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1 @string{angl = {Ann.\ Glaciol.}}
2 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
3 @string{bams = {Bull.~Am.~Met.~Soc.}}
4 @string{blm = {Bound.~Layer~Meteorol.}}
5 @string{climd = {Clim.~Dynamics}}
6 @string{cch = {Clim.\ Change}}
7 @string{cup = {Cambridge University Press}}
8 @string{dao = {Dyn.~Atmos.~Oceans}}
9 @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
10 @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
11 @string{dsr = {Deep Sea Res.}}
12 @string{ecmwf = {ECMWF}}
13 @string{eos = {Eos~Trans.\ AGU}}
14 @string{esa = {European Space Agency (ESA)}}
15 @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16 @string{estec = {European Space Research and Technology Centre (ESTEC)}}
17 @string{gaos = {Global Atmos.~Ocean System}}
18 @string{grl = {Geophys.~Res.~Lett.}}
19 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
20 @string{ifremer = {IFREMER/CERSAT}}
21 @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
22 @string{jam = {J.~Appl.~Meteor.}}
23 @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
24 @string{jas = {J.~Atmos.~Sci.}}
25 @string{jclim = {J.~Clim.}}
26 @string{jcp = {J.~Comput.~Phys.}}
27 @string{jfm = {J.~Fluid Mech.}}
28 @string{jgr = {J.~Geophys.~Res.}}
29 @string{ijrs = {Int.~J.~Remote Sensing}}
30 @string{jms = {J.~Mar.~Sys.}}
31 @string{jpo = {J.~Phys.~Oceanogr.}}
32 @string{mpi = {MPI f\"ur Meteorologie}}
33 @string{mwr = {Mon.~Wea.~Rev.}}
34 @string{om = {Ocean Modelling}}
35 @string{ptrsl = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
37 @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38 @string{tel = {Tellus}}
39
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42 A. Griewank and K. Haigler and P. Newman},
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44 title = {Automatic differentiation of advanced GFD codes
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46 journal = {Journal on Computing Systems in Engineering},
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48 pages = {625--638},
49 }
50
51 @incollection{bis:94,
52 author = {C.H. Bishof},
53 year = 1994,
54 title = {Automatic differentiation, tangent linear models
55 and pseudo-adjoints},
56 booktitle = {High Performance Computing in the Geosciences},
57 series = {Series C: Mathematical and Physical Sciences},
58 pages = {59--80},
59 editor = {F.X. {Le Dimet}},
60 publisher = {Kluwer},
61 address = {Dordrecht, NL},
62 }
63
64 @techreport{bis-eta:94,
65 author = {C. Bishof and A. Carle and P. Khademi and
66 A. Maurer},
67 year = 1994,
68 title = {The ADIFOR 2.0 system for the automatic
69 differentiation of FORTRAN 77 programs},
70 institution = {Argonne National Laboratory, Mathematics and
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72 type = {Argonne Preprint},
73 number = {ANL-MCS-P981-1194},
74 address = {ANL; 9700 South Cass Ave.;
75 Argonne (ILL), 90439; USA},
76 note = {http://www.mcs.anl.gov/autodiff/},
77 }
78
79 @ARTICLE{bryan:84,
80 author = {Kirk Bryan},
81 title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
82 journal = jpo,
83 year = {1984},
84 volume = {14},
85 number = {4},
86 pages = {666-673},
87 }
88
89 @ARTICLE{bugi-hill:06,
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91 title = {Equilibration mechanisms in an adjoint ocean general
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93 journal = {Ocean Dynamics},
94 year = {2006},
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96 number = {1},
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99 }
100
101 @techreport{bis-roh:97,
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103 year = 1997,
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105 for ANSI-C},
106 institution = {Argonne National Laboratory, Mathematics and
107 Computer Science Division},
108 type = {Argonne Preprint},
109 number = {ANL-MCS-P626-1196},
110 address = {ANL; 9700 South Cass Ave.;
111 Argonne (ILL), 90439; USA},
112 note = {http://www.mcs.anl.gov/autodiff/},
113 }
114
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121 journal = qjrms,
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124 }
125
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127 author = {P. Courtier and O. Talagrand},
128 year = 1990,
129 title = {Variational assimilation of meteorological
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135 }
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147
148 @ARTICLE{durr:91,
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156 }
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187 }
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191 year = {1996a},
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195 volume = {53},
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200 author = {B.F. Farrell and P. Ioannou},
201 year = {1996b},
202 title = {Generalized stability theory. Part I:
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204 journal = jas,
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207 }
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211 year = 1998,
212 title = {Odyss{\'e}e User's Guide. Version 1.7},
213 institution = {Institut National de Recherche en Informatique
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215 type = {Rapport Technique},
216 number = {0224},
217 address = {INRIA; 2004, route des Luciolis, B.P. 93;
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219 note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
220 }
221
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226 journal = {Optimisation Methods and Software},
227 note = {in press},
228 }
229
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232 year = 2005,
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234 using a Residual-Mean Ocean Circulation Model and Its Adjoint},
235 journal = jpo,
236 volume = {35},
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239
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277
278 @techreport{gie:99,
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280 year = 1999,
281 title = {Tangent linear and Adjoint Model Compiler.
