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revision 1.8 by cnh, Mon Nov 19 20:04:25 2001 UTC revision 1.29 by cnh, Wed Jun 28 22:16:26 2006 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
15  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
16    @string{om      = {Ocean Modelling}}
17  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
18  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
19  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 67  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 114  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{dutk-etal:06,
135      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
136      title = {Controls on ocean productivity and air-sea carbon flux:
137               An adjoint model sensitivity study},
138      journal = grl,
139      year = {2006},
140      volume = {33},
141      pages  = {L02603},
142      doi    = {10.1029/2005GL024987},
143    }
144    
145  @Article{err:97,  @Article{err:97,
146   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 250  Line 277 
277   pages          = {401 pp.},   pages          = {401 pp.},
278                    }                    }
279                                                                        
280    @incollection{gri:89,
281     author         = {A. Griewank},
282     year           = 1989,
283     title          = {On automatic differentiation},
284     booktitle      = {Mathematical Programming: Recent Developments and
285                      Applications},
286     pages          = {83--108},
287     editor         = {M. Iri and K. Tanabe},
288     publisher      = {Kluwer},
289     address        = {Dordrecht, NL},
290                      }
291    
292    @Article{gri:92,
293      author =       {A.~Griewank},
294      title =        {Achieving logarithmic growth of temporal and spatial
295      complexity in reverse {A}utomatic {D}ifferentiation},
296      journal       = {Optimization Methods and Software},
297      year          = {1992},
298      volume        = {1},
299      pages         = {35--54}
300    }
301    
302  @book{gri:00,  @book{gri:00,
303   author         = {A. Griewank},   author         = {A. Griewank},
304   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 282  Line 331 
331    pages =        {241--248}    pages =        {241--248}
332  }  }
333    
334    @Article{held-suar:94,
335     author         = {I.M. Held and M.J. Suarez},
336     year           = {1994},
337     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
338     journal        = {Bulletin of the American Meteorological Society},
339     volume         = {75(10)},
340     pages          = {1825-1830}
341    }
342    
343  @Article{hil-eta:01,  @Article{hil-eta:01,
344   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
345                    J. Marshall},                    J. Marshall},
346   year           = {2001},   year           = {2002},
347   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
348                    circulation on carbon sequestration},                    circulation on carbon sequestration},
349   journal        = {Global Biogeochemical Cycles},   journal        = {Global Biogeochemical Cycles},
350   note           = {submitted},   note           = {submitted},
351                    }                    }
352    
353    @ARTICLE{hib80,
354      AUTHOR      = "W. D. {Hibler, III}",
355      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
356      JOURNAL     = mwr,
357      YEAR        = 1980,
358      VOLUME      = 1,
359      PAGES       = "1943-1973"
360    }
361    
362  @Article{Holland75,  @Article{Holland75,
363   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
364   year           = {1975a},   year           = {1975a},
# Line 410  Line 477 
477   pages          = {38 pp.},   pages          = {38 pp.},
478   address        = {Delft (NL)},   address        = {Delft (NL)},
479                    }                    }
480    
481    @ARTICLE{losc-heim:06,
482      author = {M. Losch and P. Heimbach},
483      title = {Adjoint sensitivity of an ocean general circulation model
484               to bottom topography},
485      journal = jpo,
486      year = {2006},
487      volume = {{in press}},
488      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
489    }
490    
491    
492  @Article{maro-wun:93,  @Article{maro-wun:93,
493   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 464  Line 542 
542   journal        = jms,   journal        = jms,
543   volume         = {18},   volume         = {18},
544   pages          = {115--134},   pages          = {115--134},
545     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
546     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
547                    }                    }
548    
549  @Article{mcw:96,  @Article{mcw:96,
# Line 474  Line 554 
554   volume         = {28},   volume         = {28},
555   pages          = {215--248},   pages          = {215--248},
556                    }                    }
557    
558    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
559    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
560    %% (Available from Unidata or in PostScript form by anonymous FTP from
561    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
562    %%   a hypertext version of the User's Guide available at
563    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
564    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
565    %%   also available.
