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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.26 by edhill, Tue Apr 4 18:33:52 2006 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
15  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
16    @string{om      = {Ocean Modelling}}
17  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
18  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
19  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 250  Line 254 
254   pages          = {401 pp.},   pages          = {401 pp.},
255                    }                    }
256                                                                        
257    @incollection{gri:89,
258     author         = {A. Griewank},
259     year           = 1989,
260     title          = {On automatic differentiation},
261     booktitle      = {Mathematical Programming: Recent Developments and
262                      Applications},
263     pages          = {83--108},
264     editor         = {M. Iri and K. Tanabe},
265     publisher      = {Kluwer},
266     address        = {Dordrecht, NL},
267                      }
268    
269    @Article{gri:92,
270      author =       {A.~Griewank},
271      title =        {Achieving logarithmic growth of temporal and spatial
272      complexity in reverse {A}utomatic {D}ifferentiation},
273      journal       = {Optimization Methods and Software},
274      year          = {1992},
275      volume        = {1},
276      pages         = {35--54}
277    }
278    
279  @book{gri:00,  @book{gri:00,
280   author         = {A. Griewank},   author         = {A. Griewank},
281   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 271  Line 297 
297   volume         = {39},   volume         = {39},
298   pages          = {2038--3050},   pages          = {2038--3050},
299                    }                    }
300    
301    @Article{Haney,
302      author =       {R.L. Haney},
303      title =        {Surface thermal boundary conditions for ocean
304                      circulation models},
305      journal =      jpo,
306      year =         1971,
307      volume =       1,
308      pages =        {241--248}
309    }
310    
311    @Article{held-suar:94,
312     author         = {I.M. Held and M.J. Suarez},
313     year           = {1994},
314     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
315     journal        = {Bulletin of the American Meteorological Society},
316     volume         = {75(10)},
317     pages          = {1825-1830}
318    }
319    
320  @Article{hil-eta:01,  @Article{hil-eta:01,
321   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
322                    J. Marshall},                    J. Marshall},
323   year           = {2001},   year           = {2002},
324   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
325                    circulation on carbon sequestration},                    circulation on carbon sequestration},
326   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
327   note           = {submitted},   note           = {submitted},
328                    }                    }
329    
330    @ARTICLE{hib80,
331      AUTHOR      = "W. D. {Hibler, III}",
332      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
333      JOURNAL     = mwr,
334      YEAR        = 1980,
335      VOLUME      = 1,
336      PAGES       = "1943-1973"
337    }
338    
339    @Article{Holland75,
340     author         = {W.R. Holland and L. B. Lin},
341     year           = {1975a},
342     title          = {On the origin of mesoscale eddies and their contribution
343                       to the general circulation of the ocean. I. A preliminary
344                       numerical experiment},
345     journal        = jpo,
346     volume         = {5},
347     pages          = {642-657}
348                      }
349    
350    @Article{hol-lin:75b,
351     author         = {W.R. Holland and L. B. Lin},
352     year           = {1975b},
353     title          = {On the origin of mesoscale eddies and their contribution
354                       to the general circulation of the ocean. II. A parameter
355                       study},
356     journal        = jpo,
357     volume         = {5},
358     pages          = {658-669}
359                      }
360    
361  @book{kas-eta:00,  @book{kas-eta:00,
362   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
363                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 326  Line 402 
402   volume         = {38A},   volume         = {38A},
403   pages          = {97--110},   pages          = {97--110},
404                    }                    }
405    
406    @TechReport{lev:94a,
407      author =       {S. Levitus and T.P.Boyer},
408      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
409      institution =  {NOAA Atlas NESDIS 3},
410      year =         1994,
411      OPTkey =       {},
412      OPTtype =      {},
413      OPTnumber =    {},
414      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
415      OPTmonth =     {},
416      OPTnote =      {},
417      OPTannote =    {}
418    }
419    
420    
421    @TechReport{Levitus94,
422      author =       {S. Levitus and T.P.Boyer},
423      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
424      institution =  {NOAA Atlas NESDIS 4},
425      year =         1994,
426      OPTkey =       {},
427      OPTtype =      {},
428      OPTnumber =    {},
429      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
430      OPTmonth =     {},
431      OPTnote =      {},
432      OPTannote =    {}
433    }
434    
435    
436  @Article{lew-der:85,  @Article{lew-der:85,
437   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
# Line 412  Line 518 
518   volume         = {28},   volume         = {28},
519   pages          = {215--248},   pages          = {215--248},
520                    }                    }
521    
522    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
523    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
524    %% (Available from Unidata or in PostScript form by anonymous FTP from
525    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
526    %%   a hypertext version of the User's Guide available at
527    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
528    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
529    %%   also available.
