MITgcm/manual/manual_references.bib

@string{arfm    = {Annu.~Rev.~Fluid Mech.}}
@string{bams    = {Bull.~Am.~Met.~Soc.}}
@string{blm     = {Bound.~Layer~Meteorol.}}
@string{jgr     = {J.~Geophys.~Res.}}
@string{ijrs    = {Int.~J.~Remote Sensing}}
@string{jas     = {J.~Atmos.~Sci.}}
@string{jpo     = {J.~Phys.~Oceanogr.}}
@string{jclim   = {J.~Clim.}}
@string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
@string{jfm     = {J.~Fluid Mech.}}
@string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
@string{jms     = {J.~Mar.~Sys.}}
@string{gaos    = {Global Atmos.~Ocean System}}
@string{grl     = {Geophys.~Res.~Lett.}}
@string{dsr     = {Deep Sea Res.}}
@string{dao     = {Dyn.~Atmos.~Oceans}}
@string{mwr     = {Mon.~Wea.~Rev.}}
@string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
@string{tel     = {Tellus}}
@string{cup     = {Cambridge University Press}}
@string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
@string{ifremer = {IFREMER/CERSAT}}
@string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
@string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
@string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
@string{mpi     = {MPI f\"ur Meteorologie}}
@string{ecmwf   = {ECMWF}}
@string{estec   = {European Space Research and Technology Centre
                        (ESTEC)}}
@string{esa     = {European Space Agency (ESA)}}

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 year           = 1992,
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@incollection{bis:94,
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@techreport{bis-eta:94,
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 title          = {The ADIFOR 2.0 system for the automatic
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@techreport{bis-roh:97,
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@Article{cou-tal:87,
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@Article{cou-tal:90,
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@Article{err:97,
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                  }
 
@Article{far-moo:92,
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@Article{far-ioa:96a,
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@Article{far-ioa:96b,
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@techreport{fau-pap:98,
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 year           = 1998,
 title          = {Odyss{\'e}e User's Guide. Version 1.7},
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                  et en Automatique},
 type           = {Rapport Technique},
 number         = {0224},
 address        = {INRIA; 2004, route des Luciolis, B.P. 93;
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                  }
 
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@Article{gen-mcw:90,
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@Article{gen-eta:95,
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@Article{gie-kam:98,
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                  }

@techreport{gie:99,
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 title          = {Tangent linear and Adjoint Model Compiler. 
                  Users manual 1.4 (TAMC Version 5.2)},
 institution    = {Massachusetts Institute of Technology},
 type           = {Report},
 number         = {~},
 address        = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
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@incollection{gie:00,
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@Article{gil-lem:89,
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@Article{gri:92,
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  year          = {1992},
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@Article{hil-eta:01,
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                  J. Marshall},
 year           = {2002},
 title          = {Spatial and Temporal Impacts of ocean general 
                  circulation on carbon sequestration},
 journal        = {Global Biogeochemical Cycles},
 note           = {submitted},
                  }

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@Article{hol-lin:75b,
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                   to the general circulation of the ocean. II. A parameter
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@book{kas-eta:00,
 author         = {P. Kasibhatla and M. Heimann and P. Rayner and
                  N. Mahowald and R.G. Prinn and D.E. Hartley},
 year           = 2000,
 title          = {Inverse methods in global biogeochemical cycles},
 publisher      = {American Geophysical Union},
 series         = {Geophysical Monograph},
 volume         = {114},
 address        = {Washington, DC},
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                  }

@Article{lar-eta:94,
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 year           = 1994,
 title          = {Oceanic vertical mixing: A review and a model
                  with nonlocal boundary layer parameterization},
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 volume         = {32},
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@Article{lar-eta:97,
 author         = {W.G. Large and G. Danabasoglu and S.C. Doney 
                  and J.C. McWilliams},
 year           = 1997,
 title          = {Sensitivity to surface forcing and boundary layer
                  mixing in a global ocean model: annual-mean
                  climatology},
 journal        = jpo,
 volume         = {27},
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                  }
 
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@TechReport{lev:94a,
  author =       {S. Levitus and T.P.Boyer},
  title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
  institution =  {NOAA Atlas NESDIS 3},
  year =         1994,
  OPTkey =       {},
  OPTtype =      {},
  OPTnumber =    {},
  OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
  OPTmonth =     {},
  OPTnote =      {},
  OPTannote =    {}
}


