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revision 1.1 by heimbach, Thu Oct 4 19:27:24 2001 UTC revision 1.15 by edhill, Mon Aug 30 21:45:44 2004 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
# Line 10  Line 11 
11  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
12  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
13  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
14    @string{om      = {Ocean Modelling}}
15  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
16  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
17  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 250  Line 252 
252   pages          = {401 pp.},   pages          = {401 pp.},
253                    }                    }
254                                                                        
255    @incollection{gri:89,
256     author         = {A. Griewank},
257     year           = 1989,
258     title          = {On automatic differentiation},
259     booktitle      = {Mathematical Programming: Recent Developments and
260                      Applications},
261     pages          = {83--108},
262     editor         = {M. Iri and K. Tanabe},
263     publisher      = {Kluwer},
264     address        = {Dordrecht, NL},
265                      }
266    
267    @Article{gri:92,
268      author =       {A.~Griewank},
269      title =        {Achieving logarithmic growth of temporal and spatial
270      complexity in reverse {A}utomatic {D}ifferentiation},
271      journal       = {Optimization Methods and Software},
272      year          = {1992},
273      volume        = {1},
274      pages         = {35--54}
275    }
276    
277  @book{gri:00,  @book{gri:00,
278   author         = {A. Griewank},   author         = {A. Griewank},
279   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 271  Line 295 
295   volume         = {39},   volume         = {39},
296   pages          = {2038--3050},   pages          = {2038--3050},
297                    }                    }
298    
299    @Article{Haney,
300      author =       {R.L. Haney},
301      title =        {Surface thermal boundary conditions for ocean
302                      circulation models},
303      journal =      jpo,
304      year =         1971,
305      volume =       1,
306      pages =        {241--248}
307    }
308    
309  @Article{hil-eta:01,  @Article{hil-eta:01,
310   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
311                    J. Marshall},                    J. Marshall},
312   year           = {2001},   year           = {2002},
313   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
314                    circulation on carbon sequestration},                    circulation on carbon sequestration},
315   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
316   note           = {submitted},   note           = {submitted},
317                    }                    }
318    
319    @ARTICLE{hib80,
320      AUTHOR      = "W. D. {Hibler, III}",
321      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
322      JOURNAL     = mwr,
323      YEAR        = 1980,
324      VOLUME      = 1,
325      PAGES       = "1943-1973"
326    }
327    
328    @Article{Holland75,
329     author         = {W.R. Holland and L. B. Lin},
330     year           = {1975a},
331     title          = {On the origin of mesoscale eddies and their contribution
332                       to the general circulation of the ocean. I. A preliminary
333                       numerical experiment},
334     journal        = jpo,
335     volume         = {5},
336     pages          = {642-657}
337                      }
338    
339    @Article{hol-lin:75b,
340     author         = {W.R. Holland and L. B. Lin},
341     year           = {1975b},
342     title          = {On the origin of mesoscale eddies and their contribution
343                       to the general circulation of the ocean. II. A parameter
344                       study},
345     journal        = jpo,
346     volume         = {5},
347     pages          = {658-669}
348                      }
349    
350  @book{kas-eta:00,  @book{kas-eta:00,
351   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
352                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 326  Line 391 
391   volume         = {38A},   volume         = {38A},
392   pages          = {97--110},   pages          = {97--110},
393                    }                    }
394    
395    @TechReport{lev:94a,
396      author =       {S. Levitus and T.P.Boyer},
397      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
398      institution =  {NOAA Atlas NESDIS 3},
399      year =         1994,
400      OPTkey =       {},
401      OPTtype =      {},
402      OPTnumber =    {},
403      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
404      OPTmonth =     {},
405      OPTnote =      {},
406      OPTannote =    {}
407    }
408    
409    
410    @TechReport{Levitus94,
411      author =       {S. Levitus and T.P.Boyer},
412      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
413      institution =  {NOAA Atlas NESDIS 4},
414      year =         1994,
415      OPTkey =       {},
416      OPTtype =      {},
417      OPTnumber =    {},
418      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
419      OPTmonth =     {},
420      OPTnote =      {},
421      OPTannote =    {}
422    }
423    
424    
425  @Article{lew-der:85,  @Article{lew-der:85,
426   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
# Line 412  Line 507 
507   volume         = {28},   volume         = {28},
508   pages          = {215--248},   pages          = {215--248},
509                    }                    }
510    
511    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
512    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
513    %% (Available from Unidata or in PostScript form by anonymous FTP from
514    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
515    %%   a hypertext version of the User's Guide available at
516    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
517    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
518    %%   also available.
