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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.35 by jmc, Sat Apr 25 13:16:04 2009 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
15  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
16    @string{om      = {Ocean Modelling}}
17  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
18  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
19  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 67  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 114  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{durr:91,
135      author = {Dale R. Durran},
136      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
137               to Leapfrog Time Differencing},
138      journal = mwr,
139      year = {1991},
140      volume = {119},
141      pages  = {702-720},
142    }
143    
144    
145    @ARTICLE{dutk-etal:06,
146      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
147      title = {Controls on ocean productivity and air-sea carbon flux:
148               An adjoint model sensitivity study},
149      journal = grl,
150      year = {2006},
151      volume = {33},
152      pages  = {L02603},
153      doi    = {10.1029/2005GL024987},
154    }
155    
156  @Article{err:97,  @Article{err:97,
157   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 175  Line 213 
213   note           = {in press},   note           = {in press},
214                    }                    }
215    
216    @Article{fer-eta:05,
217     author         = {D. Ferreira and J. Marshall and P. Heimbach},
218     year           = 2005,
219     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
220                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
221     journal        = jpo,
222     volume         = {35},
223     pages          = {1891--1910},
224                      }
225    
226  @Article{gen-mcw:90,  @Article{gen-mcw:90,
227   author         = {P.R. Gent and J.C. McWilliams},   author         = {P.R. Gent and J.C. McWilliams},
228   year           = 1990,   year           = 1990,
# Line 250  Line 298 
298   pages          = {401 pp.},   pages          = {401 pp.},
299                    }                    }
300                                                                        
301    @incollection{gri:89,
302     author         = {A. Griewank},
303     year           = 1989,
304     title          = {On automatic differentiation},
305     booktitle      = {Mathematical Programming: Recent Developments and
306                      Applications},
307     pages          = {83--108},
308     editor         = {M. Iri and K. Tanabe},
309     publisher      = {Kluwer},
310     address        = {Dordrecht, NL},
311                      }
312    
313    @Article{gri:92,
314      author =       {A.~Griewank},
315      title =        {Achieving logarithmic growth of temporal and spatial
316      complexity in reverse {A}utomatic {D}ifferentiation},
317      journal       = {Optimization Methods and Software},
318      year          = {1992},
319      volume        = {1},
320      pages         = {35--54}
321    }
322    
323  @book{gri:00,  @book{gri:00,
324   author         = {A. Griewank},   author         = {A. Griewank},
325   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 271  Line 341 
341   volume         = {39},   volume         = {39},
342   pages          = {2038--3050},   pages          = {2038--3050},
343                    }                    }
344    
345    @Article{Haney,
346      author =       {R.L. Haney},
347      title =        {Surface thermal boundary conditions for ocean
348                      circulation models},
349      journal =      jpo,
350      year =         1971,
351      volume =       1,
352      pages =        {241--248}
353    }
354    
355    @Article{held-suar:94,
356     author         = {I.M. Held and M.J. Suarez},
357     year           = {1994},
358     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
359     journal        = {Bulletin of the American Meteorological Society},
360     volume         = {75(10)},
361     pages          = {1825-1830}
362    }
363    
364  @Article{hil-eta:01,  @Article{hil-eta:01,
365   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
366                    J. Marshall},                    J. Marshall},
367   year           = {2001},   year           = {2002},
368   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
369                    circulation on carbon sequestration},                    circulation on carbon sequestration},
370   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
371   note           = {submitted},   note           = {submitted},
372                    }                    }
373    
374    @ARTICLE{hib80,
375      AUTHOR      = "W. D. {Hibler, III}",
376      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
