year =         2002,
1071      note =         {in preparation}
1072    }
1073    
1074    @InCollection{arakawa:77,
1075      author =       {Arakawa, A. and Lamb, V.},
1076      title =        {Computational Design of the Basic Dynamical Processes of
1077                      the UCLA General Circulation Model},
1078      booktitle =    {Methods in Computational Physics},
1079      pages =        {174-267},
1080      publisher =    {Academic Press},
1081      year =         1977,
1082      volume =       17
1083    }
1084    
1085    @Article{miller_white:84,
1086      author =       {Miller, M. J. and White, A. A.},
1087      title =        {On the non-hydrostatic equations in pressure
1088                      and sigma coordiantes},
1089      journal =      qjrms,
1090      year =         1984,
1091      volume =       110,
1092      pages =        {515-533}
1093    }
1094    
1095    @Article{white:89,
1096      author =       {White, A. A.},
1097      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1098      journal =      qjrms,
1099      year =         1989,
1100      volume =       115,
1101      pages =        {1243-1251}
1102    }
1103    
1104    @Article{adcroft:98,
1105      author =       {Adcroft, A. and Marshall, D.},
1106      title =        {How slippery are piecewise-constant coastlines in numerical
1107                      ocean models?},
1108      journal =      {Tellus},
1109      year =         1998,
1110      volume =       50,
1111      number =       1,
1112      pages =        {95-108}
1113    }
1114    
1115    @PhdThesis{adcroft:95,
1116      author =       {Adcroft, A.},
1117      title =        {Numerical Algorithms for use in a Dynamical Model of the
1118                      Ocean},
1119      school =       {Imperial College, London},
1120      year =         1995
1121    }
1122    
1123    @Article{griffies:00,
1124      author =       {Griffies, S.,M. and Hallberg, R.,W.},
1125      title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1126                      use in large-scale eddy-permitting ocean models},
1127      journal =      mwr,
1128      year =         2000,
1129      volume =       128,
1130      number =       8,
1131      pages =        {2935-2946}
1132    }
1133    
1134    @Article{wajsowicz:93,
1135      author =       {Wajsowicz, R.},
1136      title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1137                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1138      journal =      jcp,
1139      year =         1993,
1140      volume =       105,
1141      number =       2,
1142      pages =        {333-338}
1143    }
1144    
1145    @Article{campin:02,
1146      author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1147      title =        {Conservation of properties in a free-surface model},
1148      journal =      om,
1149      year =         2004,
1150      volume =       6,
1151      pages =        {221-244}
1152    }
1153    
1154    @Article{Cox87,
1155      author =       {M. D. Cox},
1156      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1157      journal =      {Ocean modelling},
1158      year =         1987,
1159      volume =       74,
1160      pages =        {1-5 (Unpublished manuscript)}
1161    }
1162    
1163    @Article{gretal:98,
1164      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1165      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1166      journal =      jpo,
1167      year =         1998,
1168      volume =       28,
1169      pages =        {805-830}
1170    }
1171    
1172    @ARTICLE{gr:98,
1173      author =       {S. M. Griffies},
1174      title =        {The {Gent-McWilliams} Skew Flux},
1175      journal =      jpo,
1176      year =         1998,
1177      volume =       28,
1178      pages =        {831-841}
1179    }
1180    
1181    
1182    @Article{gkw:91,
1183      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1184      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1185      journal =      climd,
1186      year =         1991,
1187      volume =       5,
1188      number =       4,
1189      pages =        {211-226},
1190      doi   =        {10.1007/BF00210006}
1191    }
1192    
1193    @Article{dm:95,
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1213    @incollection{roe:85,
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1215     year           = 1985,
1216     title          = {Some contributions to the modelling of discontinuous flows},
1217     booktitle      = {Large-Scale Computations in Fluid Mechanics},
1218     series         = {Lectures in Applied Mathematics},
1219     volume         = 22,
1220     pages          = {163-193},
1221     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1222     publisher      = {American Mathematical Society},
1223     address        = {Providence, RI},
1224    }
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1239                      parametrization, {I}: Model climatology and variability in
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1249      title =        {An Assessment of the {G}eophysical {F}luid
1250                      {D}ynamics {L}aboratory Ocean Model with Coarse
1251                      Resolution: Annual-Mean Climatology},
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1273                      Achieve Static Stability},
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1281    @Article{mcdougall03,
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1283                      G. Wright and Rainer Feistel},
1284      title =        {Accurate and Computationally Efficient Algorithms
1285                      for Potential Temperature and Density of Seawater},
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1290      OPTnumber =    {},
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1293      OPTnote =      {{\textup{In press}}},
