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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.45 by jmc, Tue Mar 26 15:10:46 2013 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5    @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
17  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
18    @string{om      = {Ocean Modelling}}
19  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
20  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
21  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 28  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 39  Line 46 
46   volume         = {3},   volume         = {3},
47   pages          = {625--638},   pages          = {625--638},
48                    }                    }
49    
50  @incollection{bis:94,  @incollection{bis:94,
51   author         = {C.H. Bishof},   author         = {C.H. Bishof},
52   year           = 1994,   year           = 1994,
# Line 52  Line 59 
59   publisher      = {Kluwer},   publisher      = {Kluwer},
60   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
61                    }                    }
62    
63  @techreport{bis-eta:94,  @techreport{bis-eta:94,
64   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
65                    A. Maurer},                    A. Maurer},
# Line 63  Line 70 
70                    Computer Science Division},                    Computer Science Division},
71   type           = {Argonne Preprint},   type           = {Argonne Preprint},
72   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
73   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bugi-hill:06,
79      author = {V. Bugnion and C. Hill},
80      title = {Equilibration mechanisms in an adjoint ocean general
81               circulation model},
82      journal = {Ocean Dynamics},
83      year = {2006},
84      volume = {56},
85      number = {1},
86      pages = {51-61},
87      doi   = {10.1007/s10236-005-0052-z},
88    }
89    
90  @techreport{bis-roh:97,  @techreport{bis-roh:97,
91   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
92   year           = 1997,   year           = 1997,
# Line 77  Line 96 
96                    Computer Science Division},                    Computer Science Division},
97   type           = {Argonne Preprint},   type           = {Argonne Preprint},
98   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
99   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
100                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
101   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
102                    }                    }
103    
104  @Article{cou-tal:87,  @Article{cou-tal:87,
105   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
106   year           = 1987,   year           = 1987,
107   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
108                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
109                    II: Numerical results},                    II: Numerical results},
110   journal        = qjrms,   journal        = qjrms,
111   volume         = {113},   volume         = {113},
112   pages          = {1329--1347},   pages          = {1329--1347},
113                    }                    }
114    
115  @Article{cou-tal:90,  @Article{cou-tal:90,
116   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
117   year           = 1990,   year           = 1990,
# Line 103  Line 122 
122   volume         = {42A},   volume         = {42A},
123   pages          = {531--549},   pages          = {531--549},
124                    }                    }
125    
126  @Article{cou-eta:94,  @Article{cou-eta:94,
127   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
128                    A. Hollingsworth},                    A. Hollingsworth},
# Line 114  Line 133 
133   volume         = {120},   volume         = {120},
134   pages          = {1367--1387},   pages          = {1367--1387},
135                    }                    }
136    
137    @ARTICLE{durr:91,
138      author = {Dale R. Durran},
139      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140               to Leapfrog Time Differencing},
141      journal = mwr,
142      year = {1991},
143      volume = {119},
144      pages  = {702-720},
145    }
146    
147    
148    @ARTICLE{dutk-etal:06,
149      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150      title = {Controls on ocean productivity and air-sea carbon flux:
151               An adjoint model sensitivity study},
152      journal = grl,
153      year = {2006},
154      volume = {33},
155      pages  = {L02603},
156      doi    = {10.1029/2005GL024987},
157    }
158    
159  @Article{err:97,  @Article{err:97,
160   author         = {R.M. Errico},   author         = {R.M. Errico},
161   year           = 1997,   year           = 1997,
# Line 123  Line 164 
164   volume         = {78},   volume         = {78},
165   pages          = {2577--2591},   pages          = {2577--2591},
166                    }                    }
167    
168  @Article{far-moo:92,  @Article{far-moo:92,
169   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
170   year           = {1992},   year           = {1992},
# Line 133  Line 174 
174   volume         = {22},   volume         = {22},
175   pages          = {338--349},   pages          = {338--349},
176                    }                    }
177    
178  @Article{far-ioa:96a,  @Article{far-ioa:96a,
179   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
180   year           = {1996a},   year           = {1996a},
# Line 143  Line 184 
184   volume         = {53},   volume         = {53},
185   pages          = {2025--2040},   pages          = {2025--2040},
186                    }                    }
187    
188  @Article{far-ioa:96b,  @Article{far-ioa:96b,
189   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
190   year           = {1996b},   year           = {1996b},
# Line 153  Line 194 
194   volume         = {53},   volume         = {53},
195   pages          = {2041--2053},   pages          = {2041--2053},
196                    }                    }
197    
198  @techreport{fau-pap:98,  @techreport{fau-pap:98,
199   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
200   year           = 1998,   year           = 1998,
# Line 166  Line 207 
207                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
208   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
209                    }                    }
210    
211  @Article{fau:00,  @Article{fau:00,
212   author         = {C. Faure},   author         = {C. Faure},
213   year           = {2000},   year           = {2000},
# Line 174  Line 215 
215   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
216   note           = {in press},   note           = {in press},
217                    }                    }
218    
219    @Article{fer-eta:05,
220     author         = {D. Ferreira and J. Marshall and P. Heimbach},
221     year           = 2005,
222     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal        = jpo,
225     volume         = {35},
226     pages          = {1891--1910},
227                      }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
242   year           = 1990,   year           = 1990,
243   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
244   journal        = jpo,   journal        = jpo,
245   volume         = {20},   volume         = {20},
246   pages          = {150--155},   pages          = {150--155},
247                    }                    }
248    
249  @Article{gen-eta:95,  @Article{gen-eta:95,
250   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
251   year           = 1995,   year           = 1995,
252   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
253   journal        = jpo,   journal        = jpo,
254   volume         = {25},   volume         = {25},
255   pages          = {463--474},   pages          = {463--474},
256                    }                    }
257    
258  @Article{gie-kam:98,  @Article{gie-kam:98,
259   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
260   year           = 1998,   year           = 1998,
# Line 207  Line 267 
267  @techreport{gie:99,  @techreport{gie:99,
268   author         = {R. Giering},   author         = {R. Giering},
269   year           = 1999,   year           = 1999,
270   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
271                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
272   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
273   type           = {Report},   type           = {Report},
# Line 216  Line 276 
276                    02139; USA},                    02139; USA},