377      JOURNAL     = mwr,
378      YEAR        = 1980,
379      VOLUME      = 1,
380      PAGES       = "1943-1973"
381    }
382    
383    @Article{Holland75,
384     author         = {W.R. Holland and L. B. Lin},
385     year           = {1975a},
386     title          = {On the origin of mesoscale eddies and their contribution
387                       to the general circulation of the ocean. I. A preliminary
388                       numerical experiment},
389     journal        = jpo,
390     volume         = {5},
391     pages          = {642-657}
392                      }
393    
394    @Article{hol-lin:75b,
395     author         = {W.R. Holland and L. B. Lin},
396     year           = {1975b},
397     title          = {On the origin of mesoscale eddies and their contribution
398                       to the general circulation of the ocean. II. A parameter
399                       study},
400     journal        = jpo,
401     volume         = {5},
402     pages          = {658-669}
403                      }
404    
405    @Article{jam-oze:86,
406     author         = {B.M. Jamart and J. Ozer},
407     year           = {1986},
408     title          = {Numerical boundary layers and spurious residual flows},
409     journal        = jgr,
410     volume         = {91},
411     pages          = {10,621-10,631}
412                      }
413    
414  @book{kas-eta:00,  @book{kas-eta:00,
415   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
416                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 326  Line 455 
455   volume         = {38A},   volume         = {38A},
456   pages          = {97--110},   pages          = {97--110},
457                    }                    }
458    
459    @TechReport{lev:94a,
460      author =       {S. Levitus and T.P.Boyer},
461      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
462      institution =  {NOAA Atlas NESDIS 3},
463      year =         1994,
464      OPTkey =       {},
465      OPTtype =      {},
466      OPTnumber =    {},
467      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
468      OPTmonth =     {},
469      OPTnote =      {},
470      OPTannote =    {}
471    }
472    
473    
474    @TechReport{Levitus94,
475      author =       {S. Levitus and T.P.Boyer},
476      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
477      institution =  {NOAA Atlas NESDIS 4},
478      year =         1994,
479      OPTkey =       {},
480      OPTtype =      {},
481      OPTnumber =    {},
482      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
483      OPTmonth =     {},
484      OPTnote =      {},
485      OPTannote =    {}
486    }
487    
488    
489  @Article{lew-der:85,  @Article{lew-der:85,
490   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
# Line 348  Line 507 
507   pages          = {38 pp.},   pages          = {38 pp.},
508   address        = {Delft (NL)},   address        = {Delft (NL)},
509                    }                    }
510    
511    @ARTICLE{losc-heim:06,
512      author = {M. Losch and P. Heimbach},
513      title = {Adjoint sensitivity of an ocean general circulation model
514               to bottom topography},
515      journal = jpo,
516      year = {2006},
517      volume = {{in press}},
518      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
519    }
520    
521    
522  @Article{maro-wun:93,  @Article{maro-wun:93,
523   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 394  Line 564 
564   pages          = {5,753--5,766},   pages          = {5,753--5,766},
565                    }                    }
566    
567  @Article{mars-sha:98,  @Article{mars-eta:98,
568   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
569   year           = 1998,   year           = 1998,
570   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 572 
572   journal        = jms,   journal        = jms,
573   volume         = {18},   volume         = {18},
574   pages          = {115--134},   pages          = {115--134},
575     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
576     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
577                    }                    }
578    
579  @Article{mcw:96,  @Article{mcw:96,
# Line 412  Line 584 
584   volume         = {28},   volume         = {28},
585   pages          = {215--248},   pages          = {215--248},
586                    }                    }
587    
588    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
589    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
590    %% (Available from Unidata or in PostScript form by anonymous FTP from
591    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
592    %%   a hypertext version of the User's Guide available at
593    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
594    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
595    %%   also available.