530    
531    @TechReport{rew:97,
532      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
533      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
534                      An Interface for Data Access, Version 3},
535      institution =  {Unidata Program Center},
536      type =         {Report},
537      address =      {Boulder, Colorado},
538      year =         1997,
539      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
540    }
541    
542    
543  @Article{res-eta:98,  @Article{res-eta:98,
544   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
545   year           = 1998,   year           = 1998,
546   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
547                    data assimilation studies},                    data assimilation studies},
548   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
549   volume         = {19},   volume         = {19},
# Line 446  Line 573 
573   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
574   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
575                    }                    }
576    
577    @Article{DaSilva94,
578     author         = {A. da Silva and A. C. Young and S. Levitus},
579     year           = 1994,
580     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
581     journal        = {NOAA Atlas NESDIS},
582     volume         = {6},
583     publisher      = {U.S. Department of Commerce},
584     address        = {Washington, D.C. (USA)},
585     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
586                      }
587    
588  @techreport{sta-eta:97,  @techreport{sta-eta:97,
589   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
590                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
591                    C. Hill},                    C. Hill},
592   year           = 1997,   year           = 1997,
593   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
# Line 472  Line 610 
610                    estimated from ocean observations and a general                    estimated from ocean observations and a general
611                    circulation model},                    circulation model},
612   journal        = jgr,   journal        = jgr,
613   note           = {submitted},   note           = {in press},
614                      }
615    
616    @Article{Stommel66,
617     author         = {H. Stommel},
618     year           = 1948,
619     title          = {The western intensification of wind-driven ocean currents},
620     journal        = {Trans. Am. Geophys. Union},
621     volume         = {29},
622     pages          = {206},
623                    }                    }
624    
625  @Article{tal-cou:87,  @Article{tal-cou:87,
# Line 606  Line 753 
753   volume         = {57},   volume         = {57},
754   pages          = {305--334},   pages          = {305--334},
755                    }                    }
756    
757    
758    @InCollection{hill:95,
759      author =       {Hill, C. and J. Marshall},
760      title =        {Application of a Parallel Navier-Stokes Model to
761                      Ocean Circulation in Parallel Computational Fluid
762                      Dynamics},
763      booktitle =    {Implementations and Results Using Parallel
764                      Computers},
765      pages =        {545-552},
766      publisher =    {Elsevier Science B.V.: New York},
767      year =         1995,
768      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
769    }
770    
771    
772    @Article{marshall:97a,
773      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
774      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
775                     modeling},
776      journal =      jgr,
777      year =         1997,
778      volume =       102,
779      number =       {C3},
780      pages =        {5733-5752}
781    }
782    
783    @Article{marshall:97b,
784      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
785      title =        {A finite-volume, incompressible Navier Stokes model for
786                      studies of the ocean on parallel computers},
787      journal =      jgr,
788      year =         1997,
789      volume =       102,
790      number =       {C3},
791      pages =        {5753-5766}
792    }
793    
794    @Article{adcroft:97,
795      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
796      title =        {Representation of topography by shaved cells in a height
797                      coordinate ocean model},
798      journal =      mwr,
799      year =         1997,
800      volume =       125,
801      pages =        {2293-2315}
802    }
803    
804    @Article{adcroft:04a,
805      author =       {Adcroft, A. and J.-M. Campin},
806      title =        {Re-scaled height coordinates for accurate representation
807                      of free-surface flows in ocean circulation models},
808      journal =      om,
809      year =         2004,
810      volume =       7,
811      pages =        {269-284}
812    }
813    
814    @Article{adcroft:04b,
815      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
816      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
817                      on the Expanded Spherical Cube},
818      journal =      mwr,
819      year =         2004,
820      volume =       132,
821      pages =        {2845-2863}
822    }