1294      OPTannote =    {}
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1299      title =        "Algorithms for Computation of Fundamental Properties
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1301      institution =  "Unesco",
1302      year =         1983,
1303      type =         "Unesco Technical Papers in Marine Science",
1304      number =       44,
1305      pages =        {53 pp.}
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1312      JOURNAL     = jpo,
1313      YEAR        = 1998,
1314      VOLUME      = 28,
1315      PAGES       = "191-217"
1316    }
1317    
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1320      TITLE       = "A model for the thermodynamic growth of sea ice in
1321                     numerical investigations of climate",
1322      JOURNAL     = jpo,
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1324      VOLUME      = 6,
1325      PAGES       = "379-389"
1326    }
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1331      JOURNAL     = jaot,
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1333      VOLUME      = 17,
1334      PAGES       = "525-531"
1335    }
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1339      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1340      JOURNAL     = jpo,
1341      YEAR        = 1979,
1342      VOLUME      = 9,
1343      PAGES       = "815-846"
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1346    @ARTICLE{fla92,
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1348      TITLE       = "Modeling pack ice as a cavitating fluid",
1349      JOURNAL     = jpo,
1350      YEAR        = 1992,
1351      VOLUME      = 22,
1352      PAGES       = "626-651"
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1357      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1358      JOURNAL     = jpo,
1359      YEAR        = 1997,
1360      VOLUME      = 27,
1361      PAGES       = "1849--1867"
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1366      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
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1371      pages =        {18--38},
1372      doi =          {10.1006/jcph.2001.6710}
1373    }
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1377      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1378      JOURNAL     = jgr,
1379      YEAR        = 2000,
1380      VOLUME      = 105,
1381      PAGES       = "3325--3338"
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1386      title =        {Smoothing, filtering, and boundary effects},
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1391      pages =        {359--387},
1392    }
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1395      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1396      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1397                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
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1399      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1400      year =         {2005},
1401      OPTnumber =    {122},
1402      address =      {Cambridge, MA},
1403      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1404    }
1405    
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1408      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1409                      Biogeochemistry Models},
1410      journal =      {Ocean Modeling},
1411      year =         {{in press}},
1412      OPTkey =       {},
1413      OPTvolume =    {},
1414      OPTnumber =    {},
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1420      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1421                      Equatorial Pacific and the North Atlantic},
1422      journal =      {Global Biogeochemical Cycles},
1423      year =         {2004},
1424      OPTkey =       {},
1425      volume =       {18},
1426      number =       {doi:10.1029/2003GB002179},
1427      OPTpages =     {},
1428    }
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1432      title =        {A global wind stress climatology based on ECMWF analyses},
1433      institution =  {NCAR},
1434      year =         {1989},
1435      OPTkey =       {},
1436      OPTtype =      {},
1437      number =       {NCAR/TN-338+STR},
1438      address =      {Boulder, CO},
1439      OPTmonth =     {},
1440    }
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1445      journal =      jgr,
1446      year =         {1992},
1447      OPTkey =       {},
1448      volume =       {97},
1449      OPTnumber =    {},
1450      pages =        {7373--7382},
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1457     title        = {High Resolution Models of the Planetary Boundary Layer.},
1458     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1459     editor       = {Pfafflin and Zeigler},
1460     publisher    = {Gordon and Breach, Scientific Publishers}
1461    }
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1465     year         = {1992},
1466     title        = {A solar radiation model for use in climate studies.},
1467     journal      = jas,
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1469     pages        = {762-772}
1470    }
1471    
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1477     journal      = jclim,
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1479     pages        = {209-217}
1480    }
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1484     year         = {1994},
1485     title        = {An efficient thermal infrared radiation parameterization
1486    for use in general circulation models},
1487     institution  = {National Aeronautics and Space Administration},
1488     type         = {NASA Technical Memorandum},
1489     number       = {104606-Vol 3},
1490     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1491     note         = {http://www.gmao.nasa.gov/}
