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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.23 by molod, Tue Aug 2 21:14:16 2005 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
# Line 10  Line 11 
11  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
12  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
13  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
14    @string{om      = {Ocean Modelling}}
15  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
16  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
17  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 250  Line 252 
252   pages          = {401 pp.},   pages          = {401 pp.},
253                    }                    }
254                                                                        
255    @incollection{gri:89,
256     author         = {A. Griewank},
257     year           = 1989,
258     title          = {On automatic differentiation},
259     booktitle      = {Mathematical Programming: Recent Developments and
260                      Applications},
261     pages          = {83--108},
262     editor         = {M. Iri and K. Tanabe},
263     publisher      = {Kluwer},
264     address        = {Dordrecht, NL},
265                      }
266    
267    @Article{gri:92,
268      author =       {A.~Griewank},
269      title =        {Achieving logarithmic growth of temporal and spatial
270      complexity in reverse {A}utomatic {D}ifferentiation},
271      journal       = {Optimization Methods and Software},
272      year          = {1992},
273      volume        = {1},
274      pages         = {35--54}
275    }
276    
277  @book{gri:00,  @book{gri:00,
278   author         = {A. Griewank},   author         = {A. Griewank},
279   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 271  Line 295 
295   volume         = {39},   volume         = {39},
296   pages          = {2038--3050},   pages          = {2038--3050},
297                    }                    }
298    
299    @Article{Haney,
300      author =       {R.L. Haney},
301      title =        {Surface thermal boundary conditions for ocean
302                      circulation models},
303      journal =      jpo,
304      year =         1971,
305      volume =       1,
306      pages =        {241--248}
307    }
308    
309    @Article{held-suar:94,
310     author         = {I.M. Held and M.J. Suarez},
311     year           = {1994},
312     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
313     journal        = {Bulletin of the American Meteorological Society},
314     volume         = {75(10)},
315     pages          = {1825-1830}
316    }
317    
318  @Article{hil-eta:01,  @Article{hil-eta:01,
319   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
320                    J. Marshall},                    J. Marshall},
321   year           = {2001},   year           = {2002},
322   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
323                    circulation on carbon sequestration},                    circulation on carbon sequestration},
324   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
325   note           = {submitted},   note           = {submitted},
326                    }                    }
327    
328    @ARTICLE{hib80,
329      AUTHOR      = "W. D. {Hibler, III}",
330      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
331      JOURNAL     = mwr,
332      YEAR        = 1980,
333      VOLUME      = 1,
334      PAGES       = "1943-1973"
335    }
336    
337    @Article{Holland75,
338     author         = {W.R. Holland and L. B. Lin},
339     year           = {1975a},
340     title          = {On the origin of mesoscale eddies and their contribution
341                       to the general circulation of the ocean. I. A preliminary
342                       numerical experiment},
343     journal        = jpo,
344     volume         = {5},
345     pages          = {642-657}
346                      }
347    
348    @Article{hol-lin:75b,
349     author         = {W.R. Holland and L. B. Lin},
350     year           = {1975b},
351     title          = {On the origin of mesoscale eddies and their contribution
352                       to the general circulation of the ocean. II. A parameter
353                       study},
354     journal        = jpo,
355     volume         = {5},
356     pages          = {658-669}
357                      }
358    
359  @book{kas-eta:00,  @book{kas-eta:00,
360   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
361                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 326  Line 400 
400   volume         = {38A},   volume         = {38A},
401   pages          = {97--110},   pages          = {97--110},
402                    }                    }
403    
404    @TechReport{lev:94a,
405      author =       {S. Levitus and T.P.Boyer},
406      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
407      institution =  {NOAA Atlas NESDIS 3},
408      year =         1994,
409      OPTkey =       {},
410      OPTtype =      {},
411      OPTnumber =    {},
412      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
413      OPTmonth =     {},
414      OPTnote =      {},
415      OPTannote =    {}
416    }
417    
418    
419    @TechReport{Levitus94,
420      author =       {S. Levitus and T.P.Boyer},
421      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
422      institution =  {NOAA Atlas NESDIS 4},
423      year =         1994,
424      OPTkey =       {},
425      OPTtype =      {},
426      OPTnumber =    {},
427      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
428      OPTmonth =     {},
429      OPTnote =      {},
430      OPTannote =    {}
431    }
432    
433    
434  @Article{lew-der:85,  @Article{lew-der:85,
435   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
# Line 412  Line 516 
516   volume         = {28},   volume         = {28},
517   pages          = {215--248},   pages          = {215--248},
518                    }                    }
519    
520    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
521    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
522    %% (Available from Unidata or in PostScript form by anonymous FTP from
523    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
524    %%   a hypertext version of the User's Guide available at
525    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
526    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
527    %%   also available.