823    
824    @Article{marshall:04,
825      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
826      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
827      journal =      mwr,
828      year =         2004,
829      volume =       132,
830      pages =        {2882-2894}
831    }
832    
833    @Article{visbeck:97,
834      author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
835      title =        {Specification of eddy transfer coefficients in
836                      coarse-resolution ocean circulation models},
837      journal =      jpo,
838      year =         1997,
839      volume =       27,
840      number =       3,
841      pages =        {381-402}
842    }
843    
844    @Article{shaw:98,
845      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
846                      and Marshall, J.},
847      title =        {A comparison of implicitly parallel multi-threaded and
848                      data-parallel implementations of an ocean model based
849                      on the Navier-Stokes equations},
850      journal =      {J. of Parallel and Distributed Computing},
851      year =         1998,
852      volume =       48,
853      number =       1,
854      pages =        {1-51}
855    }
856    
857    @Article{marshall:98,
858      author =       {J. Marshall and H. Jones and C. Hill},
859      title =        {Efficient ocean modeling using non-hydrostatic algorithms},
860      journal =      {JMR},
861      year =         1998,
862      volume =       18,
863      pages =        {115-134}
864    }
865    
866    @Article{mjn:99,
867      author =       {Marshall, J., Jamous, D and J. Nilsson},
868      title =        {Reconciling `thermodynamic' and `dynamic' methods of
869                      computation of water-mass transformation rates},
870      journal =      {DSR},
871      year =         1999,
872      volume =       46,
873      pages =        {545-572}
874    }
875    
876    @Article{ms:99,
877      author =       {Marshall, J and F. Schott},
878      title =        {Open ocean deep convection: observations, models and theory},
879      journal =      {Rev. Geophys.},
880      year =         1999,
881      volume =       37,
882      number =       1,
883      pages =        {1-64}
884    }
885    
886    @Article{adcroft:99,
887      author =       {Adcroft, A., Hill C. and J. Marshall},
888      title =        {A new treatment of the Coriolis terms in C-grid models
889                      at both high and low resolutions},
890      journal =      mwr,
891      year =         1999,
892      volume =       127,
893      pages =        {1928-1936}
894    }
895    
896    @InProceedings{hill:99,
897      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
898      title =        {A Strategy for Terascale Climate Modeling},
899      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
900      year =         1999,
901      pages = {406-425},
902      publisher =    {World Scientific},
903    }
904    
905    @Article{wardle:00,
906      author =       {Wardle R. and Marshall J.},
907      title =        {Representation of eddies in primitive equation models by a PV flux},
908      journal =      jpo,
909      year =         2000,
910      volume =       30,
911      number =       10,
912      pages =        {2481-2503}
913    }
914    
915    @Article{ac:02,
916      author =       {Adcroft, A. and J.-M. Campin},
917      title =        {Comparison of finite volume schemes and direct-space-time
918                      methods for ocean circulation models},
919      journal =      om,
920      year =         2002,
921      note =         {in preparation}
922    }
923    
924    @Article{adcroft:02,
925      author =       {Adcroft, A., et~al.},
926      title =        {Energy conversion in discrete numerical models},
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975      title =        {Numerical Algorithms for use in a Dynamical Model of the
976                      Ocean},
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1170      JOURNAL     = jpo,
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1176    @ARTICLE{fla92,
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1221      address =      {Cambridge, MA},
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1229      journal =      {Ocean Modeling},
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1253      year =         {1989},
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1256      number =       {NCAR/TN-338+STR},
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1280    }
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1288     pages        = {762-772}
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1308     number       = {104606-Vol 3},
1309     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1385     institution  = {National Aeronautics and Space Administration},
1386     type         = {NASA Technical Memorandum},
1387     number       = {104538},
1388     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1389     note         = {http://www.gmao.nasa.gov/},
1390    }
1391    
1392    @Article{ks:92,
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1394     year         = {1992},
1395     title        = { Modeling the Land Surface Boundary
1396    in Climate Models as a Composite of Independent Vegetation Stands.},