@TechReport{Levitus94,
  author =       {S. Levitus and T.P.Boyer},
  title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
  institution =  {NOAA Atlas NESDIS 4},
  year =         1994,
  OPTkey =       {},
  OPTtype =      {},
  OPTnumber =    {},
  OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
  OPTmonth =     {},
  OPTnote =      {},
  OPTannote =    {}
}

 
@Article{lew-der:85,
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 title          = {The use of adjoint equations to solve a variational
                  adjustment problem with advective constraints},
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@techreport{lon:88,
 author         = {R.B. Long},
 year           = 1988,
 title          = {Notes on assimilating observations into
                  numerical models},
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 type           = {Report},
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                  }
 
@Article{maro-wun:93,
 author         = {J. Marotzke and C. Wunsch},
 year           = 1993,
 title          = {Finding the steady state of a general circulation
                  model through data assimilation:
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                  }
 
@Article{maro-eta:99,
 author         = {J. Marotzke and R. Giering and K.Q. Zhang and 
                  D. Stammer and C. Hill and T. Lee},
 year           = 1999,
 title          = {Construction of the adjoint MIT ocean general
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 journal        = jgr,
 volume         = {104, C12},
 pages          = {29,529--29,547},
                  }
 
@Article{mars-eta:97a,
 author         = {J. Marshall and C. Hill and L. Perelman and
                  A. Adcroft},
 year           = {1997a},
 title          = {Hydrostatic, quasi-hydrostatic and
                  nonhydrostatic ocean modeling},
 journal        = jgr,
 volume         = {102, C3},
 pages          = {5,733--5,752},
                  }
 
@Article{mars-eta:97b,
 author         = {J. Marshall and A. Adcroft and C. Hill and 
                  L. Perelman and C. Heisey},
 year           = {1997b},
 title          = {Hydrostatic, quasi-hydrostatic and
                  nonhydrostatic ocean modeling},
 journal        = jgr,
 volume         = {102, C3},
 pages          = {5,753--5,766},
                  }
 
@Article{mars-sha:98,
 author         = {J. Marshall and H. Jones and C. Hill},
 year           = 1998,
 title          = {Efficient ocean modeling using
                  non-hydrostatic algorithms},
 journal        = jms,
 volume         = {18},
 pages          = {115--134},
                  }
 
@Article{mcw:96,
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@Article{res-eta:98,
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 year           = 1998,
 title          = {Circumventing storage limitations in variational
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                  }
 
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 series         = {NATO ASI Series},
 volume         = {C 284},
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                  }

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 title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
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                  }
 
@techreport{sta-eta:97,
 author         = {D. Stammer and C. Wunsch and R. Giering and
                  Q. Zhang and J. Marotzke and J. Marshall and
                  C. Hill},
 year           = 1997,
 title          = {The global ocean circulation estimated from 
                  TOPEX/POSEIDON altimetry and a general circulation
                  model},
 institution    = {Center for Global Change Science, Massachusetts
                  Institute of Technology},
 type           = {Technical Report},
 number         = {49},
 pages          = {40 pp.},
 address        = {Cambridge (MA), USA},
                  }
 
@Article{sta-eta:01,
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                  C. Eckert and P. Heimbach and J. Marotzke and
                  A. Adcroft and C. Hill and J. Marshall},
 year           = 2001,
 title          = {The global ocean circulation during 1992 -- 1997,
                  estimated from ocean observations and a general
                  circulation model},
 journal        = jgr,
 note           = {in press},
                  }

@Article{Stommel66,
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                  I: Theory},
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                  }
 
@Article{tal:97,
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 title          = {Assimilation of observations, an introduction},
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 volume         = {75},
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                  }
 
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@techreport{tha:87,
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                  }
 
@Article{tha-lon:88,
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 year           = 1988,
 title          = {Fitting dynamics to data},
 journal        = jgr,
 volume         = {93, C2},
 pages          = {1,227--1,240},
                  }
 
@Article{tha:88,
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 year           = 1988,
 title          = {Fitting models to inadequate data by enforcing
                  spatial and temporal smoothness},
 journal        = jgr,
 volume         = {93},
 pages          = {10,655--10,665},
                  }
 
@Article{tha:89,
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 year           = 1989,
 title          = {The role of the Hessian matrix in fitting models
                  to measurements},
 journal        = jgr,
 volume         = {94, C5},
 pages          = {6,177--6,196},
                  }
 
@Article{tha-rag:94,
 author         = {W.C. Thacker and R. Raghunath},
 year           = 1994,
 title          = {The rigid lid's contribution to the ill-conditioning
                  of oceanic inverse problems},
 journal        = jgr,
 volume         = {99, C5},
 pages          = {10,131--10,141},
                  }
 