528    
529    @TechReport{rew:97,
530      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
531      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
532                      An Interface for Data Access, Version 3},
533      institution =  {Unidata Program Center},
534      type =         {Report},
535      address =      {Boulder, Colorado},
536      year =         1997,
537      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
538    }
539    
540    
541  @Article{res-eta:98,  @Article{res-eta:98,
542   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
543   year           = 1998,   year           = 1998,
544   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
545                    data assimilation studies},                    data assimilation studies},
546   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
547   volume         = {19},   volume         = {19},
# Line 446  Line 571 
571   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
572   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
573                    }                    }
574    
575    @Article{DaSilva94,
576     author         = {A. da Silva and A. C. Young and S. Levitus},
577     year           = 1994,
578     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
579     journal        = {NOAA Atlas NESDIS},
580     volume         = {6},
581     publisher      = {U.S. Department of Commerce},
582     address        = {Washington, D.C. (USA)},
583     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
584                      }
585    
586  @techreport{sta-eta:97,  @techreport{sta-eta:97,
587   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
588                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
589                    C. Hill},                    C. Hill},
590   year           = 1997,   year           = 1997,
591   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
# Line 472  Line 608 
608                    estimated from ocean observations and a general                    estimated from ocean observations and a general
609                    circulation model},                    circulation model},
610   journal        = jgr,   journal        = jgr,
611   note           = {submitted},   note           = {in press},
612                      }
613    
614    @Article{Stommel66,
615     author         = {H. Stommel},
616     year           = 1948,
617     title          = {The western intensification of wind-driven ocean currents},
618     journal        = {Trans. Am. Geophys. Union},
619     volume         = {29},
620     pages          = {206},
621                    }                    }
622    
623  @Article{tal-cou:87,  @Article{tal-cou:87,
# Line 606  Line 751 
751   volume         = {57},   volume         = {57},
752   pages          = {305--334},   pages          = {305--334},
753                    }                    }
754    
755    
756    @InCollection{hill:95,
757      author =       {Hill, C. and J. Marshall},
758      title =        {Application of a Parallel Navier-Stokes Model to
759                      Ocean Circulation in Parallel Computational Fluid
760                      Dynamics},
761      booktitle =    {Implementations and Results Using Parallel
762                      Computers},
763      pages =        {545-552},
764      publisher =    {Elsevier Science B.V.: New York},
765      year =         1995,
766      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
767    }
768    
769    
770    @Article{marshall:97a,
771      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
772      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
773                     modeling},
774      journal =      {JGR},
775      year =         1997,
776      volume =       102,
777      number =       {C3},
778      pages =        {5733-5752}
779    }
780    
781    @Article{marshall:97b,
782      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
783      title =        {A finite-volume, incompressible Navier Stokes model for
784                      studies of the ocean on parallel computers},
785      journal =      {JGR},
786      year =         1997,
787      volume =       102,
788      number =       {C3},
789      pages =        {5753-5766}
790    }
791    
792    @Article{adcroft:97,
793      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
794      title =        {Representation of topography by shaved cells in a height
795                      coordinate ocean model},
796      journal =      {MWR},
797      year =         1997,
798      volume =       125,
799      pages =        {2293-2315}
800    }
801    
802    @Article{adcroft:04a,
803      author =       {Adcroft, A. and J.-M. Campin},
804      title =        {Re-scaled height coordinates for accurate representation
805                      of free-surface flows in ocean circulation models},
806      journal =      om,
807      year =         2004,
808      volume =       7,
809      pages =        {269-284}
810    }
811    
812    @Article{adcroft:04b,
813      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
814      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
815                      on the Expanded Spherical Cube},
816      journal =      mwr,