1397     journal      = jgr,
1398     volume       = {97},
1399     pages        = {2697-2715}
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1405     title        = { A parameterization for the absorption of solar radiation
1406    in the Earth's atmosphere.  },
1407     journal      = jas,
1408     volume       = {31},
1409     pages        = {118-133}
1410    }
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1416     journal      = jpo,
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1419    }
1420    
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1425    convection for general circulation models.},
1426     journal      = mwr,
1427     volume       = {120},
1428     pages        = {978-1002}
1429    }
1430    
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1434     title        = {Tower Micrometeorology. },
1435     booktitle    = {Workshop on Micrometeorology},
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1437     publisher    = {American Meteorological Society}
1438    }
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1444     journal      = jclim,
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1447    }
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1451     year         = {1987},
1452     title        = {  A computation of the stratospheric
1453    diabatic circulation using an accurate radiative transfer model},
1454     journal      = jas,
1455     volume       = {44},
1456     pages        = {859-876}
1457    }
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1461     year         = {1988},
1462     title        = {  The roles of dry convection, cloud-radiation feedback processes
1463    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1464     journal      = mwr,
1465     volume       = {116},
1466     pages        = {2366-2387}
1467    }
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1470     author       = {L. L. Takacs and M.J. Suarez},
1471     year         = {1996},
1472     title        = {  Dynamical aspects of climate simulations Using the GEOS
1473    General Circulation Model},
1474     institution  = {National Aeronautics and Space Administration},
1475     type         = {NASA Technical Memorandum},
1476     number       = {104606 Volume 10},
1477     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1478     note         = {http://www.gmao.nasa.gov/},
1479    }
1480    
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1483     year         = {1974},
1484     title        = {Heat and mass transfer between a rough wall and
1485    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1486     journal      = jfm,
1487     volume       = {62},
1488     pages        = {601-623}
1489    }
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1493     year         = {1977},
1494     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1495    atmospheric boundary layer.},
1496     journal      = {Atmos. Environ.},
1497     volume       = {11},
1498     pages        = {1015-1024}
1499    }
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1503     year         = {1995},
1504     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1505     journal      = qjrms,
1506     volume       = {122},
1507     pages        = {903-927}
1508    }
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1512                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1513                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
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1517                      in a smoke cloud, as simulated by different numerical models.},
1518     journal        = qjrms,
1519     volume         = {125},
1520     pages          = {391-423}
1521                      }
1522    
1523    @Article{bm:99,
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1527     journal        = {Climate Dyn.},
1528     volume         = {15},
1529     pages          = {293-318}
1530                      }
1531    
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1534     year           = 2001,
1535     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1536                      Implications for the Simulation of the Madden-Julian Oscillation.},
1537     journal        = {Climate Dyn.},
1538     volume         = {17},
1539     pages          = {777-794}
1540                      }
1541    
1542    @Article{kal:89,
1543     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1544                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1545     year           = 1989,
1546     title          = {Rules for Interchange of Physical Parameterizations.},
1547     journal        = bams,
1548     volume         = {70},
1549     pages          = {620-622}
1550                      }
1551    
1552    @Article{wo:98,
1553     author         = {D. Williamson and J.G. Olsen},
1554     year           = 1998,
1555     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1556     journal        = mwr,
1557     volume         = {126},
1558     pages          = {991-1000}
1559                      }
1560    @TechReport{MPI-std-20,
1561      author =       {{Message Passing Interface Forum}}},
1562      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1563      institution =  {mpi-forum.org},
1564      year =         {1998},
1565    }
1566    

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