--- manual/manual_references.bib 2001/10/04 19:27:24 1.1 +++ manual/manual_references.bib 2002/12/16 20:39:04 1.12 @@ -250,6 +250,28 @@ pages = {401 pp.}, } +@incollection{gri:89, + author = {A. Griewank}, + year = 1989, + title = {On automatic differentiation}, + booktitle = {Mathematical Programming: Recent Developments and + Applications}, + pages = {83--108}, + editor = {M. Iri and K. Tanabe}, + publisher = {Kluwer}, + address = {Dordrecht, NL}, + } + +@Article{gri:92, + author = {A.~Griewank}, + title = {Achieving logarithmic growth of temporal and spatial + complexity in reverse {A}utomatic {D}ifferentiation}, + journal = {Optimization Methods and Software}, + year = {1992}, + volume = {1}, + pages = {35--54} +} + @book{gri:00, author = {A. Griewank}, title = {Evaluating Derivatives. Principles and Techniques @@ -271,17 +293,49 @@ volume = {39}, pages = {2038--3050}, } + +@Article{Haney, + author = {R.L. Haney}, + title = {Surface thermal boundary conditions for ocean + circulation models}, + journal = jpo, + year = 1971, + volume = 1, + pages = {241--248} +} @Article{hil-eta:01, author = {C. Hill and M. Follows and V. Bugnion and J. Marshall}, - year = {2001}, + year = {2002}, title = {Spatial and Temporal Impacts of ocean general circulation on carbon sequestration}, - journal = {journal ???}, + journal = {Global Biogeochemical Cycles}, note = {submitted}, } - + +@Article{Holland75, + author = {W.R. Holland and L. B. Lin}, + year = {1975a}, + title = {On the origin of mesoscale eddies and their contribution + to the general circulation of the ocean. I. A preliminary + numerical experiment}, + journal = jpo, + volume = {5}, + pages = {642-657} + } + +@Article{hol-lin:75b, + author = {W.R. Holland and L. B. Lin}, + year = {1975b}, + title = {On the origin of mesoscale eddies and their contribution + to the general circulation of the ocean. II. A parameter + study}, + journal = jpo, + volume = {5}, + pages = {658-669} + } + @book{kas-eta:00, author = {P. Kasibhatla and M. Heimann and P. Rayner and N. Mahowald and R.G. Prinn and D.E. Hartley}, @@ -326,6 +380,36 @@ volume = {38A}, pages = {97--110}, } + +@TechReport{lev:94a, + author = {S. Levitus and T.P.Boyer}, + title = {{World Ocean Atlas 1994 Volume 3: Salinity}}, + institution = {NOAA Atlas NESDIS 3}, + year = 1994, + OPTkey = {}, + OPTtype = {}, + OPTnumber = {}, + OPTaddress = {U.S. Department of Commerce, Washington D.C.}, + OPTmonth = {}, + OPTnote = {}, + OPTannote = {} +} + + +@TechReport{Levitus94, + author = {S. Levitus and T.P.Boyer}, + title = {{World Ocean Atlas 1994 Volume 4: Temperature}}, + institution = {NOAA Atlas NESDIS 4}, + year = 1994, + OPTkey = {}, + OPTtype = {}, + OPTnumber = {}, + OPTaddress = {U.S. Department of Commerce, Washington D.C.}, + OPTmonth = {}, + OPTnote = {}, + OPTannote = {} +} + @Article{lew-der:85, author = {J. Lewis and J. Derber}, @@ -416,7 +500,7 @@ @Article{res-eta:98, author = {J.M. Restrepo and G.K. Leaf and A. Griewank}, year = 1998, - title = {Circumvening storage limitations in variational + title = {Circumventing storage limitations in variational data assimilation studies}, journal = {SIAM J. Sci. Comput.}, volume = {19}, @@ -446,10 +530,21 @@ publisher = {Springer-Verlag}, address = {Berlin (Germany)}, } + +@Article{DaSilva94, + author = {A. da Silva and A. C. Young and S. Levitus}, + year = 1994, + title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures}, + journal = {NOAA Atlas NESDIS}, + volume = {6}, + publisher = {U.S. Department of Commerce}, + address = {Washington, D.C. (USA)}, + note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, + } @techreport{sta-eta:97, author = {D. Stammer and C. Wunsch and R. Giering and - Q. Zhang and J. Marotzke an J. Marshall and + Q. Zhang and J. Marotzke and J. Marshall and C. Hill}, year = 1997, title = {The global ocean circulation estimated from @@ -472,7 +567,16 @@ estimated from ocean observations and a general circulation model}, journal = jgr, - note = {submitted}, + note = {in press}, + } + +@Article{Stommel66, + author = {H. Stommel}, + year = 1948, + title = {The western intensification of wind-driven ocean currents}, + journal = {Trans. Am. Geophys. Union}, + volume = {29}, + pages = {206}, } @Article{tal-cou:87, @@ -606,5 +710,322 @@ volume = {57}, pages = {305--334}, } - - + + +@InCollection{hill:95, + author = {Hill, C. and J. Marshall}, + title = {Application of a Parallel Navier-Stokes Model to + Ocean Circulation in Parallel Computational Fluid + Dynamics}, + booktitle = {Implementations and Results Using Parallel + Computers}, + pages = {545-552}, + publisher = {Elsevier Science B.V.: New York}, + year = 1995, + editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor} +} + + +@Article{marshall:97a, + author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, + title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean + modeling}, + journal = {JGR}, + year = 1997, + volume = 102, + number = {C3}, + pages = {5733-5752} +} + +@Article{marshall:97b, + author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, + title = {A finite-volume, incompressible Navier Stokes model for + studies of the ocean on parallel computers}, + journal = {JGR}, + year = 1997, + volume = 102, + number = {C3}, + pages = {5753-5766} +} + +@Article{adcroft:97, + author = {Adcroft, A.J. and Hill, C.N. and J. Marshall}, + title = {Representation of topography by shaved cells in a height + coordinate ocean model}, + journal = {MWR}, + year = 1997, + volume = 125, + pages = {2293-2315} +} + +@Article{visbeck:97, + author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, + title = {Specification of eddy transfer coefficients in + coarse-resolution ocean circulation models}, + journal = {JPO}, + year = 1997, + volume = 27, + number = 3, + pages = {381-402} +} + +@Article{shaw:98, + author = {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P. + and Marshall, J.}, + title = {A comparison of implicitly parallel multi-threaded and + data-parallel implementations of an ocean model based + on the Navier-Stokes equations}, + journal = {J. of Parallel and Distributed Computing}, + year = 1998, + volume = 48, + number = 1, + pages = {1-51} +} + +@Article{marshall:98, + author = {J. Marshall and H. Jones and C. Hill}, + title = {Efficient ocean modeling using non-hydrostatic algorithms}, + journal = {JMR}, + year = 1998, + volume = 18, + pages = {115-134} +} + +@Article{mjn:99, + author = {Marshall, J., Jamous, D and J. Nilsson}, + title = {Reconciling `thermodynamic' and `dynamic' methods of + computation of water-mass transformation rates}, + journal = {DSR}, + year = 1999, + volume = 46, + pages = {545-572} +} + +@Article{ms:99, + author = {Marshall, J and F. Schott}, + title = {Open ocean deep convection: observations, models and theory}, + journal = {Rev. Geophys.}, + year = 1999, + volume = 37, + number = 1, + pages = {1-64} +} + +@Article{adcroft:99, + author = {Adcroft, A., Hill C. and J. Marshall}, + title = {A new treatment of the Coriolis terms in C-grid models + at both high and low resolutions}, + journal = {MWR}, + year = 1999, + volume = 127, + pages = {1928-1936} +} + +@InProceedings{hill:99, + author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, + title = {A Strategy for Terascale Climate Modeling}, + booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, + year = 1999, + pages = {406-425}, + publisher = {World Scientific}, +} + +@Article{wardle:00, + author = {Wardle R. and Marshall J.}, + title = {Representation of eddies in primitive equation models by a PV flux}, + journal = {JPO}, + year = 2000, + volume = 30, + number = 10, + pages = {2481-2503} +} + +@Article{ac:02, + author = {Adcroft, A. and J.-M. Campin}, + title = {Comparison of finite volume schemes and direct-space-time + methods for ocean circulation models}, + journal = {OM}, + year = 2002, + note = {in preparation} +} + +@Article{adcroft:02, + author = {Adcroft et al.}, + title = {Energy conversion in discrete numerical models}, + journal = {OM}, + year = 2002, + note = {in preparation} +} + +@InCollection{arakawa:77, + author = {Arakawa, A. and Lamb, V.