277   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
278                    }                    }
279    
280  @incollection{gie:00,  @incollection{gie:00,
281   author         = {R. Giering},   author         = {R. Giering},
282   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 240  Line 300 
300   volume         = {45},   volume         = {45},
301   pages          = {407--435},   pages          = {407--435},
302                    }                    }
303    
304  @book{gil-eta:81,  @book{gil-eta:81,
305   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
306   title          = {Practical optimization},   title          = {Practical optimization},
307   year           = 1981,   year           = 1981,
308   publisher      = {Academic Press},   publisher      = {Academic Press},
309   address        = {London},   address        = {London},
310   pages          = {401 pp.},   pages          = {401 pp.},
311                    }                    }
312                                                                      
313    @incollection{gri:89,
314     author         = {A. Griewank},
315     year           = 1989,
316     title          = {On automatic differentiation},
317     booktitle      = {Mathematical Programming: Recent Developments and
318                      Applications},
319     pages          = {83--108},
320     editor         = {M. Iri and K. Tanabe},
321     publisher      = {Kluwer},
322     address        = {Dordrecht, NL},
323                      }
324    
325    @Article{gri:92,
326      author =       {A.~Griewank},
327      title =        {Achieving logarithmic growth of temporal and spatial
328      complexity in reverse {A}utomatic {D}ifferentiation},
329      journal       = {Optimization Methods and Software},
330      year          = {1992},
331      volume        = {1},
332      pages         = {35--54}
333    }
334    
335  @book{gri:00,  @book{gri:00,
336   author         = {A. Griewank},   author         = {A. Griewank},
337   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 258  Line 340 
340   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
341   volume         = {19},   volume         = {19},
342   publisher      = {SIAM},   publisher      = {SIAM},
343   address        = {Philadelphia},   address        = {Philadelphia},
344   pages          = {369 pp.},   pages          = {369 pp.},
345                    }                    }
346                                                                      
347  @Article{hal-eta:82,  @Article{hal-eta:82,
348   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
349   year           = 1982,   year           = 1982,
# Line 271  Line 353 
353   volume         = {39},   volume         = {39},
354   pages          = {2038--3050},   pages          = {2038--3050},
355                    }                    }
356    
357    @Article{Haney,
358      author =       {R.L. Haney},
359      title =        {Surface thermal boundary conditions for ocean
360                      circulation models},
361      journal =      jpo,
362      year =         1971,
363      volume =       1,
364      pages =        {241--248}
365    }
366    
367    @Article{held-suar:94,
368     author         = {I.M. Held and M.J. Suarez},
369     year           = {1994},
370     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
371     journal        = {Bulletin of the American Meteorological Society},
372     volume         = {75(10)},
373     pages          = {1825-1830}
374    }
375    
376  @Article{hil-eta:01,  @Article{hil-eta:01,
377   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
378                    J. Marshall},                    J. Marshall},
379   year           = {2001},   year           = {2002},
380   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
381                    circulation on carbon sequestration},                    circulation on carbon sequestration},
382   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
383   note           = {submitted},   note           = {submitted},
384                    }                    }
385    
386    @ARTICLE{hib80,
387      author =       {Hibler, III, William D.},
388      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
389      JOURNAL     = mwr,
390      YEAR        = 1980,
391      VOLUME      = 1,
392      PAGES       = "1943-1973"
393    }
394    
395    @Article{Holland75,
396     author         = {W.R. Holland and L. B. Lin},
397     year           = {1975a},
398     title          = {On the origin of mesoscale eddies and their contribution
399                       to the general circulation of the ocean. I. A preliminary
400                       numerical experiment},
401     journal        = jpo,
402     volume         = {5},
403     pages          = {642-657}
404                      }
405    
406    @Article{hol-lin:75b,
407     author         = {W.R. Holland and L. B. Lin},
408     year           = {1975b},
409     title          = {On the origin of mesoscale eddies and their contribution
410                       to the general circulation of the ocean. II. A parameter
411                       study},
412     journal        = jpo,
413     volume         = {5},
414     pages          = {658-669}
415                      }
416    
417    @Article{jam-oze:86,
418     author         = {B.M. Jamart and J. Ozer},
419     year           = {1986},
420     title          = {Numerical boundary layers and spurious residual flows},
421     journal        = jgr,
422     volume         = {91},
423     pages          = {10,621-10,631}
424                      }
425    
426  @book{kas-eta:00,  @book{kas-eta:00,
427   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
428                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 297  Line 438 
438  @Article{lar-eta:94,  @Article{lar-eta:94,
439   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
440   year           = 1994,   year           = 1994,
441   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
442   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
443   volume         = {32},   volume         = {32},
444   pages          = {363--403},   pages          = {363--403},
445                    }                    }
446    
447  @Article{lar-eta:97,  @Article{lar-eta:97,
448   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
449                    and J.C. McWilliams},                    and J. C. McWilliams},
450   year           = 1997,   year           = 1997,
451   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
452                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
453   journal        = jpo,   journal        = jpo,
454   volume         = {27},   volume         = {27},
455     number         = 11,
456   pages          = {2418--2447},   pages          = {2418--2447},
457                    }                    }
458    
459  @Article{led-tal:86,  @Article{led-tal:86,
460   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
461   year           = 1986,   year           = 1986,
# Line 326  Line 466 
466   volume         = {38A},   volume         = {38A},
467   pages          = {97--110},   pages          = {97--110},
468                    }                    }
469    
470    @TechReport{lev:94a,
471      author =       {S. Levitus and T.P.Boyer},
472      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
473      institution =  {NOAA Atlas NESDIS 3},
474      year =         1994,
475      OPTkey =       {},
476      OPTtype =      {},
477      OPTnumber =    {},
478      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
479      OPTmonth =     {},
480      OPTnote =      {},
481      OPTannote =    {}
482    }
483    
484    
485    @TechReport{Levitus94,
486      author =       {S. Levitus and T.P.Boyer},
487      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
488      institution =  {NOAA Atlas NESDIS 4},
489      year =         1994,
490      OPTkey =       {},
491      OPTtype =      {},
492      OPTnumber =    {},
493      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
494      OPTmonth =     {},
495      OPTnote =      {},
496      OPTannote =    {}
497    }
498    
499    
500  @Article{lew-der:85,  @Article{lew-der:85,
501   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
502   year           = {1985},   year           = {1985},
# Line 336  Line 506 
506   volume         = {37A},   volume         = {37A},
507   pages          = {309--322},   pages          = {309--322},
508                    }                    }
509    
510  @techreport{lon:88,  @techreport{lon:88,