@Article{tzi-tha:89,
 author         = {E. Tziperman and W.C. Thacker},
 year           = {1989},
 title          = {An optimal control / adjoint equation approach
                  to studying the ocean general circulation},
 journal        = jpo,
 volume         = {19},
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                  }
 
@Article{tzi-eta:92a,
 author         = {E. Tziperman and W.C. Thacker and R.B. Long and
                  S. Hwang},
 year           = {1992a},
 title          = {Oceanic data analysis using a general circulation
                  model. I: Simulations},
 journal        = jpo,
 volume         = {22},
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                  }
 
@Article{tzi-eta:92b,
 author         = {E. Tziperman and W.C. Thacker and R.B. Long and
                  S. Hwang and S.R. Rintoul},
 year           = {1992b},
 title          = {Oceanic data analysis using a general circulation
                  model. I: A North Atlantic model},
 journal        = jpo,
 volume         = {22},
 pages          = {1458--1485},
                  }
 
@book{wun:96,
 author         = {C. Wunsch},
 title          = {The ocean circulation inverse problem},
 year           = 1996,
 publisher      = cup,
 address        = {Cambridge (UK)}, 
 pages          = {442 pp.},
                  }
                                  
@Article{zha-mar:99,
 author         = {K.Q. Zhang and J. Marotzke},
 year           = 1999,
 title          = {The importance of open-boundary estimation for an
                  Indian Ocean GCM-data synthesis},
 journal        = {J.~Marine Res.},
 volume         = {57},
 pages          = {305--334},
                  }


@InCollection{hill:95,
  author =       {Hill, C. and J. Marshall},
  title =        {Application of a Parallel Navier-Stokes Model to
                  Ocean Circulation in Parallel Computational Fluid
                  Dynamics},
  booktitle =    {Implementations and Results Using Parallel
                  Computers},
  pages =        {545-552},
  publisher =    {Elsevier Science B.V.: New York},
  year =         1995,
  editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
}


@Article{marshall:97a,
  author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
  title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
                 modeling},
  journal =      {JGR},
  year =         1997,
  volume =       102,
  number =       {C3},
  pages =        {5733-5752}
}

@Article{marshall:97b,
  author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
  title =        {A finite-volume, incompressible Navier Stokes model for
                  studies of the ocean on parallel computers},
  journal =      {JGR},
  year =         1997,
  volume =       102,
  number =       {C3},
  pages =        {5753-5766}
}

@Article{adcroft:97,
  author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
  title =        {Representation of topography by shaved cells in a height
                  coordinate ocean model},
  journal =      {MWR},
  year =         1997,
  volume =       125,
  pages =        {2293-2315}
}

@Article{visbeck:97,
  author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
  title =        {Specification of eddy transfer coefficients in
                  coarse-resolution ocean circulation models},
  journal =      {JPO},
  year =         1997,
  volume =       27,
  number =       3,
  pages =        {381-402}
}

@Article{shaw:98,
  author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
                  and Marshall, J.},
  title =        {A comparison of implicitly parallel multi-threaded and
                  data-parallel implementations of an ocean model based
                  on the Navier-Stokes equations},
  journal =      {J. of Parallel and Distributed Computing},
  year =         1998,
  volume =       48,
  number =       1,
  pages =        {1-51}
}

@Article{marshall:98,
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  pages =        {115-134}
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@Article{mjn:99,
  author =       {Marshall, J., Jamous, D and J. Nilsson},
  title =        {Reconciling `thermodynamic' and `dynamic' methods of
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  pages =        {545-572}
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@Article{ms:99,
  author =       {Marshall, J and F. Schott},
  title =        {Open ocean deep convection: observations, models and theory},
  journal =      {Rev. Geophys.},
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  volume =       37,
  number =       1,
  pages =        {1-64}
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@Article{adcroft:99,
  author =       {Adcroft, A., Hill C. and J. Marshall},
  title =        {A new treatment of the Coriolis terms in C-grid models
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  journal =      {MWR},
  year =         1999,
  volume =       127,
  pages =        {1928-1936}
}

@InProceedings{hill:99,
  author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
  title =        {A Strategy for Terascale Climate Modeling},
  booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
  year =         1999,
  pages = {406-425},
  publisher =    {World Scientific},
}

@Article{wardle:00,
  author =       {Wardle R. and Marshall J.},
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  number =       10,
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  note =         {in preparation}
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@Article{gkw:99,
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