519    
520    @TechReport{rew:97,
521      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
522      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
523                      An Interface for Data Access, Version 3},
524      institution =  {Unidata Program Center},
525      type =         {Report},
526      address =      {Boulder, Colorado},
527      year =         1997,
528      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
529    }
530    
531    
532  @Article{res-eta:98,  @Article{res-eta:98,
533   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
534   year           = 1998,   year           = 1998,
535   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
536                    data assimilation studies},                    data assimilation studies},
537   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
538   volume         = {19},   volume         = {19},
# Line 446  Line 562 
562   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
563   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
564                    }                    }
565    
566    @Article{DaSilva94,
567     author         = {A. da Silva and A. C. Young and S. Levitus},
568     year           = 1994,
569     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
570     journal        = {NOAA Atlas NESDIS},
571     volume         = {6},
572     publisher      = {U.S. Department of Commerce},
573     address        = {Washington, D.C. (USA)},
574     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
575                      }
576    
577  @techreport{sta-eta:97,  @techreport{sta-eta:97,
578   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
579                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
580                    C. Hill},                    C. Hill},
581   year           = 1997,   year           = 1997,
582   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
# Line 472  Line 599 
599                    estimated from ocean observations and a general                    estimated from ocean observations and a general
600                    circulation model},                    circulation model},
601   journal        = jgr,   journal        = jgr,
602   note           = {submitted},   note           = {in press},
603                      }
604    
605    @Article{Stommel66,
606     author         = {H. Stommel},
607     year           = 1948,
608     title          = {The western intensification of wind-driven ocean currents},
609     journal        = {Trans. Am. Geophys. Union},
610     volume         = {29},
611     pages          = {206},
612                    }                    }
613    
614  @Article{tal-cou:87,  @Article{tal-cou:87,
# Line 606  Line 742 
742   volume         = {57},   volume         = {57},
743   pages          = {305--334},   pages          = {305--334},
744                    }                    }
745    
746    
747    @InCollection{hill:95,
748      author =       {Hill, C. and J. Marshall},
749      title =        {Application of a Parallel Navier-Stokes Model to
750                      Ocean Circulation in Parallel Computational Fluid
751                      Dynamics},
752      booktitle =    {Implementations and Results Using Parallel
753                      Computers},
754      pages =        {545-552},
755      publisher =    {Elsevier Science B.V.: New York},
756      year =         1995,
757      editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
758    }
759    
760    
761    @Article{marshall:97a,
762      author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
763      title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
764                     modeling},
765      journal =      {JGR},
766      year =         1997,
767      volume =       102,
768      number =       {C3},
769      pages =        {5733-5752}
770    }
771    
772    @Article{marshall:97b,
773      author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
774      title =        {A finite-volume, incompressible Navier Stokes model for
775                      studies of the ocean on parallel computers},
776      journal =      {JGR},
777      year =         1997,
778      volume =       102,
779      number =       {C3},
780      pages =        {5753-5766}
781    }
782    
783    @Article{adcroft:97,
784      author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
785      title =        {Representation of topography by shaved cells in a height
786                      coordinate ocean model},
787      journal =      {MWR},
788      year =         1997,
789      volume =       125,
790      pages =        {2293-2315}
791    }
792    
793    @Article{adcroft:04,
794      author =       {Adcroft, A.J. and J.-M. Campin},
795      title =        {Re-scaled height coordinates for accurate representation
796                      of free-surface flows in ocean circulation models},
797      journal =      om,
798      year =         2004,
799      note =         {in press}
800    }
801    
802    @Article{visbeck:97,