511   author         = {R.B. Long},   author         = {R.B. Long},
512   year           = 1988,   year           = 1988,
# Line 348  Line 518 
518   pages          = {38 pp.},   pages          = {38 pp.},
519   address        = {Delft (NL)},   address        = {Delft (NL)},
520                    }                    }
521    
522    @ARTICLE{losc-heim:06,
523      author =       {Martin Losch and Patrick Heimbach},
524      title =        {Adjoint Sensitivity of an Ocean General Circulation
525                      Model to Bottom Topography},
526      journal =      jpo,
527      year =         2007,
528      volume =       37,
529      doi =          {10.1175/JPO3017.1},
530      number =       2,
531      pages =        {377--393},
532      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
533    }
534    
535    
536  @Article{maro-wun:93,  @Article{maro-wun:93,
537   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
538   year           = 1993,   year           = 1993,
# Line 359  Line 543 
543   volume         = {98, C11},   volume         = {98, C11},
544   pages          = {20,149--20,167},   pages          = {20,149--20,167},
545                    }                    }
546    
547  @Article{maro-eta:99,  @Article{maro-eta:99,
548   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
549                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
550   year           = 1999,   year           = 1999,
551   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 371  Line 555 
555   volume         = {104, C12},   volume         = {104, C12},
556   pages          = {29,529--29,547},   pages          = {29,529--29,547},
557                    }                    }
558    
559  @Article{mars-eta:97a,  @Article{mars-eta:97a,
560   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
561                    A. Adcroft},                    A. Adcroft},
# Line 382  Line 566 
566   volume         = {102, C3},   volume         = {102, C3},
567   pages          = {5,733--5,752},   pages          = {5,733--5,752},
568                    }                    }
569    
570  @Article{mars-eta:97b,  @Article{mars-eta:97b,
571   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
572                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
573   year           = {1997b},   year           = {1997b},
574   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 393  Line 577 
577   volume         = {102, C3},   volume         = {102, C3},
578   pages          = {5,753--5,766},   pages          = {5,753--5,766},
579                    }                    }
580    
581  @Article{mars-sha:98,  @Article{mars-eta:98,
582   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
583   year           = 1998,   year           = 1998,
584   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 586 
586   journal        = jms,   journal        = jms,
587   volume         = {18},   volume         = {18},
588   pages          = {115--134},   pages          = {115--134},
589     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
590     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
591                    }                    }
592    
593  @Article{mcw:96,  @Article{mol:09,
594   author         = {J. McWilliams},   author         = {Andrea Molod},
595   year           = 1996,   year           = 2009,
596   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
597   journal        = arfm,                     algorithm and tests},
598   volume         = {28},   journal        = tel,
599   pages          = {215--248},   volume         = {61A},
600     pages          = {381--393},
601                    }                    }
602    
603    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
604    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
605    %% (Available from Unidata or in PostScript form by anonymous FTP from
606    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
607    %%   a hypertext version of the User's Guide available at
608    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
609    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
610    %%   also available.
611    
612    @incollection{naum-etal:06,
613            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
614            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
615            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
616            Pages = {~},
617            Publisher = {TU Delft},
618            Title = {Adjoint code by source transformation with OpenAD/F},
619            Year = {2006}}
620    
621    @Article{orl:76,
622     author         = {I. Orlanski},
623     year           = 1976,
624     title          = {A simple boundary condition for unbounded hyperbolic flows},
625     journal        = jcp,
626     volume         = {21},
627     pages          = {251--269},
628                    }
629    
630    @Article{pal-rom:97,
631     author         = {T. Paluszkiewicz and R.D. Romea},
632     year           = 1997,
633     title          = {A one-dimensional model for the parameterization
634                      of deep convection in the ocean},
635     journal        = dao,
636     volume         = {26},
637     pages          = {95--130},
638                      }
639    
640    @TechReport{rew:97,
641      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
642      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
643                      An Interface for Data Access, Version 3},
644      institution =  {Unidata Program Center},
645      type =         {Report},
646      address =      {Boulder, Colorado},
647      year =         1997,
648      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
649    }
650    
651    
652  @Article{res-eta:98,  @Article{res-eta:98,
653   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
654   year           = 1998,   year           = 1998,
655   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
656                    data assimilation studies},                    data assimilation studies},
657   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
658   volume         = {19},   volume         = {19},
659   pages          = {1586--1605},   pages          = {1586--1605},
660                    }                    }
661    
662  @Article{ros-eta:93,  @Article{ros-eta:93,
663   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
664   year           = 1993,   year           = 1993,
# Line 431  Line 667 
667   volume         = {45A},   volume         = {45A},
668   pages          = {558--568},   pages          = {558--568},
669                    }                    }
670    
671  @incollection{she-and:89,  @incollection{she-and:89,
672   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
673   year           = 1989,   year           = 1989,
674   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
675                    technique},                    technique},
676   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
677                    Combining data and dynamics},                    Combining data and dynamics},
# Line 446  Line 682 
682   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
683   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
684                    }                    }
685    
686  @techreport{sta-eta:97,  @article{utke-etal:08,
687            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
688            Date-Modified = {2007-11-19 10:15:08 -0500},
689            Journal = {{ACM} Transactions on Mathematical Software},
690            Pages = {~},
691            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
692            Volume = {34(4)},
693            Year = {2008}}
694    
695    @Article{DaSilva94,
696     author         = {A. da Silva and A. C. Young and S. Levitus},
697     year           = 1994,
698     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
699     journal        = {NOAA Atlas NESDIS},
700     volume         = {6},
701     publisher      = {U.S. Department of Commerce},
702     address        = {Washington, D.C. (USA)},
703     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
704     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
705                      }
706    
707    @techreport{stam-etal:97,
708   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
709                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
710                    C. Hill},                    C. Hill},
711   year           = 1997,   year           = 1997,
712   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
713                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