596    
597    @incollection{naum-etal:06,
598            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
599            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
600            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
601            Pages = {~},
602            Publisher = {TU Delft},
603            Title = {Adjoint code by source transformation with OpenAD/F},
604            Year = {2006}}
605    
606    @TechReport{rew:97,
607      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
608      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
609                      An Interface for Data Access, Version 3},
610      institution =  {Unidata Program Center},
611      type =         {Report},
612      address =      {Boulder, Colorado},
613      year =         1997,
614      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
615    }
616    
617    
618  @Article{res-eta:98,  @Article{res-eta:98,
619   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
620   year           = 1998,   year           = 1998,
621   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
622                    data assimilation studies},                    data assimilation studies},
623   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
624   volume         = {19},   volume         = {19},
# Line 446  Line 648 
648   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
649   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
650                    }                    }
651    
652    @article{utke-etal:08,
653            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
654            Date-Modified = {2007-11-19 10:15:08 -0500},
655            Journal = {{ACM} Transactions on Mathematical Software},
656            Pages = {~},
657            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
658            Volume = {34(4)},
659            Year = {2008}}
660    
661    @Article{DaSilva94,
662     author         = {A. da Silva and A. C. Young and S. Levitus},
663     year           = 1994,
664     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
665     journal        = {NOAA Atlas NESDIS},
666     volume         = {6},
667     publisher      = {U.S. Department of Commerce},
668     address        = {Washington, D.C. (USA)},
669     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
670     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
671                      }
672    
673  @techreport{sta-eta:97,  @techreport{stam-etal:97,
674   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
675                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
676                    C. Hill},                    C. Hill},
677   year           = 1997,   year           = 1997,
678   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
# Line 463  Line 686 
686   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
687                    }                    }
688    
689  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
690   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
691                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
692                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
693   year           = 2001,    year = {2002a},
694   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
695                    estimated from ocean observations and a general    pages = {3118},
696                    circulation model},    doi   = {10.1029/2001JC000888},
697   journal        = jgr,  }
698   note           = {submitted},  
699    
700    @Article{Stommel66,
701     author         = {H. Stommel},
702     year           = 1948,
703     title          = {The western intensification of wind-driven ocean currents},
704     journal        = {Trans. Am. Geophys. Union},
705     volume         = {29},
706     pages          = {206},
707                    }                    }
708    
709  @Article{tal-cou:87,  @Article{tal-cou:87,
# Line 606  Line 837 
837   volume         = {57},   volume         = {57},
838   pages          = {305--334},   pages          = {305--334},
839                    }                    }
840    
841    
842    @InCollection{hill:95,
843      author =       {Hill, C. and J. Marshall},
844      title =        {Application of a Parallel Navier-Stokes Model to
845                      Ocean Circulation in Parallel Computational Fluid
846                      Dynamics},
847      booktitle =    {Implementations and Results Using Parallel
848                      Computers},
849      pages =        {545-552},
850      publisher =    {Elsevier Science B.V.: New York},
851      year =         1995,
852      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
853    }
854    
855    
856    @Article{marshall:97a,
857      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
858      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
859                     modeling},
860      journal =      jgr,
861      year =         1997,
862      volume =       102,
863      number =       {C3},
864      pages =        {5733-5752},
865      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
866    }
867    
868    @Article{marshall:97b,
869      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
870      title =        {A finite-volume, incompressible Navier Stokes model for