}, + title = {Computational Design of the Basic Dynamical Processes of + the UCLA General Circulation Model}, + booktitle = {Methods in Computational Physics}, + pages = {174-267}, + publisher = {Academic Press}, + year = 1977, + volume = 17 +} + +@Article{adcroft:98, + author = {Adcroft, A. and Marshall, D.}, + title = {How slippery are piecewise-constant coastlines in numerical + ocean models?}, + journal = {Tellus}, + year = 1998, + volume = 50, + number = 1, + pages = {95-108} +} + +@PhdThesis{adcroft:95, + author = {Adcroft, A.}, + title = {Numerical Algorithms for use in a Dynamical Model of the + Ocean}, + school = {Imperial College, London}, + year = 1995 +} + +@Article{griffies:00, + author = {Griffies, S.,M. and Hallberg, R.,W.}, + title = {Biharmonic friction with a Smagorinsky-like viscosity for + use in large-scale eddy-permitting ocean models}, + journal = {MWR}, + year = 2000, + volume = 128, + number = 8, + pages = {2935-2946} +} + +@Article{wajsowicz:93, + author = {Wajsowicz, R.}, + title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR + FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION}, + journal = {JCP}, + year = 1993, + volume = 105, + number = 2, + pages = {333-338} +} + +@Article{campin:02, + author = {Campin et al.}, + title = {Conservation of properties in a free-surface model}, + journal = {OM}, + year = 2002, + note = {in preparation} +} + +@Article{dm:95, + author = {Danabasoglu, G. and McWilliams J.C.}, + title = {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports}, + journal = {JC}, + year = 1995, + volume = 8, + number = 12, + pages = {2967-2987} +} + +@Article{ldd:97, + author = {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.}, + title = {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology}, + journal = {JPO}, + year = 1997, + volume = 27, + number = 11, + pages = {2418-2447} +} + +@Article{gkw:99, + author = {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.}, + title = {Mechanisms for spreading of Mediterranean water in + coarse-resolution numerical models}, + journal = {JPO}, + year = 1999, + volume = 29, + number = 8, + pages = {1682-1700} +} + +@Article{roe:85, + author = {Roe, P.L.}, + title = {Some contributions to the modeling of discontinuous flows}, + journal = {Lect. Notes Appl. Math.}, + year = 1985, + volume = 22, + pages = {163-193} +} + +@Article{trenberth90, + author = {K. M. Trenberth and J. Olson and W. G. Large}, + title = {The Mean Annual Cycle in {G}lobal {O}cean Wind + Stress}, + journal = jpo, + year = 1990, + volume = 20, + pages = {1742--1760} +} + +@Article{jiang99, + author = {Shi Jiang and Peter H. Stone and Paola + Malanotte-Rizzoli}, + title = {An Assessment of the {G}eophysical {F}luid + {D}ynamics {L}aboratory Ocean Model with Coarse + Resolution: Annual-Mean Climatology}, + journal = jgr, + year = 1999, + volume = 104, + number = {C11}, + pages = {25,623--25,645} +} + +@Article{szoeke02, + author = {de Szoeke, Roland A. and Roger M. Samelson}, + title = {The Duality between the {B}oussinesq and + {N}on-{B}oussinesq Hydrostatic Equations of Motion}, + journal = jpo, + year = 2002, + volume = 32, + number = 8, + pages = {2194--2203} +} + +@Article{jackett95, + author = {David R. Jackett and Trevor J. McDougall}, + title = {Minimal Adjustment of Hydrographic Profiles to + Achieve Static Stability}, + journal = jaot, + year = 1995, + volume = 12, + number = 4, + pages = {381--389} +} + +@Article{mcdougall03, + author = {Trevor J. McDougall and David R. Jackett and Daniel + G. Wright and Rainer Feistel}, + title = {Accurate and Computationally Efficient Algorithms + for Potential Temperature and Density of Seawater}, + journal = jaot, + year = {2003}, + OPTkey = {}, + OPTvolume = {}, + OPTnumber = {}, + OPTpages = {}, + OPTmonth = {}, + OPTnote = {{\textup{In press}}}, + OPTannote = {} +} + +@TechReport{fofonoff83, + author = "Fofonoff, P. and Millard, Jr., R.C.", + title = "Algorithms for Computation of Fundamental Properties + of Seawater", + institution = "Unesco", + year = 1983, + type = "Unesco Technical Papers in Marine Science", + number = 44, + pages = {53 pp.} +} +