714                    model},                    model},
715   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 462  Line 719 
719   pages          = {40 pp.},   pages          = {40 pp.},
720   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
721                    }                    }
722    
723  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
724   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
725                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
726                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
727   year           = 2001,    year = {2002a},
728   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
729                    estimated from ocean observations and a general    pages = {3118},
730                    circulation model},    doi   = {10.1029/2001JC000888},
731   journal        = jgr,  }
732   note           = {submitted},  
733    
734    @Article{Stommel66,
735     author         = {H. Stommel},
736     year           = 1948,
737     title          = {The western intensification of wind-driven ocean currents},
738     journal        = {Trans. Am. Geophys. Union},
739     volume         = {29},
740     pages          = {206},
741                    }                    }
742    
743  @Article{tal-cou:87,  @Article{tal-cou:87,
744   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
745   year           = 1987,   year           = 1987,
746   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
747                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
748                    I: Theory},                    I: Theory},
749   journal        = qjrms,   journal        = qjrms,
750   volume         = {113},   volume         = {113},
751   pages          = {1311--1328},   pages          = {1311--1328},
752                    }                    }
753    
754  @Article{tal:97,  @Article{tal:97,
755   author         = {O. Talagrand},   author         = {O. Talagrand},
756   year           = 1997,   year           = 1997,
# Line 494  Line 759 
759   volume         = {75},   volume         = {75},
760   pages          = {191--209},   pages          = {191--209},
761                    }                    }
762    
763  @book{tar:87,  @book{tar:87,
764   author         = {A. Tarantola},   author         = {A. Tarantola},
765   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
766                    and model parameter estimation},                    and model parameter estimation},
767   year           = 1987,   year           = 1987,
768   publisher      = {Elsevier},   publisher      = {Elsevier},
769   address        = {Amsterdam},   address        = {Amsterdam},
770   pages          = {629 pp.},   pages          = {629 pp.},
771                    }                    }
772                                                                      
773  @techreport{tha:87,  @techreport{tha:87,
774   author         = {W.C. Thacker},   author         = {W.C. Thacker},
775   year           = 1987,   year           = 1987,
# Line 516  Line 781 
781   pages          = {64 pp.},   pages          = {64 pp.},
782   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
783                    }                    }
784    
785  @Article{tha-lon:88,  @Article{tha-lon:88,
786   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
787   year           = 1988,   year           = 1988,
# Line 525  Line 790 
790   volume         = {93, C2},   volume         = {93, C2},
791   pages          = {1,227--1,240},   pages          = {1,227--1,240},
792                    }                    }
793    
794  @Article{tha:88,  @Article{tha:88,
795   author         = {W.C. Thacker},   author         = {W.C. Thacker},
796   year           = 1988,   year           = 1988,
# Line 535  Line 800 
800   volume         = {93},   volume         = {93},
801   pages          = {10,655--10,665},   pages          = {10,655--10,665},
802                    }                    }
803    
804  @Article{tha:89,  @Article{tha:89,
805   author         = {W.C. Thacker},   author         = {W.C. Thacker},
806   year           = 1989,   year           = 1989,
# Line 545  Line 810 
810   volume         = {94, C5},   volume         = {94, C5},
811   pages          = {6,177--6,196},   pages          = {6,177--6,196},
812                    }                    }
813    
814  @Article{tha-rag:94,  @Article{tha-rag:94,
815   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
816   year           = 1994,   year           = 1994,
# Line 555  Line 820 
820   volume         = {99, C5},   volume         = {99, C5},
821   pages          = {10,131--10,141},   pages          = {10,131--10,141},
822                    }                    }
823    
824  @Article{tzi-tha:89,  @Article{tzi-tha:89,
825   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
826   year           = {1989},   year           = {1989},
# Line 565  Line 830 
830   volume         = {19},   volume         = {19},
831   pages          = {1471--1485},   pages          = {1471--1485},
832                    }                    }
833    
834  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
835   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
836                    S. Hwang},                    S. Hwang},
# Line 576  Line 841 
841   volume         = {22},   volume         = {22},
842   pages          = {1434--1457},   pages          = {1434--1457},
843                    }                    }
844    
845  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
846   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
847                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 587  Line 852 
852   volume         = {22},   volume         = {22},
853   pages          = {1458--1485},   pages          = {1458--1485},
854                    }                    }
855    
856  @book{wun:96,  @book{wun:96,
857   author         = {C. Wunsch},   author         = {C. Wunsch},
858   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
859   year           = 1996,   year           = 1996,
860   publisher      = cup,   publisher      = cup,
861   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
862   pages          = {442 pp.},   pages          = {442 pp.},
863                    }                    }
864                                                                      
865  @Article{zha-mar:99,  @Article{zha-mar:99,
866   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
867   year           = 1999,   year           = 1999,
# Line 606  Line 871 
871   volume         = {57},   volume         = {57},
872   pages          = {305--334},   pages          = {305--334},
873                    }                    }
874    
875    
876    @InCollection{hill:95,
877      author =       {Hill, C. and J. Marshall},
878      title =        {Application of a Parallel Navier-Stokes Model to
879                      Ocean Circulation in Parallel Computational Fluid
880                      Dynamics},
881      booktitle =    {Implementations and Results Using Parallel
882                      Computers},
883      pages =        {545-552},
884      publisher =    {Elsevier Science B.V.: New York},
885      year =         1995,
886      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
887    }
888    
889    
890    @Article{marshall:97a,
891      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
892      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
893                     modeling},
894      journal =      jgr,
895      year =         1997,
896      volume =       102,
897      number =       {C3},
898      pages =        {5733-5752},
899      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
900    }
901    
902    @Article{marshall:97b,
903      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
904      title =        {A finite-volume, incompressible Navier Stokes model for
905                      studies of the ocean on parallel computers},
906      journal =      jgr,
907      year =         1997,
908      volume =       102,
909      number =       {C3},
910      pages =        {5753-5766},
911      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
912    }
913    
914    @Article{adcroft:97,
915      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
916      title =        {Representation of topography by shaved cells in a height
917                      coordinate ocean model},
918      journal =      mwr,
919      year =         1997,
920      volume =       125,
921      pages =        {2293-2315},
922      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
923      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