871                      studies of the ocean on parallel computers},
872      journal =      jgr,
873      year =         1997,
874      volume =       102,
875      number =       {C3},
876      pages =        {5753-5766},
877      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
878    }
879    
880    @Article{adcroft:97,
881      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
882      title =        {Representation of topography by shaved cells in a height
883                      coordinate ocean model},
884      journal =      mwr,
885      year =         1997,
886      volume =       125,
887      pages =        {2293-2315},
888      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
889      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
890    }
891    
892    @Article{adcroft:04a,
893      author =       {Adcroft, A. and J.-M. Campin},
894      title =        {Re-scaled height coordinates for accurate representation
895                      of free-surface flows in ocean circulation models},
896      journal =      om,
897      year =         2004,
898      volume =       7,
899      pages =        {269-284},
900      doi   =        {10.1016/j.ocemod.2003.09.003},
901    }
902    
903    @Article{adcroft:04b,
904      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
905      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
906                      on the Expanded Spherical Cube},
907      journal =      mwr,
908      year =         2004,
909      volume =       132,
910      pages =        {2845-2863},
911      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
912      doi     =      {10.1175/MWR2823.1},
913    }
914    
915    @inproceedings{adcroft:04c,
916      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
917                      and P. Heimbach},
918      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
919      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
920                     Recent developments in numerical methods for atmosphere and
921                     ocean modelling},
922      year =         2004,
923      pages =        {139-149},
924      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
925     publisher =     ecmwf
926    }
927    
928    @Article{marshall:04,
929      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
930      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
931      journal =      mwr,
932      year =         2004,
933      volume =       132,
934      pages =        {2882-2894},
935      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
936      doi    =       {10.1175/MWR2835.1},
937    }
938    
939    @Article{visbeck:97,
940      author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
941      title =        {Specification of eddy transfer coefficients in
942                      coarse-resolution ocean circulation models},
943      journal =      jpo,
944      year =         1997,
945      volume =       27,
946      number =       3,
947      pages =        {381-402}
948    }
949    
950    @Article{shaw:98,
951      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
952                      and Marshall, J.},
953      title =        {A comparison of implicitly parallel multi-threaded and
954                      data-parallel implementations of an ocean model based
955                      on the Navier-Stokes equations},
956      journal =      {J. of Parallel and Distributed Computing},
957      year =         1998,
958      volume =       48,
959      number =       1,
960      pages =        {1-51}
961    }
962    
963    @Article{mjn:99,
964      author =       {Marshall, J., Jamous, D and J. Nilsson},
965      title =        {Reconciling `thermodynamic' and `dynamic' methods of
966                      computation of water-mass transformation rates},
967      journal =      {DSR},
968      year =         1999,
969      volume =       46,
970      pages =        {545-572}
971    }
972    
973    @Article{ms:99,
974      author =       {Marshall, J and F. Schott},
975      title =        {Open ocean deep convection: observations, models and theory},
976      journal =      {Rev. Geophys.},
977      year =         1999,
978      volume =       37,
979      number =       1,
980      pages =        {1-64}
981    }
982    
983    @Article{adcroft:99,
984      author =       {Adcroft, A., Hill C. and J. Marshall},
985      title =        {A new treatment of the Coriolis terms in C-grid models
986                      at both high and low resolutions},
987      journal =      mwr,
988      year =         1999,
989      volume =       127,
990      pages =        {1928-1936},
991      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
992      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
993    }
994    
995    @InProceedings{hill:99,
996      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
997      title =        {A Strategy for Terascale Climate Modeling},
998      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
999      year =         1999,
1000      pages = {406-425},
1001      publisher =    {World Scientific},
1002    }
1003    
1004    @Article{wardle:00,
1005      author =       {Wardle R. and Marshall J.},
1006      title =        {Representation of eddies in primitive equation models by a PV flux},