817      year =         2004,
818      volume =       132,
819      pages =        {2845-2863}
820    }
821    
822    @Article{marshall:04,
823      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
824      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
825      journal =      mwr,
826      year =         2004,
827      volume =       132,
828      pages =        {2882-2894}
829    }
830    
831    @Article{visbeck:97,
832      author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
833      title =        {Specification of eddy transfer coefficients in
834                      coarse-resolution ocean circulation models},
835      journal =      {JPO},
836      year =         1997,
837      volume =       27,
838      number =       3,
839      pages =        {381-402}
840    }
841    
842    @Article{shaw:98,
843      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
844                      and Marshall, J.},
845      title =        {A comparison of implicitly parallel multi-threaded and
846                      data-parallel implementations of an ocean model based
847                      on the Navier-Stokes equations},
848      journal =      {J. of Parallel and Distributed Computing},
849      year =         1998,
850      volume =       48,
851      number =       1,
852      pages =        {1-51}
853    }
854    
855    @Article{marshall:98,
856      author =       {J. Marshall and H. Jones and C. Hill},
857      title =        {Efficient ocean modeling using non-hydrostatic algorithms},
858      journal =      {JMR},
859      year =         1998,
860      volume =       18,
861      pages =        {115-134}
862    }
863    
864    @Article{mjn:99,
865      author =       {Marshall, J., Jamous, D and J. Nilsson},
866      title =        {Reconciling `thermodynamic' and `dynamic' methods of
867                      computation of water-mass transformation rates},
868      journal =      {DSR},
869      year =         1999,
870      volume =       46,
871      pages =        {545-572}
872    }
873    
874    @Article{ms:99,
875      author =       {Marshall, J and F. Schott},
876      title =        {Open ocean deep convection: observations, models and theory},
877      journal =      {Rev. Geophys.},
878      year =         1999,
879      volume =       37,
880      number =       1,
881      pages =        {1-64}
882    }
883    
884    @Article{adcroft:99,
885      author =       {Adcroft, A., Hill C. and J. Marshall},
886      title =        {A new treatment of the Coriolis terms in C-grid models
887                      at both high and low resolutions},
888      journal =      {MWR},
889      year =         1999,
890      volume =       127,
891      pages =        {1928-1936}
892    }
893    
894    @InProceedings{hill:99,
895      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
896      title =        {A Strategy for Terascale Climate Modeling},
897      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
898      year =         1999,
899      pages = {406-425},
900      publisher =    {World Scientific},
901    }
902    
903    @Article{wardle:00,
904      author =       {Wardle R. and Marshall J.},
905      title =        {Representation of eddies in primitive equation models by a PV flux},
906      journal =      {JPO},
907      year =         2000,
908      volume =       30,
909      number =       10,
910      pages =        {2481-2503}
911    }
912    
913    @Article{ac:02,
914      author =       {Adcroft, A. and J.-M. Campin},
915      title =        {Comparison of finite volume schemes and direct-space-time
916                      methods for ocean circulation models},
917      journal =      om,
918      year =         2002,
919      note =         {in preparation}
920    }
921    
922    @Article{adcroft:02,
923      author =       {Adcroft et al.},
924      title =        {Energy conversion in discrete numerical models},
925      journal =      om,
926      year =         2002,
927      note =         {in preparation}
928    }
929    
930    @InCollection{arakawa:77,
931      author =       {Arakawa, A. and Lamb, V.},
932      title =        {Computational Design of the Basic Dynamical Processes of
933                      the UCLA General Circulation Model},
934      booktitle =    {Methods in Computational Physics},
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951    
952    @PhdThesis{adcroft:95,
953      author =       {Adcroft, A.},
954      title =        {Numerical Algorithms for use in a Dynamical Model of the
955                      Ocean},
956      school =       {Imperial College, London},
957      year =         1995
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959    
960    @Article{griffies:00,
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963                      use in large-scale eddy-permitting ocean models},
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974                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
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1022    @incollection{roe:85,
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1024     year           = 1985,
1025     title          = {Some contributions to the modelling of discontinuous flows},