803      author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
804      title =        {Specification of eddy transfer coefficients in
805                      coarse-resolution ocean circulation models},
806      journal =      {JPO},
807      year =         1997,
808      volume =       27,
809      number =       3,
810      pages =        {381-402}
811    }
812    
813    @Article{shaw:98,
814      author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
815                      and Marshall, J.},
816      title =        {A comparison of implicitly parallel multi-threaded and
817                      data-parallel implementations of an ocean model based
818                      on the Navier-Stokes equations},
819      journal =      {J. of Parallel and Distributed Computing},
820      year =         1998,
821      volume =       48,
822      number =       1,
823      pages =        {1-51}
824    }
825    
826    @Article{marshall:98,
827      author =       {J. Marshall and H. Jones and C. Hill},
828      title =        {Efficient ocean modeling using non-hydrostatic algorithms},
829      journal =      {JMR},
830      year =         1998,
831      volume =       18,
832      pages =        {115-134}
833    }
834    
835    @Article{mjn:99,
836      author =       {Marshall, J., Jamous, D and J. Nilsson},
837      title =        {Reconciling `thermodynamic' and `dynamic' methods of
838                      computation of water-mass transformation rates},
839      journal =      {DSR},
840      year =         1999,
841      volume =       46,
842      pages =        {545-572}
843    }
844    
845    @Article{ms:99,
846      author =       {Marshall, J and F. Schott},
847      title =        {Open ocean deep convection: observations, models and theory},
848      journal =      {Rev. Geophys.},
849      year =         1999,
850      volume =       37,
851      number =       1,
852      pages =        {1-64}
853    }
854    
855    @Article{adcroft:99,
856      author =       {Adcroft, A., Hill C. and J. Marshall},
857      title =        {A new treatment of the Coriolis terms in C-grid models
858                      at both high and low resolutions},
859      journal =      {MWR},
860      year =         1999,
861      volume =       127,
862      pages =        {1928-1936}
863    }
864    
865    @InProceedings{hill:99,
866      author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
867      title =        {A Strategy for Terascale Climate Modeling},
868      booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
869      year =         1999,
870      pages = {406-425},
871      publisher =    {World Scientific},
872    }
873    
874    @Article{wardle:00,
875      author =       {Wardle R. and Marshall J.},
876      title =        {Representation of eddies in primitive equation models by a PV flux},
877      journal =      {JPO},
878      year =         2000,
879      volume =       30,
880      number =       10,
881      pages =        {2481-2503}
882    }
883    
884    @Article{ac:02,
885      author =       {Adcroft, A. and J.-M. Campin},
886      title =        {Comparison of finite volume schemes and direct-space-time
887                      methods for ocean circulation models},
888      journal =      om,
889      year =         2002,
890      note =         {in preparation}
891    }
892    
893    @Article{adcroft:02,
894      author =       {Adcroft et al.},
895      title =        {Energy conversion in discrete numerical models},
896      journal =      om,
897      year =         2002,
898      note =         {in preparation}
899    }
900    
901    @InCollection{arakawa:77,
902      author =       {Arakawa, A. and Lamb, V.},
903      title =        {Computational Design of the Basic Dynamical Processes of
904                      the UCLA General Circulation Model},
905      booktitle =    {Methods in Computational Physics},
906      pages =        {174-267},
907      publisher =    {Academic Press},
908      year =         1977,
909      volume =       17
910    }
911    
912    @Article{adcroft:98,
913      author =       {Adcroft, A. and Marshall, D.},
914      title =        {How slippery are piecewise-constant coastlines in numerical
915                      ocean models?},
916      journal =      {Tellus},
917      year =         1998,
918      volume =       50,
919      number =       1,
920      pages =        {95-108}
921    }
922    
923    @PhdThesis{adcroft:95,
924      author =       {Adcroft, A.},
925      title =        {Numerical Algorithms for use in a Dynamical Model of the
926                      Ocean},
927      school =       {Imperial College, London},
928      year =         1995
929    }
930    
931    @Article{griffies:00,
932      author =       {Griffies, S.,M. and Hallberg, R.,W.},
933      title =        {Biharmonic friction with a Smagorinsky-like viscosity for
934                      use in large-scale eddy-permitting ocean models},
935      journal =      {MWR},
936      year =         2000,
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