566    
567    @TechReport{rew:97,
568      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
569      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
570                      An Interface for Data Access, Version 3},
571      institution =  {Unidata Program Center},
572      type =         {Report},
573      address =      {Boulder, Colorado},
574      year =         1997,
575      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
576    }
577    
578    
579  @Article{res-eta:98,  @Article{res-eta:98,
580   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
581   year           = 1998,   year           = 1998,
# Line 518  Line 619 
619   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
620   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
621   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
622     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
623                    }                    }
624    
625  @techreport{sta-eta:97,  @techreport{sta-eta:97,
# Line 536  Line 638 
638   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
639                    }                    }
640    
641  @Article{sta-eta:01,  @ARTICLE{stam-eta:01,
642   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
643                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
644                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
645   year           = 2001,    year = {2002a},
646   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
647                    estimated from ocean observations and a general    pages = {3118},
648                    circulation model},    doi   = {10.1029/2001JC000888},
649   journal        = jgr,  }
650   note           = {in press},  
                   }  
651    
652  @Article{Stommel66,  @Article{Stommel66,
653   author         = {H. Stommel},   author         = {H. Stommel},
# Line 708  Line 809 
809    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
810    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
811                   modeling},                   modeling},
812    journal =      {JGR},    journal =      jgr,
813    year =         1997,    year =         1997,
814    volume =       102,    volume =       102,
815    number =       {C3},    number =       {C3},
816    pages =        {5733-5752}    pages =        {5733-5752},
817      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
818  }  }
819    
820  @Article{marshall:97b,  @Article{marshall:97b,
821    author =       {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
822    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
823                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
824    journal =      {JGR},    journal =      jgr,
825    year =         1997,    year =         1997,
826    volume =       102,    volume =       102,
827    number =       {C3},    number =       {C3},
828    pages =        {5753-5766}    pages =        {5753-5766},
829      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
830  }  }
831    
832  @Article{adcroft:97,  @Article{adcroft:97,
833    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
834    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
835                    coordinate ocean model},                    coordinate ocean model},
836    journal =      {MWR},    journal =      mwr,
837    year =         1997,    year =         1997,
838    volume =       125,    volume =       125,
839    pages =        {2293-2315}    pages =        {2293-2315},
840      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
841      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
842    }
843    
844    @Article{adcroft:04a,
845      author =       {Adcroft, A. and J.-M. Campin},
846      title =        {Re-scaled height coordinates for accurate representation
847                      of free-surface flows in ocean circulation models},
848      journal =      om,
849      year =         2004,
850      volume =       7,
851      pages =        {269-284},
852      doi   =        {10.1016/j.ocemod.2003.09.003},
853    }
854    
855    @Article{adcroft:04b,
856      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
857      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
858                      on the Expanded Spherical Cube},
859      journal =      mwr,
860      year =         2004,
861      volume =       132,
862      pages =        {2845-2863},
863      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
864      doi     =      {10.1175/MWR2823.1},
865    }
866    
867    @Article{marshall:04,
868      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
869      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
870      journal =      mwr,
871      year =         2004,
872      volume =       132,
873      pages =        {2882-2894},
874      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
875      doi    =       {10.1175/MWR2835.1},
876  }  }
877    
878  @Article{visbeck:97,  @Article{visbeck:97,
879    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
880    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
881                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
882    journal =      {JPO},    journal =      jpo,
883    year =         1997,    year =         1997,
884    volume =       27,    volume =       27,
885    number =       3,    number =       3,
# Line 760  Line 899 
899    pages =        {1-51}    pages =        {1-51}
900  }  }
901    
 @Article{marshall:98,  
   author =       {Marshall, J., Jones, H. and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
902  @Article{mjn:99,  @Article{mjn:99,
903    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