1026     booktitle      = {Large-Scale Computations in Fluid Mechanics},
1027     series         = {Lectures in Applied Mathematics},
1028     volume         = 22,
1029     pages          = {163-193},
1030     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
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1032     address        = {Providence, RI},
1033    }
1034    
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1048                      parametrization, I model climatology and variability in
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1090    @Article{mcdougall03,
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1092                      G. Wright and Rainer Feistel},
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1099      OPTnumber =    {},
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1102      OPTnote =      {{\textup{In press}}},
1103      OPTannote =    {}
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1108      title =        "Algorithms for Computation of Fundamental Properties
1109                      of Seawater",
1110      institution =  "Unesco",
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1112      type =         "Unesco Technical Papers in Marine Science",
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1114      pages =        {53 pp.}
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1119                     and D. A. Rothrock",
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1121      JOURNAL     = jpo,
1122      YEAR        = 1998,
1123      VOLUME      = 28,
1124      PAGES       = "191-217"
1125    }
1126    
1127    @ARTICLE{sem76,
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1129      TITLE       = "A model for the thermodynamic growth of sea ice in
1130                     numerical investigations of climate",
1131      JOURNAL     = jpo,
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1133      VOLUME      = 6,
1134      PAGES       = "379-389"
1135    }
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1140      JOURNAL     = jaot,
1141      YEAR        = 2000,
1142      VOLUME      = 17,
1143      PAGES       = "525-531"
1144    }
1145    
1146    @ARTICLE{hib79,
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1148      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1149      JOURNAL     = jpo,
1150      YEAR        = 1979,
1151      VOLUME      = 9,
1152      PAGES       = "815-846"
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1154    
1155    @ARTICLE{fla92,
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1157      TITLE       = "Modeling pack ice as a cavitating fluid",
1158      JOURNAL     = jpo,
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1160      VOLUME      = 22,
1161      PAGES       = "626-651"
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1166      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
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1169      VOLUME      = 27,
1170      PAGES       = "1849-1867"
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1173    @ARTICLE{zha00,
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1175      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
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1177      YEAR        = 2000,
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1179      PAGES       = "3325-3338"
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1194      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1195                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
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1197      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1198      year =         {2005},
1199      OPTnumber =    {122},
1200      address =      {Cambridge, MA},
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1202    }
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1207                      Biogeochemistry Models},
1208      journal =      {Ocean Modeling},
1209      year =         {{in press}},
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1220      journal =      {Global Biogeochemical Cycles},
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1230      title =        {A global wind stress climatology based on ECMWF analyses},
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1235      number =       {NCAR/TN-338+STR},
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1244      year =         {1992},
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1259    }
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1267     pages        = {762-772}
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1286     type         = {NASA Technical Memorandum},
1287     number       = {104606-Vol 3},
1288     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1333     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
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1336     pages        = {406-425},
1337     publisher    = {American Meteorological Society}
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1365     type         = {NASA Technical Memorandum},
1366     number       = {104538},
1367     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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