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1517     journal      = jam,
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1519     pages        = {833-855}
1520    }
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1534     year         = {1991},
1535     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1536     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1537     year         = 1991,
1538     pages        = {406-425},
1539     publisher    = {American Meteorological Society}
1540    }
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1545     title        = { Climatology of the
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1550     pages        = {784-806}
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1559     pages        = {91-112}
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1566     institution  = {National Aeronautics and Space Administration},
1567     type         = {NASA Technical Memorandum},
1568     number       = {104538},
1569     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1570     note         = {http://www.gmao.nasa.gov/},
1571    }
1572    
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1575     year         = {1992},
1576     title        = { Modeling the Land Surface Boundary
1577    in Climate Models as a Composite of Independent Vegetation Stands.},
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1579     volume       = {97},
1580     pages        = {2697-2715}
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1587    in the Earth's atmosphere.  },
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1589     volume       = {31},
1590     pages        = {118-133}
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1598     volume       = {11},
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1609     pages        = {978-1002}
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1640    @Article{sudm:88,
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1644    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1645     journal      = mwr,
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1653     title        = {  Dynamical aspects of climate simulations Using the GEOS
1654    General Circulation Model},
1655     institution  = {National Aeronautics and Space Administration},
1656     type         = {NASA Technical Memorandum},
1657     number       = {104606 Volume 10},
1658     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1659     note         = {http://www.gmao.nasa.gov/},
1660    }
1661    
1662    @Article{yagkad:74,
1663     author       = {A. M. Yaglom and B. A. Kader},
1664     year         = {1974},
1665     title        = {Heat and mass transfer between a rough wall and
1666    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1667     journal      = jfm,
1668     volume       = {62},
1669     pages        = {601-623}
1670    }
1671    
1672    @Article{yam:77,
1673     author       = {T. Yamada},
1674     year         = {1977},
1675     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1676    atmospheric boundary layer.},
1677     journal      = {Atmos. Environ.},
1678     volume       = {11},
1679     pages        = {1015-1024}
1680    }
1681    
1682    @Article{zhouetal:95,
1683     author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1684     year         = {1995},
1685     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1686     journal      = qjrms,
1687     volume       = {122},
1688     pages        = {903-927}
1689    }
1690    
1691    @Article{breth:99,
1692     author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1693                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1694                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1695                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1696     year           = 1999,
1697     title          = {An intercomparison of radiatively driven entrainment and turbulence
1698                      in a smoke cloud, as simulated by different numerical models.},
1699     journal        = qjrms,
1700     volume         = {125},
1701     pages          = {391-423}
1702                      }
1703    
1704    @Article{bm:99,
1705     author         = {A. C. Bushell and G.M. Martin},
1706     year           = 1999,
1707     title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1708     journal        = {Climate Dyn.},
1709     volume         = {15},
1710     pages          = {293-318}
1711                      }
1712    
1713    @Article{Inn:01,
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1715     year           = 2001,
1716     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1717                      Implications for the Simulation of the Madden-Julian Oscillation.},
1718     journal        = {Climate Dyn.},
1719     volume         = {17},
1720     pages          = {777-794}
1721                      }
1722    
1723    @Article{kal:89,
1724     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1725                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1726     year           = 1989,
1727     title          = {Rules for Interchange of Physical Parameterizations.},
1728     journal        = bams,
1729     volume         = {70},
1730     pages          = {620-622}
1731                      }
1732    
1733    @Article{wo:98,
1734     author         = {D. Williamson and J.G. Olsen},
1735     year           = 1998,
1736     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1737     journal        = mwr,
1738     volume         = {126},
1739     pages          = {991-1000}
1740                      }
1741    
1742    @TechReport{MPI-std-20,
1743      author =       {{Message Passing Interface Forum}},
1744      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1745      institution =  {mpi-forum.org},