904    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 793  Line 923 
923    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
924    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
925                    at both high and low resolutions},                    at both high and low resolutions},
926    journal =      {MWR},    journal =      mwr,
927    year =         1999,    year =         1999,
928    volume =       127,    volume =       127,
929    pages =        {1928-1936}    pages =        {1928-1936},
930      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
931      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
932  }  }
933    
934  @InProceedings{hill:99,  @InProceedings{hill:99,
935    author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},    author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
936    title =        {A Strategy for Terascale Climate Modeling},    title =        {A Strategy for Terascale Climate Modeling},
937    booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},    booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
938    year =         1999    year =         1999,
939      pages = {406-425},
940      publisher =    {World Scientific},
941  }  }
942    
943  @Article{wardle:00,  @Article{wardle:00,
944    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
945    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
946    journal =      {JPO},    journal =      jpo,
947    year =         2000,    year =         2000,
948    volume =       30,    volume =       30,
949    number =       10,    number =       10,
# Line 820  Line 954 
954    author =       {Adcroft, A. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
955    title =        {Comparison of finite volume schemes and direct-space-time    title =        {Comparison of finite volume schemes and direct-space-time
956                    methods for ocean circulation models},                    methods for ocean circulation models},
957    journal =      {OM},    journal =      om,
958    year =         2002,    year =         2002,
959    note =         {in preparation}    note =         {in preparation}
960  }  }
961    
962  @Article{adcroft:02,  @Article{adcroft:02,
963    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
964    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
965    journal =      {OM},    journal =      om,
966    year =         2002,    year =         2002,
967    note =         {in preparation}    note =         {in preparation}
968  }  }
# Line 844  Line 978 
978    volume =       17    volume =       17
979  }  }
980    
981    @Article{miller_white:84,
982      author =       {Miller, M. J. and White, A. A.},
983      title =        {On the non-hydrostatic equations in pressure
984                      and sigma coordiantes},
985      journal =      qjrms,
986      year =         1984,
987      volume =       110,
988      pages =        {515-533}
989    }
990    
991    @Article{white:89,
992      author =       {White, A. A.},
993      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
994      journal =      qjrms,
995      year =         1989,
996      volume =       115,
997      pages =        {1243-1251}
998    }
999    
1000  @Article{adcroft:98,  @Article{adcroft:98,
1001    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1002    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 867  Line 1020 
1020    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1021    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1022                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1023    journal =      {MWR},    journal =      mwr,
1024    year =         2000,    year =         2000,
1025    volume =       128,    volume =       128,
1026    number =       8,    number =       8,
# Line 878  Line 1031 
1031    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1032    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1033                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1034    journal =      {JCP},    journal =      jcp,
1035    year =         1993,    year =         1993,
1036    volume =       105,    volume =       105,
1037    number =       2,    number =       2,
# Line 886  Line 1039 
1039  }  }
1040    
1041  @Article{campin:02,  @Article{campin:02,
1042    author =       {Campin et al.},    author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1043    title =        {Conservation of properties in a free-surface model},    title =        {Conservation of properties in a free-surface model},
1044    journal =      {OM},    journal =      om,
1045    year =         2002,    year =         2004,
1046    note =         {in preparation}    volume =       6,
1047      pages =        {221-244}
1048  }  }
1049    
1050  @Article{dm:95,  @Article{dm:95,
1051    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1052    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1053    journal =      {JC},    journal =      jclim,
1054    year =         1995,    year =         1995,
1055    volume =       8,    volume =       8,
1056    number =       12,    number =       12,
# Line 906  Line 1060 
1060  @Article{ldd:97,  @Article{ldd:97,
1061    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1062    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1063    journal =      {JPO},    journal =      jpo,
1064    year =         1997,    year =         1997,
1065    volume =       27,    volume =       27,
1066    number =       11,    number =       11,
# Line 917  Line 1071 
1071    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1072    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1073                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1074    journal =      {JPO},    journal =      jpo,
