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revision 1.25 by jmc, Fri Sep 23 01:03:47 2005 UTC revision 1.33 by jmc, Thu Jan 17 21:28:22 2008 UTC
# Line 71  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 118  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{durr:91,
135      author = {Dale R. Durran},
136      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
137               to Leapfrog Time Differencing},
138      journal = mwr,
139      year = {1991},
140      volume = {119},
141      pages  = {702-720},
142    }
143    
144    
145    @ARTICLE{dutk-etal:06,
146      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
147      title = {Controls on ocean productivity and air-sea carbon flux:
148               An adjoint model sensitivity study},
149      journal = grl,
150      year = {2006},
151      volume = {33},
152      pages  = {L02603},
153      doi    = {10.1029/2005GL024987},
154    }
155    
156  @Article{err:97,  @Article{err:97,
157   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 358  Line 392 
392   pages          = {658-669}   pages          = {658-669}
393                    }                    }
394    
395    @Article{jam-oze:86,
396     author         = {B.M. Jamart and J. Ozer},
397     year           = {1986},
398     title          = {Numerical boundary layers and spurious residual flows},
399     journal        = jgr,
400     volume         = {91},
401     pages          = {10,621-10,631}
402                      }
403    
404  @book{kas-eta:00,  @book{kas-eta:00,
405   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
406                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 454  Line 497 
497   pages          = {38 pp.},   pages          = {38 pp.},
498   address        = {Delft (NL)},   address        = {Delft (NL)},
499                    }                    }
500    
501    @ARTICLE{losc-heim:06,
502      author = {M. Losch and P. Heimbach},
503      title = {Adjoint sensitivity of an ocean general circulation model
504               to bottom topography},
505      journal = jpo,
506      year = {2006},
507      volume = {{in press}},
508      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
509    }
510    
511    
512  @Article{maro-wun:93,  @Article{maro-wun:93,
513   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 500  Line 554 
554   pages          = {5,753--5,766},   pages          = {5,753--5,766},
555                    }                    }
556    
557  @Article{mars-sha:98,  @Article{mars-eta:98,
558   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
559   year           = 1998,   year           = 1998,
560   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 508  Line 562 
562   journal        = jms,   journal        = jms,
563   volume         = {18},   volume         = {18},
564   pages          = {115--134},   pages          = {115--134},
565     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
566     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
567                    }                    }
568    
569  @Article{mcw:96,  @Article{mcw:96,
# Line 528  Line 584 
584  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
585  %%   also available.  %%   also available.
586    
587    @incollection{naum-etal:06,
588            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
589            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
590            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
591            Pages = {~},
592            Publisher = {TU Delft},
593            Title = {Adjoint code by source transformation with OpenAD/F},
594            Year = {2006}}
595    
596  @TechReport{rew:97,  @TechReport{rew:97,
597    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
598    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
# Line 574  Line 639 
639   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
640                    }                    }
641    
642    @article{utke-etal:08,
643            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
644            Date-Modified = {2007-11-19 10:15:08 -0500},
645            Journal = {{ACM} Transactions on Mathematical Software},
646            Pages = {~},
647            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
648            Volume = {34(4)},
649            Year = {2008}}
650    
651  @Article{DaSilva94,  @Article{DaSilva94,
652   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
653   year           = 1994,   year           = 1994,
# Line 583  Line 657 
657   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
658   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
659   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
660     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
661                    }                    }
662    
663  @techreport{sta-eta:97,  @techreport{stam-etal:97,
664   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
665                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
666                    C. Hill},                    C. Hill},
# Line 601  Line 676 
676   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
677                    }                    }
678    
679  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
680   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
681                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
682                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
683   year           = 2001,    year = {2002a},
684   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
685                    estimated from ocean observations and a general    pages = {3118},
686                    circulation model},    doi   = {10.1029/2001JC000888},
687   journal        = jgr,  }
688   note           = {in press},  
                   }  
689    
690  @Article{Stommel66,  @Article{Stommel66,
691   author         = {H. Stommel},   author         = {H. Stommel},
# Line 777  Line 851 
851    year =         1997,    year =         1997,
852    volume =       102,    volume =       102,
853    number =       {C3},    number =       {C3},
854    pages =        {5733-5752}    pages =        {5733-5752},
855      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
856  }  }
857    
858  @Article{marshall:97b,  @Article{marshall:97b,
# Line 788  Line 863 
863    year =         1997,    year =         1997,
864    volume =       102,    volume =       102,
865    number =       {C3},    number =       {C3},
866    pages =        {5753-5766}    pages =        {5753-5766},
867      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
868  }  }
869    
870  @Article{adcroft:97,  @Article{adcroft:97,
# Line 798  Line 874 
874    journal =      mwr,    journal =      mwr,
875    year =         1997,    year =         1997,
876    volume =       125,    volume =       125,
877    pages =        {2293-2315}    pages =        {2293-2315},
878      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
879      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
880  }  }
881    
882  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 808  Line 886 
886    journal =      om,    journal =      om,
887    year =         2004,    year =         2004,
888    volume =       7,    volume =       7,
889    pages =        {269-284}    pages =        {269-284},
890      doi   =        {10.1016/j.ocemod.2003.09.003},
891  }  }
892    
893  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 818  Line 897 
897    journal =      mwr,    journal =      mwr,
898    year =         2004,    year =         2004,
899    volume =       132,    volume =       132,
900    pages =        {2845-2863}    pages =        {2845-2863},
901      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
902      doi     =      {10.1175/MWR2823.1},
903    }
904    
905    @inproceedings{adcroft:04c,
906      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
907                      and P. Heimbach},
908      title =        {Overview of the Formulation and Numerics of the MIT GCM},
909      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
910                     Recent developments in numerical methods for atmosphere and
911                     ocean modelling},
912      year =         2004,
913      pages =        {139-149},
914      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
915     publisher =     ecmwf
916  }  }
917    
918  @Article{marshall:04,  @Article{marshall:04,
# Line 827  Line 921 
921    journal =      mwr,    journal =      mwr,
922    year =         2004,    year =         2004,
923    volume =       132,    volume =       132,
924    pages =        {2882-2894}    pages =        {2882-2894},
925      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
926      doi    =       {10.1175/MWR2835.1},
927  }  }
928    
929  @Article{visbeck:97,  @Article{visbeck:97,
# Line 854  Line 950 
950    pages =        {1-51}    pages =        {1-51}
951  }  }
952    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
953  @Article{mjn:99,  @Article{mjn:99,
954    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
955    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 890  Line 977 
977    journal =      mwr,    journal =      mwr,
978    year =         1999,    year =         1999,
979    volume =       127,    volume =       127,
980    pages =        {1928-1936}    pages =        {1928-1936},
981      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
982      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
983  }  }
984    
985  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 1064  Line 1153 
1153  }  }
1154    
1155  @Article{molteni:03,  @Article{molteni:03,
1156    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1157    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1158                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1159                    multidecadal experiments},                    multidecadal experiments},
1160    journal =      climd,    journal =      climd,
1161    year =         2003,    year =         2003,
# Line 1557  atmospheric boundary layer.}, Line 1646  atmospheric boundary layer.},
1646   volume         = {126},   volume         = {126},
1647   pages          = {991-1000}   pages          = {991-1000}
1648                    }                    }
1649    @TechReport{MPI-std-20,
1650      author =       {{Message Passing Interface Forum}}},
1651      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1652      institution =  {mpi-forum.org},
1653      year =         {1998},
1654    }
1655    
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