924    }
925    
926    @Article{adcroft:04a,
927      author =       {Adcroft, A. and J.-M. Campin},
928      title =        {Re-scaled height coordinates for accurate representation
929                      of free-surface flows in ocean circulation models},
930      journal =      om,
931      year =         2004,
932      volume =       7,
933      pages =        {269-284},
934      doi   =        {10.1016/j.ocemod.2003.09.003},
935    }
936    
937    @Article{adcroft:04b,
938      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
939      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
940                      on the Expanded Spherical Cube},
941      journal =      mwr,
942      year =         2004,
943      volume =       132,
944      pages =        {2845-2863},
945      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
946      doi     =      {10.1175/MWR2823.1},
947    }
948    
949    @inproceedings{adcroft:04c,
950      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
951                      and P. Heimbach},
952      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
953      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
954                     Recent developments in numerical methods for atmosphere and
955                     ocean modelling},
956      year =         2004,
957      pages =        {139-149},
958      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
959     publisher =     ecmwf
960    }
961    
962    @Article{marshall:04,
963      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
964      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
965      journal =      mwr,
966      year =         2004,
967      volume =       132,
968      pages =        {2882-2894},
969      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
970      doi    =       {10.1175/MWR2835.1},
971    }
972    
973    @Article{visbeck:97,
974      author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
975      title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
976      journal =      jpo,
977      year =         1997,
978      volume =       27,
979      number =       3,
980      pages =        {381-402}
981    }
982    
983    @Article{shaw:98,
984      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
985                      and Marshall, J.},
986      title =        {A comparison of implicitly parallel multi-threaded and
987                      data-parallel implementations of an ocean model based
988                      on the Navier-Stokes equations},
989      journal =      {J. of Parallel and Distributed Computing},
990      year =         1998,
991      volume =       48,
992      number =       1,
993      pages =        {1-51}
994    }
995    
996    @Article{mjn:99,
997      author =       {Marshall, J., Jamous, D and J. Nilsson},
998      title =        {Reconciling `thermodynamic' and `dynamic' methods of
999                      computation of water-mass transformation rates},
1000      journal =      {DSR},
1001      year =         1999,
1002      volume =       46,
1003      pages =        {545-572}
1004    }
1005    
1006    @Article{ms:99,
1007      author =       {Marshall, J and F. Schott},
1008      title =        {Open ocean deep convection: observations, models and theory},
1009      journal =      {Rev. Geophys.},
1010      year =         1999,
1011      volume =       37,
1012      number =       1,
1013      pages =        {1-64}
1014    }
1015    
1016    @Article{adcroft:99,
1017      author =       {Adcroft, A., Hill C. and J. Marshall},
1018      title =        {A new treatment of the Coriolis terms in C-grid models
1019                      at both high and low resolutions},
1020      journal =      mwr,
1021      year =         1999,
1022      volume =       127,
1023      pages =        {1928-1936},
1024      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1025      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1026    }
1027    
1028    @InProceedings{hill:99,
1029      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1030      title =        {A Strategy for Terascale Climate Modeling},
1031      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1032      year =         1999,
1033      pages = {406-425},
1034      publisher =    {World Scientific},
1035    }
1036    
1037    @Article{wardle:00,
1038      author =       {Wardle R. and Marshall J.},
1039      title =        {Representation of eddies in primitive equation models by a PV flux},
1040      journal =      jpo,
1041      year =         2000,
1042      volume =       30,
1043      number =       10,
1044      pages =        {2481-2503}
1045    }
1046    
1047    @Article{ac:02,
1048      author =       {Adcroft, A. and J.-M. Campin},
1049      title =        {Comparison of finite volume schemes and direct-space-time
1050                      methods for ocean circulation models},
1051      journal =      om,
1052      year =         2002,
1053      note =         {in preparation}
1054    }
1055    
1056    @Article{adcroft:02,
1057      author =       {Adcroft, A., et~al.},
1058      title =        {Energy conversion in discrete numerical models},
1059      journal =      om,
1060      year =         2002,
1061      note =         {in preparation}
1062    }
1063    
1064    @InCollection{arakawa:77,
1065      author =       {Arakawa, A. and Lamb, V.},
1066      title =        {Computational Design of the Basic Dynamical Processes of
1067                      the UCLA General Circulation Model},
1068      booktitle =    {Methods in Computational Physics},
1069      pages =        {174-267},
1070      publisher =    {Academic Press},
1071      year =         1977,
1072      volume =       17
1073    }
1074    
1075    @Article{miller_white:84,
1076      author =       {Miller, M. J. and White, A. A.},
1077      title =        {On the non-hydrostatic equations in pressure
1078                      and sigma coordiantes},
1079      journal =      qjrms,
1080      year =         1984,
1081      volume =       110,
1082      pages =        {515-533}
1083    }
1084    
1085    @Article{white:89,
1086      author =       {White, A. A.},
1087      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1088      journal =      qjrms,
1089      year =         1989,
1090      volume =       115,
1091      pages =        {1243-1251}
1092    }
1093    
1094    @Article{adcroft:98,
1095      author =       {Adcroft, A. and Marshall, D.},
1096      title =        {How slippery are piecewise-constant coastlines in numerical
1097                      ocean models?},
1098      journal =      {Tellus},
1099      year =         1998,
1100      volume =       50,
1101      number =       1,
1102      pages =        {95-108}
1103    }
1104    
1105    @PhdThesis{adcroft:95,
1106      author =       {Adcroft, A.},
1107      title =        {Numerical Algorithms for use in a Dynamical Model of the
1108                      Ocean},
1109      school =       {Imperial College, London},
1110      year =         1995
1111    }
1112    
1113    @Article{griffies:00,
1114      author =       {Griffies, S.,M. and Hallberg, R.,W.},
1115      title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1116                      use in large-scale eddy-permitting ocean models},
1117      journal =      mwr,
1118      year =         2000,
1119      volume =       128,
1120      number =       8,
1121      pages =        {2935-2946}
1122    }
1123    
1124    @Article{wajsowicz:93,
1125      author =       {Wajsowicz, R.},
1126      title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1127                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1128      journal =      jcp,
1129      year =         1993,
1130      volume =       105,
1131      number =       2,
1132      pages =        {333-338}
1133    }
1134    
1135    @Article{campin:02,
1136      author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1137      title =        {Conservation of properties in a free-surface model},
1138      journal =      om,
1139      year =         2004,
1140      volume =       6,
1141      pages =        {221-244}
1142    }
1143    
1144    @Article{Cox87,
1145      author =       {M. D. Cox},
1146      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1147      journal =      {Ocean modelling},
1148      year =         1987,
1149      volume =       74,
1150      pages =        {1-5 (Unpublished manuscript)}
1151    }
1152    
1153    @Article{gretal:98,
1154      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1155      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1156      journal =      jpo,