1746      year =         {1998},
1747    }
1748    
1749    @Article{cam08,
1750      author =       {Jean-Michel Campin and John Marshall and David
1751                      Ferreira},
1752      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1753                      Coordinate z$^\ast$},
1754      journal =      om,
1755      volume =       24,
1756      number =       {1--2},
1757      pages =        {1--14},
1758      doi =          {10.1016/j.ocemod.2008.05.005},
1759      year =         2008
1760    }
1761    
1762    @Article{geiger98,
1763      author =       {Cathleen A. Geiger and Hibler, III, William D. and
1764                      Stephen F. Ackley},
1765      title =        {Large-Scale Sea Ice Drift and Deformation:
1766                      {C}omparison between Models and Observations in the
1767                      Western {W}eddell {S}ea during 1992},
1768      journal =      jgr,
1769      year =         1998,
1770      volume =       103,
1771      number =       {C10},
1772      pages =        {21893--21913}
1773    }
1774    
1775    @InCollection{hibler84,
1776      author =       {Hibler, III, William D.},
1777      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1778                      increases},
1779      booktitle =    {Climate processes and climate sensitivity},
1780      pages =        {238--253},
1781      publisher =    {AGU},
1782      year =         1984,
1783      editor =       {J. E. Hansen and T. Takahashi},
1784      volume =       29,
1785      series =       {Geophysical Monograph},
1786      address =      {Washington, D.C.}
1787    }
1788    
1789    @Article{hibler87,
1790      author =       {Hibler, III, William D. and Kirk Bryan},
1791      title =        {A Diagnostic Ice-Ocean Model},
1792      journal =      jpo,
1793      year =         1987,
1794      volume =       17,
1795      number =       7,
1796      pages =        {987--1015}
1797    }
1798    
1799    @InCollection{hibler95,
1800      author =       {Hibler, III, William D. and Chi F. Ip},
1801      title =        {The effect of sea ice rheology on {A}rcitc buoy
1802                      drift},
1803      booktitle =    {Ice Mechanics},
1804      pages =        {255--264},
1805      publisher =    {Am. Soc. of Mech. Eng.},
1806      year =         1995,
1807      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1808      volume =       204,
1809      series =       {AMD},
1810      address =      {New York}
1811    }
1812    
1813    @Article{hibler97,
1814      author =       {Hibler, III, William D. and Erland M. Schulson},
1815      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1816                      Investigations of Climate},
1817      journal =      angl,
1818      year =         1997,
1819      volume =       25,
1820      pages =        {26--32}
1821    }
1822    
1823    @Article{hundsdorfer94,
1824      author =       {Willem Hundsdorfer and R. A. Trompert},
1825      title =        {Method of Lines and Direct Discretization: a
1826                      Comparison for Linear Advection},
1827      journal =      {Applied Numerical Mathematics},
1828      year =         1994,
1829      volume =       13,
1830      number =       6,
1831      pages =        {469--490},
1832      doi =          {10.1016/0168-9274(94)90009-4}
1833    }
1834    
1835    @Article{leppaeranta83,
1836      author =       {Matti Lepp{\"a}ranta},
1837      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1838                      Thickness in Subarctic Basins},
1839      journal =      {Nordic Hydrology},
1840      year =         1983,
1841      volume =       14,
1842      pages =        {59--70}
1843    }
1844    
1845    @Article{manabe79,
1846      author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
1847      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1848                      Variation for Future Studies of Climate Sensitivity},
1849      journal =      dao,
1850      year =         1979,
1851      volume =       3,
1852      number =       {393--426}
1853    }
1854    
1855    @ARTICLE{menemenlis05,
1856      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1857                      J.-M. Campin and B. Cheng and B. Ciotti and
1858                      I. Fukumori and A. Koehl and P. Heimbach and
1859                      C. Henze and T. Lee and D. Stammer and J. Taft and
1860                      J. Zhang},
1861      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1862                      Climate Research},
1863      journal =      eos,
1864      year =         2005,
1865      volume =       86,
1866      number =       9,
1867      pages =        {89, 95--96}
1868    }
1869    
1870    @Article{parkinson79,
1871      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1872      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1873      journal =      jgr,
1874      year =         1979,
1875      month =        jan,
1876      volume =       84,
1877      number =       {C1},
1878      pages =        {311--337},
1879      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1880      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1881                      System}
1882    }
1883    
1884    @Article{semtner84,
1885      author =       {Semtner, Jr., Albert J.},
1886      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1887                      Ice in Studies of Climatic Change},
1888      journal =      cch,
1889      year =         1984,
1890      volume =       6,
1891      number =       1,
1892      pages =        {27--37}
1893    }
1894    
1895    @Article{zhang97,
1896      author =       {Jinlun Zhang and Hibler, III, William D.},
1897      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1898      journal =      jgr,
1899      year =         1997,
1900      volume =       102,
1901      number =       {C4},