1007      journal =      jpo,
1008      year =         2000,
1009      volume =       30,
1010      number =       10,
1011      pages =        {2481-2503}
1012    }
1013    
1014    @Article{ac:02,
1015      author =       {Adcroft, A. and J.-M. Campin},
1016      title =        {Comparison of finite volume schemes and direct-space-time
1017                      methods for ocean circulation models},
1018      journal =      om,
1019      year =         2002,
1020      note =         {in preparation}
1021    }
1022    
1023    @Article{adcroft:02,
1024      author =       {Adcroft, A., et~al.},
1025      title =        {Energy conversion in discrete numerical models},
1026      journal =      om,
1027      year =         2002,
1028      note =         {in preparation}
1029    }
1030    
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1033      title =        {Computational Design of the Basic Dynamical Processes of
1034                      the UCLA General Circulation Model},
1035      booktitle =    {Methods in Computational Physics},
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1037      publisher =    {Academic Press},
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1044      title =        {On the non-hydrostatic equations in pressure
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1046      journal =      qjrms,
1047      year =         1984,
1048      volume =       110,
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1053      author =       {White, A. A.},
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1057      volume =       115,
1058      pages =        {1243-1251}
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1060    
1061    @Article{adcroft:98,
1062      author =       {Adcroft, A. and Marshall, D.},
1063      title =        {How slippery are piecewise-constant coastlines in numerical
1064                      ocean models?},
1065      journal =      {Tellus},
1066      year =         1998,
1067      volume =       50,
1068      number =       1,
1069      pages =        {95-108}
1070    }
1071    
1072    @PhdThesis{adcroft:95,
1073      author =       {Adcroft, A.},
1074      title =        {Numerical Algorithms for use in a Dynamical Model of the
1075                      Ocean},
1076      school =       {Imperial College, London},
1077      year =         1995
1078    }
1079    
1080    @Article{griffies:00,
1081      author =       {Griffies, S.,M. and Hallberg, R.,W.},
1082      title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1083                      use in large-scale eddy-permitting ocean models},
1084      journal =      mwr,
1085      year =         2000,
1086      volume =       128,
1087      number =       8,
1088      pages =        {2935-2946}
1089    }
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1091    @Article{wajsowicz:93,
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1093      title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1094                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
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1099      pages =        {333-338}
1100    }
1101    
1102    @Article{campin:02,
1103      author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1104      title =        {Conservation of properties in a free-surface model},
1105      journal =      om,
1106      year =         2004,
1107      volume =       6,
1108      pages =        {221-244}
1109    }
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1111    @Article{dm:95,
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1113      title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
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1115      year =         1995,
1116      volume =       8,
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1121    @Article{ldd:97,
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1123      title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1124      journal =      jpo,
1125      year =         1997,
1126      volume =       27,
1127      number =       11,
1128      pages =        {2418-2447}
1129    }
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1131    @Article{gkw:99,
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1133      title =        {Mechanisms for spreading of Mediterranean water in
1134                      coarse-resolution numerical models},
1135      journal =      jpo,
1136      year =         1999,
1137      volume =       29,
1138      number =       8,
1139      pages =        {1682-1700}
1140    }
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1142    @incollection{roe:85,
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1144     year           = 1985,
1145     title          = {Some contributions to the modelling of discontinuous flows},
1146     booktitle      = {Large-Scale Computations in Fluid Mechanics},
1147     series         = {Lectures in Applied Mathematics},
1148     volume         = 22,
1149     pages          = {163-193},
1150     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1151     publisher      = {American Mathematical Society},
1152     address        = {Providence, RI},
1153    }
1154    
1155    @Article{trenberth90,
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1157      title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind
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1165    @Article{molteni:03,
1166      author =       {F. Molteni},
1167      title =        {Atmospheric simulations using a {GCM} with simplified physical
1168                      parametrization, {I}: Model climatology and variability in
1169                      multidecadal experiments},
1170      journal =      climd,
1171      year =         2003,
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1176    @Article{jiang99,
1177      author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
1178      title =        {An Assessment of the {G}eophysical {F}luid
1179                      {D}ynamics {L}aboratory Ocean Model with Coarse
1180                      Resolution: Annual-Mean Climatology},
1181      journal =      jgr,
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1183      volume =       104,
1184      number =       {C11},
1185      pages =        {25,623--25,645}
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1188    @Article{szoeke02,
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1191                      {N}on-{B}oussinesq Hydrostatic Equations of Motion},
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1210    @Article{mcdougall03,
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1230      institution =  "Unesco",
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1232      type =         "Unesco Technical Papers in Marine Science",
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1234      pages =        {53 pp.}
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1286      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1287      JOURNAL     = jpo,
1288      YEAR        = 1997,
1289      VOLUME      = 27,
1290      PAGES       = "1849-1867"
1291    }
1292    
1293    @ARTICLE{zha00,
1294      AUTHOR      = "Jinlun Zhang and Drew Rothrock",
1295      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1296      JOURNAL     = jgr,
1297      YEAR        = 2000,
1298      VOLUME      = 105,
1299      PAGES       = "3325-3338"
1300    }
1301    
1302    @Article{Shapiro_70,
1303      author =       {Shapiro, R.},
1304      title =        {Smoothing, filtering, and boundary effects},
1305      journal =      {Reviews of Geophysics and Space Physics},
1306      year =         {1970},
1307      volume =       {8},
1308      number =       {2},
1309      pages =        {359--387},
1310    }
1311    
1312    @TechReport{Dutkiewicz_etal_05,
1313      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1314      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1315                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1316                      in Climate Change Studies, Report 122},
1317      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1318      year =         {2005},
1319      OPTnumber =    {122},
1320      address =      {Cambridge, MA},
1321      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1322    }
1323    
1324    @Article{Follows_etal_05,
1325      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1326      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1327                      Biogeochemistry Models},
1328      journal =      {Ocean Modeling},
1329      year =         {{in press}},
1330      OPTkey =       {},
1331      OPTvolume =    {},
1332      OPTnumber =    {},
1333      OPTpages =     {},
1334    }
1335    
1336    @Article{McKinley_etal_04,
1337      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1338      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1339                      Equatorial Pacific and the North Atlantic},
1340      journal =      {Global Biogeochemical Cycles},
1341      year =         {2004},
1342      OPTkey =       {},
1343      volume =       {18},
1344      number =       {doi:10.1029/2003GB002179},
1345      OPTpages =     {},
1346    }
1347    
1348    @TechReport{Trenberth_etal_89,
1349      author =       {K. Trenberth and J. Olson and W. Large},
1350      title =        {A global wind stress climatology based on ECMWF analyses},
1351      institution =  {NCAR},
1352      year =         {1989},
1353      OPTkey =       {},
1354      OPTtype =      {},
1355      number =       {NCAR/TN-338+STR},
1356      address =      {Boulder, CO},
1357      OPTmonth =     {},
1358    }
1359    
1360    @Article{Wanninkhof_92,
1361      author =       {R. Wanninkhof},
1362      title =        {Relationship between wind speed and gas exchange over the ocean},
1363      journal =      jgr,
1364      year =         {1992},
1365      OPTkey =       {},
1366      volume =       {97},
1367      OPTnumber =    {},
1368      pages =        {7373--7382},
1369      OPTmonth =     {},
1370    }
1371    
1372    @incollection{black:77,
1373     author       = {A. K. Blackadar},
1374     year         = {1977},
1375     title        = {High Resolution Models of the Planetary Boundary Layer.},
1376     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1377     editor       = {Pfafflin and Zeigler},
1378     publisher    = {Gordon and Breach, Scientific Publishers}
1379    }
1380    
1381    @Article{chou:92,
1382     author       = {M-D. Chou},
1383     year         = {1992},
1384     title        = {A solar radiation model for use in climate studies.},