1157      year =         1998,
1158      volume =       28,
1159      pages =        {805-830}
1160    }
1161    
1162    @ARTICLE{gr:98,
1163      author =       {S. M. Griffies},
1164      title =        {The {Gent-McWilliams} Skew Flux},
1165      journal =      jpo,
1166      year =         1998,
1167      volume =       28,
1168      pages =        {831-841}
1169    }
1170    
1171    
1172    @Article{gkw:91,
1173      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1174      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1175      journal =      climd,
1176      year =         1991,
1177      volume =       5,
1178      number =       4,
1179      pages =        {211-226},
1180      doi   =        {10.1007/BF00210006}
1181    }
1182    
1183    @Article{dm:95,
1184      author =       {G. Danabasoglu and J. C. McWilliams},
1185      title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1186      journal =      jclim,
1187      year =         1995,
1188      volume =       8,
1189      number =       12,
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1203    @incollection{roe:85,
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1205     year           = 1985,
1206     title          = {Some contributions to the modelling of discontinuous flows},
1207     booktitle      = {Large-Scale Computations in Fluid Mechanics},
1208     series         = {Lectures in Applied Mathematics},
1209     volume         = 22,
1210     pages          = {163-193},
1211     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1212     publisher      = {American Mathematical Society},
1213     address        = {Providence, RI},
1214    }
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1229                      parametrization, {I}: Model climatology and variability in
1230                      multidecadal experiments},
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1239      title =        {An Assessment of the {G}eophysical {F}luid
1240                      {D}ynamics {L}aboratory Ocean Model with Coarse
1241                      Resolution: Annual-Mean Climatology},
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1252                      {N}on-{B}oussinesq Hydrostatic Equations of Motion},
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1260    @Article{jackett95,
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1263                      Achieve Static Stability},
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1266      volume =       12,
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1271    @Article{mcdougall03,
1272      author =       {Trevor J. McDougall and David R. Jackett and Daniel
1273                      G. Wright and Rainer Feistel},
1274      title =        {Accurate and Computationally Efficient Algorithms
1275                      for Potential Temperature and Density of Seawater},
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1284      OPTannote =    {}
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1289      title =        "Algorithms for Computation of Fundamental Properties
1290                      of Seawater",
1291      institution =  "Unesco",
1292      year =         1983,
1293      type =         "Unesco Technical Papers in Marine Science",
1294      number =       44,
1295      pages =        {53 pp.}
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1300                     and D. A. Rothrock",
1301      TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1302      JOURNAL     = jpo,
1303      YEAR        = 1998,
1304      VOLUME      = 28,
1305      PAGES       = "191-217"
1306    }
1307    
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1310      TITLE       = "A model for the thermodynamic growth of sea ice in
1311                     numerical investigations of climate",
1312      JOURNAL     = jpo,
1313      YEAR        = 1976,
1314      VOLUME      = 6,
1315      PAGES       = "379-389"
1316    }
1317    
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1320      TITLE       = "A reformulated three-layer sea ice model",
1321      JOURNAL     = jaot,
1322      YEAR        = 2000,
1323      VOLUME      = 17,
1324      PAGES       = "525-531"
1325    }
1326    
1327    @ARTICLE{hib79,
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1329      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1330      JOURNAL     = jpo,
1331      YEAR        = 1979,
1332      VOLUME      = 9,
1333      PAGES       = "815-846"
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1335    
1336    @ARTICLE{fla92,
1337      AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1338      TITLE       = "Modeling pack ice as a cavitating fluid",
1339      JOURNAL     = jpo,
1340      YEAR        = 1992,
1341      VOLUME      = 22,
1342      PAGES       = "626-651"
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1347      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1348      JOURNAL     = jpo,
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1350      VOLUME      = 27,
1351      PAGES       = "1849--1867"
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1356      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
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1361      pages =        {18--38},
1362      doi =          {10.1006/jcph.2001.6710}
1363    }
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1367      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
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1369      YEAR        = 2000,
1370      VOLUME      = 105,
1371      PAGES       = "3325--3338"
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1382    }
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1385      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1386      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1387                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1388                      in Climate Change Studies, Report 122},
1389      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1390      year =         {2005},
1391      OPTnumber =    {122},
1392      address =      {Cambridge, MA},
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1394    }
1395    
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1398      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1399                      Biogeochemistry Models},
1400      journal =      {Ocean Modeling},
1401      year =         {{in press}},
1402      OPTkey =       {},
1403      OPTvolume =    {},
1404      OPTnumber =    {},
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1410      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
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1412      journal =      {Global Biogeochemical Cycles},
1413      year =         {2004},
1414      OPTkey =       {},
1415      volume =       {18},
1416      number =       {doi:10.1029/2003GB002179},
1417      OPTpages =     {},
1418    }
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1422      title =        {A global wind stress climatology based on ECMWF analyses},
1423      institution =  {NCAR},
1424      year =         {1989},
1425      OPTkey =       {},
1426      OPTtype =      {},
1427      number =       {NCAR/TN-338+STR},
1428      address =      {Boulder, CO},
1429      OPTmonth =     {},
1430    }
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1435      journal =      jgr,
1436      year =         {1992},
1437      OPTkey =       {},
1438      volume =       {97},
1439      OPTnumber =    {},
1440      pages =        {7373--7382},
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1447     title        = {High Resolution Models of the Planetary Boundary Layer.},
1448     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1449     editor       = {Pfafflin and Zeigler},
1450     publisher    = {Gordon and Breach, Scientific Publishers}
1451    }
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1456     title        = {A solar radiation model for use in climate studies.},
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1459     pages        = {762-772}
1460    }
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1469     pages        = {209-217}
1470    }
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1476    for use in general circulation models},
1477     institution  = {National Aeronautics and Space Administration},
1478     type         = {NASA Technical Memorandum},
1479     number       = {104606-Vol 3},
1480     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1481     note         = {http://www.gmao.nasa.gov/}