282 Users manual 1.4 (TAMC Version 5.2)},
283 institution = {Massachusetts Institute of Technology},
284 type = {Report},
285 number = {~},
286 address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
287 02139; USA},
288 note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
289 }
290
291 @incollection{gie:00,
292 author = {R. Giering},
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295 year = 2000,
296 booktitle = {Inverse methods in global biogeochemical cycles},
297 title = {Tangent linear and adjoint biogeochemical models},
298 publisher = {American Geophysical Union},
299 series = {Geophysical Monograph},
300 volume = {114},
301 address = {Washington, DC},
302 pages = {33--48},
303 }
304
305 @Article{gil-lem:89,
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307 year = 1989,
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310 journal = {Math. Programming},
311 volume = {45},
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330 pages = {83--108},
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332 publisher = {Kluwer},
333 address = {Dordrecht, NL},
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335
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350 year = 2000,
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360 year = 1982,
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399 TITLE = "Modeling a Variable Thickness Sea Ice Cover",
400 JOURNAL = mwr,
401 YEAR = 1980,
402 VOLUME = 1,
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439 N. Mahowald and R.G. Prinn and D.E. Hartley},
440 year = 2000,
441 title = {Inverse methods in global biogeochemical cycles},
442 publisher = {American Geophysical Union},
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480
481 @TechReport{lev:94a,
482 author = {S. Levitus and T.P.Boyer},
483 title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
484 institution = {NOAA Atlas NESDIS 3},
485 year = 1994,
486 OPTkey = {},
487 OPTtype = {},
488 OPTnumber = {},
489 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
490 OPTmonth = {},
491 OPTnote = {},
492 OPTannote = {}
493 }
494
495
496 @TechReport{Levitus94,
497 author = {S. Levitus and T.P.Boyer},
498 title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
499 institution = {NOAA Atlas NESDIS 4},
500 year = 1994,
501 OPTkey = {},
502 OPTtype = {},
503 OPTnumber = {},
504 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
505 OPTmonth = {},
506 OPTnote = {},
507 OPTannote = {}
508 }
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524 title = {Notes on assimilating observations into
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526 institution = {Delft Hydraulics},
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529 pages = {38 pp.},
530 address = {Delft (NL)},
531 }
532
533 @ARTICLE{losc-heim:06,
534 author = {Martin Losch and Patrick Heimbach},
535 title = {Adjoint Sensitivity of an Ocean General Circulation
536 Model to Bottom Topography},
537 journal = jpo,
538 year = 2007,
539 volume = 37,
540 doi = {10.1175/JPO3017.1},
541 number = 2,
542 pages = {377--393},
543 url = {http://mitgcm.org/pdfs/Los2006a.pdf},
544 }
545
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548 author = {J. Marotzke and C. Wunsch},
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566 volume = {104, C12},
567 pages = {29,529--29,547},
568 }
569
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580
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585 title = {Hydrostatic, quasi-hydrostatic and
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588 volume = {102, C3},
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595 title = {Efficient ocean modeling using
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599 pages = {115--134},
600 url = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
601 doi = {10.1016/S0924-7963\%2898\%2900008-6},
602 }
603
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613
614 %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
615 %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
616 %% (Available from Unidata or in PostScript form by anonymous FTP from
617 %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
618 %% a hypertext version of the User's Guide available at
619 %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
620 %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
621 %% also available.
622
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624 Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
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627 Pages = {~},
628 Publisher = {TU Delft},
629 Title = {Adjoint code by source transformation with OpenAD/F},
630 Year = {2006}}
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654 An Interface for Data Access, Version 3},
655 institution = {Unidata Program Center},
656 type = {Report},
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658 year = 1997,
659 note = {http://www.unidata.ucar.edu/packages/netcdf/},
660 }
661
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665 year = 1998,
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672
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676 title = {Automatic differentiation in Odyss{\'e}e},
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685 title = {Assimilation of XBT data using a variational
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687 booktitle = {Oceanic circulation models:
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690 series = {NATO ASI Series},
691 volume = {C 284},
692 editor = {{D.L.T. Anderson and J. Willebrand}},
693 publisher = {Springer-Verlag},
694 address = {Berlin (Germany)},
695 }
696
697 @article{utke-etal:08,
698 Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent
699 and M. Strout and P. Heimbach and C. Hill and
700 D. Ozyurt and C. Wunsch},
701 Date-Modified ={2007-11-19 10:15:08 -0500},
702 Journal = {{ACM} Transactions on Mathematical Software},
703 Pages = {~},
704 Title = {OpenAD/F: A modular open source tool for automatic
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706 Volume = {34(4)},
707 Year = 2008
708 }
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