1385     journal      = jas,
1386     volume       = {49},
1387     pages        = {762-772}
1388    }
1389    
1390    @Article{chou:90,
1391     author       = {M-D. Chou},
1392     year         = {1990},
1393     title        = {Parameterizations for the absorption of solar radiation
1394                       by O$_2$ and CO$_2$ with applications to climate studies.},
1395     journal      = jclim,
1396     volume       = {3},
1397     pages        = {209-217}
1398    }
1399    
1400    @techreport{chsz:94,
1401     author       = {M.-D. Chou and M.J.Suarez},
1402     year         = {1994},
1403     title        = {An efficient thermal infrared radiation parameterization
1404    for use in general circulation models},
1405     institution  = {National Aeronautics and Space Administration},
1406     type         = {NASA Technical Memorandum},
1407     number       = {104606-Vol 3},
1408     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1409     note         = {http://www.gmao.nasa.gov/}
1410    }
1411    
1412    @Article{clarke:70,
1413     author       = {R. H. Clarke},
1414     year         = {1970},
1415     title        = {Observational studies in the atmospheric boundary layer.},
1416     journal      = qjrms,
1417     volume       = {96},
1418     pages        = {91-114}
1419    }
1420    
1421    @Article{deftow:94,
1422     author       = { R. S. Defries and J. R. G. Townshend},
1423     year         = {1994},
1424     title        = {NDVI-derived Land Cover Classification at Global Scales. },
1425     journal      = {Int'l J. Rem. Sens.} ,
1426     volume       = {15},
1427     pages        = {3567-3586}
1428    }
1429    
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1432     year         = {1989},
1433     title        = {A global climatology of albedo, roughness length and stomatal
1434    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1435     journal      = jam,
1436     volume       = {28},
1437     pages        = {833-855}
1438    }
1439    
1440    @Article{helflab:88,
1441     author       = { H. M. Helfand and J. C. Labraga},
1442     year         = {1988},
1443     title        = { Design of a non-singular level 2.5 second-order closure
1444    model for the prediction of atmospheric turbulence. },
1445     journal      = jas,
1446     volume       = {45},
1447     pages        = {113-132}
1448    }
1449    
1450    @inproceedings{helfetal:91,
1451     author       = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1452     year         = {1991},
1453     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1454     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1455     year         = 1991,
1456     pages        = {406-425},
1457     publisher    = {American Meteorological Society}
1458    }
1459    
1460    @Article{helfschu:95,
1461     author       = {H. M. Helfand and S. D. Schubert},
1462     year         = {1995},
1463     title        = { Climatology of the
1464    Simulated Great Plains Low-Level Jet and Its contribution to the
1465    Continental Moisture Budget of the United States. },
1466     journal      = jclim,
1467     volume       = {8},
1468     pages        = {784-806}
1469    }
1470    
1471    @Article{kondo:75,
1472     author       = {J. Kondo},
1473     year         = {1975},
1474     title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
1475     journal      = blm,
1476     volume       = {9},
1477     pages        = {91-112}
1478    }
1479    
1480    @techreport{ks:91,
1481     author       = { Randal D. Koster and Max J. Suarez},
1482     year         = {1991},
1483     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1484     institution  = {National Aeronautics and Space Administration},
1485     type         = {NASA Technical Memorandum},
1486     number       = {104538},
1487     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1488     note         = {http://www.gmao.nasa.gov/},
1489    }
1490    
1491    @Article{ks:92,
1492     author       = { Randal D. Koster and Max J. Suarez},
1493     year         = {1992},
1494     title        = { Modeling the Land Surface Boundary
1495    in Climate Models as a Composite of Independent Vegetation Stands.},
1496     journal      = jgr,
1497     volume       = {97},
1498     pages        = {2697-2715}
1499    }
1500    
1501    @Article{lhans:74,
1502     author       = {A. A. Lacis and J. E. Hansen},
1503     year         = {1974},
1504     title        = { A parameterization for the absorption of solar radiation
1505    in the Earth's atmosphere.  },
1506     journal      = jas,
1507     volume       = {31},
1508     pages        = {118-133}
1509    }
1510    
1511    @Article{larpond:81,
1512     author       = {W. G. Large and S. Pond},
1513     year         = {1981},
1514     title        = {Open ocean momentum flux measurements in moderate to strong winds.},
1515     journal      = jpo,
1516     volume       = {11},
1517     pages        = {324-336}
1518    }
1519    
1520    @Article{moorsz:92,
1521     author       = {S. Moorthi and M. J. Suarez},
1522     year         = {1992},
1523     title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1524    convection for general circulation models.},
1525     journal      = mwr,
1526     volume       = {120},
1527     pages        = {978-1002}
1528    }
1529    