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1509     pages        = {833-855}
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1525     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1526     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
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1528     pages        = {406-425},
1529     publisher    = {American Meteorological Society}
1530    }
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1540     pages        = {784-806}
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1549     pages        = {91-112}
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1556     institution  = {National Aeronautics and Space Administration},
1557     type         = {NASA Technical Memorandum},
1558     number       = {104538},
1559     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1560     note         = {http://www.gmao.nasa.gov/},
1561    }
1562    
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1565     year         = {1992},
1566     title        = { Modeling the Land Surface Boundary
1567    in Climate Models as a Composite of Independent Vegetation Stands.},
1568     journal      = jgr,
1569     volume       = {97},
1570     pages        = {2697-2715}
1571    }
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1577    in the Earth's atmosphere.  },
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1579     volume       = {31},
1580     pages        = {118-133}
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1586     title        = {Open ocean momentum flux measurements in moderate to strong winds.},
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1588     volume       = {11},
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1596    convection for general circulation models.},
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1598     volume       = {120},
1599     pages        = {978-1002}
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1634    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1635     journal      = mwr,
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1643     title        = {  Dynamical aspects of climate simulations Using the GEOS
1644    General Circulation Model},
1645     institution  = {National Aeronautics and Space Administration},
1646     type         = {NASA Technical Memorandum},
1647     number       = {104606 Volume 10},
1648     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1649     note         = {http://www.gmao.nasa.gov/},
1650    }
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1654     year         = {1974},
1655     title        = {Heat and mass transfer between a rough wall and
1656    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1657     journal      = jfm,
1658     volume       = {62},
1659     pages        = {601-623}
1660    }
1661    
1662    @Article{yam:77,
1663     author       = {T. Yamada},
1664     year         = {1977},
1665     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1666    atmospheric boundary layer.},
1667     journal      = {Atmos. Environ.},
1668     volume       = {11},
1669     pages        = {1015-1024}
1670    }
1671    
1672    @Article{zhouetal:95,
1673     author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1674     year         = {1995},
1675     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1676     journal      = qjrms,
1677     volume       = {122},
1678     pages        = {903-927}
1679    }
1680    
1681    @Article{breth:99,
1682     author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1683                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1684                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1685                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1686     year           = 1999,
1687     title          = {An intercomparison of radiatively driven entrainment and turbulence
1688                      in a smoke cloud, as simulated by different numerical models.},
1689     journal        = qjrms,
1690     volume         = {125},
1691     pages          = {391-423}
1692                      }
1693    
1694    @Article{bm:99,
1695     author         = {A. C. Bushell and G.M. Martin},
1696     year           = 1999,
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1698     journal        = {Climate Dyn.},
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1700     pages          = {293-318}
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1706     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1707                      Implications for the Simulation of the Madden-Julian Oscillation.},
1708     journal        = {Climate Dyn.},
1709     volume         = {17},
1710     pages          = {777-794}
1711                      }
1712    
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1715                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
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1717     title          = {Rules for Interchange of Physical Parameterizations.},
1718     journal        = bams,
1719     volume         = {70},
1720     pages          = {620-622}
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1722    
1723    @Article{wo:98,
1724     author         = {D. Williamson and J.G. Olsen},
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1726     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1727     journal        = mwr,
1728     volume         = {126},
1729     pages          = {991-1000}
1730                      }
1731    
1732    @TechReport{MPI-std-20,
1733      author =       {{Message Passing Interface Forum}},
1734      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1735      institution =  {mpi-forum.org},
1736      year =         {1998},
1737    }
1738    
1739    @Article{cam08,
1740      author =       {Jean-Michel Campin and John Marshall and David
1741                      Ferreira},
1742      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1743                      Coordinate z$^\ast$},
1744      journal =      om,
1745      volume =       24,
1746      number =       {1--2},
1747      pages =        {1--14},
1748      doi =          {10.1016/j.ocemod.2008.05.005},
1749      year =         2008
1750    }
1751    
1752    @Article{geiger98,
1753      author =       {Cathleen A. Geiger and Hibler, III, William D. and
1754                      Stephen F. Ackley},
1755      title =        {Large-Scale Sea Ice Drift and Deformation:
1756                      {C}omparison between Models and Observations in the
1757                      Western {W}eddell {S}ea during 1992},
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1759      year =         1998,
1760      volume =       103,
1761      number =       {C10},
1762      pages =        {21893--21913}
1763    }
1764    
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1766      author =       {Hibler, III, William D.},
1767      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1768                      increases},
1769      booktitle =    {Climate processes and climate sensitivity},
1770      pages =        {238--253},
1771      publisher =    {AGU},
1772      year =         1984,
1773      editor =       {J. E. Hansen and T. Takahashi},
1774      volume =       29,
1775      series =       {Geophysical Monograph},
1776      address =      {Washington, D.C.}
1777    }
1778    
1779    @Article{hibler87,
1780      author =       {Hibler, III, William D. and Kirk Bryan},
1781      title =        {A Diagnostic Ice-Ocean Model},
1782      journal =      jpo,
1783      year =         1987,
1784      volume =       17,
1785      number =       7,
1786      pages =        {987--1015}
1787    }
1788    
1789    @InCollection{hibler95,
1790      author =       {Hibler, III, William D. and Chi F. Ip},
1791      title =        {The effect of sea ice rheology on {A}rcitc buoy
1792                      drift},
1793      booktitle =    {Ice Mechanics},
1794      pages =        {255--264},
1795      publisher =    {Am. Soc. of Mech. Eng.},
1796      year =         1995,
1797      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1798      volume =       204,
1799      series =       {AMD},
1800      address =      {New York}
1801    }
1802    
1803    @Article{hibler97,
1804      author =       {Hibler, III, William D. and Erland M. Schulson},
1805      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1806                      Investigations of Climate},
1807      journal =      angl,
1808      year =         1997,
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1811    }