1902      pages =        {8691--8702}
1903    }
1904    
1905    @Article{zhang03,
1906      author =       {Jinlun Zhang and Drew A. Rothrock},
1907      title =        {Modeling Global Sea Ice with a Thickness and
1908                      Enthalpy Distribution Model in Generalized
1909                      Curvilinear Coordinates},
1910      journal =      mwr,
1911      year =         2003,
1912      volume =       131,
1913      number =       5,
1914      pages =        {845--861}
1915    }
1916    
1917    @Article{beckmann99,
1918      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1919                      Timmermann},
1920      title =        {A Numerical Model of the {W}eddell {S}ea:
1921                      Large-Scale Circulation and Water Mass Distribution},
1922      journal =      jgr,
1923      year =         1999,
1924      volume =       104,
1925      number =       {C10},
1926      pages =        {23,375--23,392}
1927    }
1928    
1929    @Article{grosfeld97,
1930      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1931                      Determann},
1932      title =        {Thermohaline Circulation and Interaction between Ice
1933                      Shelf Cavities and the Adjacent Open Water},
1934      journal =      jgr,
1935      year =         1997,
1936      volume =       102,
1937      number =       {C7},
1938      pages =        {15,595--15,610}
1939    }
1940    
1941    @Article{hellmer89,
1942      author =       {Hartmut H. Hellmer and Dirk J. Olbers},
1943      title =        {A Two-Dimensional Model of the Thermohaline
1944                      Circulation Under an Ice Shelf},
1945      journal =      {Antarct. Sci.},
1946      year =         1989,
1947      volume =       1,
1948      pages =        {325--336}
1949    }
1950    
1951    @Article{holland99,
1952      author =       {David M. Holland and Adrian Jenkins},
1953      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
1954                      Base of an Ice Shelf},
1955      journal =      jpo,
1956      year =         1999,
1957      volume =       29,
1958      number =       8,
1959      pages =        {1787--1800}
1960    }
1961    
1962    @Article{jenkins01,
1963      author =       {Adrian Jenkins and Hartmut H. Hellmer and David
1964                      M. Holland},
1965      title =        {The Role of Meltwater Advection in the Formulation
1966                      of Conservative Boundary Conditions at an Ice-Ocean
1967                      Interface},
1968      journal =      jpo,
1969      year =         2001,
1970      volume =       31,
1971      pages =        {285--296}}
1972    
1973    @Article{losch08,
1974      author =       {Martin Losch},
1975      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
1976                      General Circulation Model},
1977      journal =      jgr,
1978      year =         2008,
1979      volume =       113,
1980      number =       {C08043},
1981      doi =          {10.1029/2007JC004368}
1982    }
1983    
1984    @Article{Dutay02,
1985     author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
1986        and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
1987        and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
1988        and G. Madec and E. Maier-Reimer and J.C. Marshall and R.J. Matear and P. Monfray
1989        and A. Mouchet and G.-K. Plattner and J. sarmiento and R. Schlitzer and R. Slater
1990        and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
1991     year           = 2002,
1992     title          = {Evaluation of ocean model ventilation with CFC-11:
1993                       comparison of 13 global ocean models},
1994     journal        = om,
1995     volume         = {4},          number= {},             month   = {},
1996     pages          = {89-120}
1997                    }
1998    
1999    @Article{marsh06,
2000     author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
2001     year           = 2006,
2002     title          = {Estimates and Implications of Surface Eddy Diffusivity
2003                       in the Southern Ocean Derived from Tracer Transport},
2004     journal        = jpo,
2005     volume         = {36},          number= {},             month   = {},
2006     pages          = {1806-1821}
2007                    }
2008    
2009    @InProceedings{hoe-hill:99,
2010      author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
2011      title =        {A Personal Supercomputer for Climate Research},
2012      booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
2013      year =         1999,
2014      pages = {10.1109/SC.1999},
2015      publisher =    {IEEE},
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2017    
2018    @Article{stevens:90,
2019      author =       {Stevens, D. P.},
2020      title =        {On Open Boundary Conditions for Three Dimensional
2021                      Primitive Equation Ocean Circulation Models},
2022      journal =      {Geophys. Astrophys. Fl. Dyn.},
2023      year =         1990,
2024      volume =       51,
2025      pages =        {103--133}}
2026    
2027    @Article{kalnay96,
2028      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
2029                      W. Collins and D. Deaven and L. Gandin and
2030                      M. Iredell and S. Saha and G. White and J. Woollen
2031                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2032                      W. Higgins and J. Janowiak and K. C. Mo and
2033                      C. Ropelewski and J. Wang and A. Leetmaa and
2034                      R. Reynolds and R. Jenne and D. Joseph},
2035      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2036      journal =      bams,
2037      year =         1996,
2038      volume =       77,
2039      pages =        {437--471}
2040    }

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