1530    @incollection{pano:73,
1531     author       = {H. A. Panofsky},
1532     year         = {1973},
1533     title        = {Tower Micrometeorology. },
1534     booktitle    = {Workshop on Micrometeorology},
1535     editor       = {D. A. Haugen},
1536     publisher    = {American Meteorological Society}
1537    }
1538    
1539    @Article{reynetal:94,
1540     author       = {R. W. Reynolds and T. M. Smith},
1541     year         = {1994},
1542     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1543     journal      = jclim,
1544     volume       = {7},
1545     pages        = {929-948}
1546    }
1547    
1548    @Article{rosen:87,
1549     author       = {J. E. Rosenfield and M. R. Schoeberl and M. A. Geller},
1550     year         = {1987},
1551     title        = {  A computation of the stratospheric
1552    diabatic circulation using an accurate radiative transfer model},
1553     journal      = jas,
1554     volume       = {44},
1555     pages        = {859-876}
1556    }
1557    
1558    @Article{sudm:88,
1559     author       = {Y. C. Sud and A. Molod},
1560     year         = {1988},
1561     title        = {  The roles of dry convection, cloud-radiation feedback processes
1562    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1563     journal      = mwr,
1564     volume       = {116},
1565     pages        = {2366-2387}
1566    }
1567    
1568    @techreport{taksz:96,
1569     author       = {L. L. Takacs and M.J. Suarez},
1570     year         = {1996},
1571     title        = {  Dynamical aspects of climate simulations Using the GEOS
1572    General Circulation Model},
1573     institution  = {National Aeronautics and Space Administration},
1574     type         = {NASA Technical Memorandum},
1575     number       = {104606 Volume 10},
1576     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1577     note         = {http://www.gmao.nasa.gov/},
1578    }
1579    
1580    @Article{yagkad:74,
1581     author       = {A. M. Yaglom and B. A. Kader},
1582     year         = {1974},
1583     title        = {Heat and mass transfer between a rough wall and
1584    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1585     journal      = jfm,
1586     volume       = {62},
1587     pages        = {601-623}
1588    }
1589    
1590    @Article{yam:77,
1591     author       = {T. Yamada},
1592     year         = {1977},
1593     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1594    atmospheric boundary layer.},
1595     journal      = {Atmos. Environ.},
1596     volume       = {11},
1597     pages        = {1015-1024}
1598    }
1599    
1600    @Article{zhouetal:95,
1601     author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1602     year         = {1995},
1603     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1604     journal      = qjrms,
1605     volume       = {122},
1606     pages        = {903-927}
1607    }
1608    
1609    @Article{breth:99,
1610     author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1611                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1612                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1613                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1614     year           = 1999,
1615     title          = {An intercomparison of radiatively driven entrainment and turbulence
1616                      in a smoke cloud, as simulated by different numerical models.},
1617     journal        = qjrms,
1618     volume         = {125},
1619     pages          = {391-423}
1620                      }
1621    
1622    @Article{bm:99,
1623     author         = {A. C. Bushell and G.M. Martin},
1624     year           = 1999,
1625     title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1626     journal        = {Climate Dyn.},
1627     volume         = {15},
1628     pages          = {293-318}
1629                      }
1630    
1631    @Article{Inn:01,
1632     author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1633     year           = 2001,
1634     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1635                      Implications for the Simulation of the Madden-Julian Oscillation.},
1636     journal        = {Climate Dyn.},
1637     volume         = {17},
1638     pages          = {777-794}
1639                      }
1640    
1641    @Article{kal:89,
1642     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1643                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1644     year           = 1989,
1645     title          = {Rules for Interchange of Physical Parameterizations.},
1646     journal        = bams,
1647     volume         = {70},
1648     pages          = {620-622}
1649                      }
1650    
1651    @Article{wo:98,
1652     author         = {D. Williamson and J.G. Olsen},
1653     year           = 1998,
1654     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1655     journal        = mwr,
1656     volume         = {126},
1657     pages          = {991-1000}
1658                      }
1659    @TechReport{MPI-std-20,
1660      author =       {{Message Passing Interface Forum}}},
1661      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1662      institution =  {mpi-forum.org},
1663      year =         {1998},
1664    }
1665    
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