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1814      author =       {Willem Hundsdorfer and R. A. Trompert},
1815      title =        {Method of Lines and Direct Discretization: a
1816                      Comparison for Linear Advection},
1817      journal =      {Applied Numerical Mathematics},
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1819      volume =       13,
1820      number =       6,
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1822      doi =          {10.1016/0168-9274(94)90009-4}
1823    }
1824    
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1826      author =       {Matti Lepp{\"a}ranta},
1827      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1828                      Thickness in Subarctic Basins},
1829      journal =      {Nordic Hydrology},
1830      year =         1983,
1831      volume =       14,
1832      pages =        {59--70}
1833    }
1834    
1835    @Article{manabe79,
1836      author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
1837      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1838                      Variation for Future Studies of Climate Sensitivity},
1839      journal =      dao,
1840      year =         1979,
1841      volume =       3,
1842      number =       {393--426}
1843    }
1844    
1845    @ARTICLE{menemenlis05,
1846      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1847                      J.-M. Campin and B. Cheng and B. Ciotti and
1848                      I. Fukumori and A. Koehl and P. Heimbach and
1849                      C. Henze and T. Lee and D. Stammer and J. Taft and
1850                      J. Zhang},
1851      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1852                      Climate Research},
1853      journal =      eos,
1854      year =         2005,
1855      volume =       86,
1856      number =       9,
1857      pages =        {89, 95--96}
1858    }
1859    
1860    @Article{parkinson79,
1861      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1862      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1863      journal =      jgr,
1864      year =         1979,
1865      month =        jan,
1866      volume =       84,
1867      number =       {C1},
1868      pages =        {311--337},
1869      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1870      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1871                      System}
1872    }
1873    
1874    @Article{semtner84,
1875      author =       {Semtner, Jr., Albert J.},
1876      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1877                      Ice in Studies of Climatic Change},
1878      journal =      cch,
1879      year =         1984,
1880      volume =       6,
1881      number =       1,
1882      pages =        {27--37}
1883    }
1884    
1885    @Article{zhang97,
1886      author =       {Jinlun Zhang and Hibler, III, William D.},
1887      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1888      journal =      jgr,
1889      year =         1997,
1890      volume =       102,
1891      number =       {C4},
1892      pages =        {8691--8702}
1893    }
1894    
1895    @Article{zhang03,
1896      author =       {Jinlun Zhang and Drew A. Rothrock},
1897      title =        {Modeling Global Sea Ice with a Thickness and
1898                      Enthalpy Distribution Model in Generalized
1899                      Curvilinear Coordinates},
1900      journal =      mwr,
1901      year =         2003,
1902      volume =       131,
1903      number =       5,
1904      pages =        {845--861}
1905    }
1906    
1907    @Article{beckmann99,
1908      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1909                      Timmermann},
1910      title =        {A Numerical Model of the {W}eddell {S}ea:
1911                      Large-Scale Circulation and Water Mass Distribution},
1912      journal =      jgr,
1913      year =         1999,
1914      volume =       104,
1915      number =       {C10},
1916      pages =        {23,375--23,392}
1917    }
1918    
1919    @Article{grosfeld97,
1920      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1921                      Determann},
1922      title =        {Thermohaline Circulation and Interaction between Ice
1923                      Shelf Cavities and the Adjacent Open Water},
1924      journal =      jgr,
1925      year =         1997,
1926      volume =       102,
1927      number =       {C7},
1928      pages =        {15,595--15,610}
1929    }
1930    
1931    @Article{hellmer89,
1932      author =       {Hartmut H. Hellmer and Dirk J. Olbers},
1933      title =        {A Two-Dimensional Model of the Thermohaline
1934                      Circulation Under an Ice Shelf},
1935      journal =      {Antarct. Sci.},
1936      year =         1989,
1937      volume =       1,
1938      pages =        {325--336}
1939    }
1940    
1941    @Article{holland99,
1942      author =       {David M. Holland and Adrian Jenkins},
1943      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
1944                      Base of an Ice Shelf},
1945      journal =      jpo,
1946      year =         1999,
1947      volume =       29,
1948      number =       8,
1949      pages =        {1787--1800}
1950    }
1951    
1952    @Article{jenkins01,
1953      author =       {Adrian Jenkins and Hartmut H. Hellmer and David
1954                      M. Holland},
1955      title =        {The Role of Meltwater Advection in the Formulation
1956                      of Conservative Boundary Conditions at an Ice-Ocean
1957                      Interface},
1958      journal =      jpo,
1959      year =         2001,
1960      volume =       31,
1961      pages =        {285--296}}
1962    
1963    @Article{losch08,
1964      author =       {Martin Losch},
1965      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
1966                      General Circulation Model},
1967      journal =      jgr,
1968      year =         2008,
1969      volume =       113,
1970      number =       {C08043},
1971      doi =          {10.1029/2007JC004368}
1972    }
1973    
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1977        and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
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1980        and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
1981     year           = 2002,
1982     title          = {Evaluation of ocean model ventilation with CFC-11:
1983                       comparison of 13 global ocean models},
1984     journal        = om,
1985     volume         = {4},          number= {},             month   = {},
1986     pages          = {89-120}
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1988    
1989    @Article{marsh06,
1990     author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
1991     year           = 2006,
1992     title          = {Estimates and Implications of Surface Eddy Diffusivity
1993                       in the Southern Ocean Derived from Tracer Transport},
1994     journal        = jpo,
1995     volume         = {36},          number= {},             month   = {},
1996     pages          = {1806-1821}
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1998    
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2000      author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
2001      title =        {A Personal Supercomputer for Climate Research},
2002      booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
2003      year =         1999,
2004      pages = {10.1109/SC.1999},
2005      publisher =    {IEEE},
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2007    
2008    @Article{stevens:90,
2009      author =       {Stevens, D. P.},
2010      title =        {On Open Boundary Conditions for Three Dimensional
2011                      Primitive Equation Ocean Circulation Models},
2012      journal =      {Geophys. Astrophys. Fl. Dyn.},
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2018      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
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2020                      M. Iredell and S. Saha and G. White and J. Woollen
2021                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2022                      W. Higgins and J. Janowiak and K. C. Mo and
2023                      C. Ropelewski and J. Wang and A. Leetmaa and
2024                      R. Reynolds and R. Jenne and D. Joseph},
2025      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2026      journal =      bams,
2027      year =         1996,
2028      volume =       77,
2029      pages =        {437--471}
2030    }
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