1075    year =         1999,    year =         1999,
1076    volume =       29,    volume =       29,
1077    number =       8,    number =       8,
1078    pages =        {1682-1700}    pages =        {1682-1700}
1079  }  }
1080    
1081  @Article{roe:85,  @incollection{roe:85,
1082    author =       {Roe, P.L.},   author         = {P.L. Roe},
1083    title =        {Some contributions to the modeling of discontinuous flows},   year           = 1985,
1084    journal =      {Lect. Notes Appl. Math.},   title          = {Some contributions to the modelling of discontinuous flows},
1085    year =         1985,   booktitle      = {Large-Scale Computations in Fluid Mechanics},
1086    volume =       22,   series         = {Lectures in Applied Mathematics},
1087    pages =        {163-193}   volume         = 22,
1088     pages          = {163-193},
1089     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1090     publisher      = {American Mathematical Society},
1091     address        = {Providence, RI},
1092    }
1093    
1094    @Article{trenberth90,
1095      author =       {K. M. Trenberth and J. Olson and W. G. Large},
1096      title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind
1097                      Stress},
1098      journal =      jpo,
1099      year =         1990,
1100      volume =       20,
1101      pages =        {1742--1760}
1102    }
1103    
1104    @Article{molteni:03,
1105      author =       {F. Molteni},
1106      title =        {Atmospheric simulations using a GCM with simplified physical
1107                      parametrizations, I: Model climatology and variability in
1108                      multidecadal experiments},
1109      journal =      climd,
1110      year =         2003,
1111      volume =       20,
1112      pages =        {175--191}
1113    }
1114    
1115    @Article{jiang99,
1116      author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
1117      title =        {An Assessment of the {G}eophysical {F}luid
1118                      {D}ynamics {L}aboratory Ocean Model with Coarse
1119                      Resolution: Annual-Mean Climatology},
1120      journal =      jgr,
1121      year =         1999,
1122      volume =       104,
1123      number =       {C11},
1124      pages =        {25,623--25,645}
1125    }
1126    
1127    @Article{szoeke02,
1128      author =       {de Szoeke, Roland A. and Roger M. Samelson},
1129      title =        {The Duality between the {B}oussinesq and
1130                      {N}on-{B}oussinesq Hydrostatic Equations of Motion},
1131      journal =      jpo,
1132      year =         2002,
1133      volume =       32,
1134      number =       8,
1135      pages =        {2194--2203}
1136    }
1137    
1138    @Article{jackett95,
1139      author =       {David R. Jackett and Trevor J. McDougall},
1140      title =        {Minimal Adjustment of Hydrographic Profiles to
1141                      Achieve Static Stability},
1142      journal =      jaot,
1143      year =         1995,
1144      volume =       12,
1145      number =       4,
1146      pages =        {381--389}
1147    }
1148    
1149    @Article{mcdougall03,
1150      author =       {Trevor J. McDougall and David R. Jackett and Daniel
1151                      G. Wright and Rainer Feistel},
1152      title =        {Accurate and Computationally Efficient Algorithms
1153                      for Potential Temperature and Density of Seawater},
1154      journal =      jaot,
1155      year =         {2003},
1156      OPTkey =       {},
1157      OPTvolume =    {},
1158      OPTnumber =    {},
1159      OPTpages =     {},
1160      OPTmonth =     {},
1161      OPTnote =      {{\textup{In press}}},
1162      OPTannote =    {}
1163    }
1164    
1165    @TechReport{fofonoff83,
1166      author =       "Fofonoff, P. and Millard, Jr., R.C.",
1167      title =        "Algorithms for Computation of Fundamental Properties
1168                      of Seawater",
1169      institution =  "Unesco",
1170      year =         1983,
1171      type =         "Unesco Technical Papers in Marine Science",
1172      number =       44,
1173      pages =        {53 pp.}
1174    }
1175    
1176    @ARTICLE{zha98a,
1177      AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele
1178                     and D. A. Rothrock",
1179      TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1180      JOURNAL     = jpo,
1181      YEAR        = 1998,
1182      VOLUME      = 28,
1183      PAGES       = "191-217"
1184    }
1185    
1186    @ARTICLE{sem76,
1187      AUTHOR      = "Semtner, Jr., Albert J.",
1188      TITLE       = "A model for the thermodynamic growth of sea ice in
1189                     numerical investigations of climate",
1190      JOURNAL     = jpo,
1191      YEAR        = 1976,
1192      VOLUME      = 6,
1193      PAGES       = "379-389"
1194    }
1195    
1196    @ARTICLE{win00,
1197      AUTHOR      = "M. Winton",
1198      TITLE       = "A reformulated three-layer sea ice model",
1199      JOURNAL     = jaot,
1200      YEAR        = 2000,
1201      VOLUME      = 17,
1202      PAGES       = "525-531"
1203    }
1204    
1205    @ARTICLE{hib79,
1206      AUTHOR      = "W. D. {Hibler, III}",
1207      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1208      JOURNAL     = jpo,
1209      YEAR        = 1979,
1210      VOLUME      = 9,
1211      PAGES       = "815-846"
1212    }
1213    
1214    @ARTICLE{fla92,
1215      AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",
1216      TITLE       = "Modeling pack ice as a cavitating fluid",
1217      JOURNAL     = jpo,
1218      YEAR        = 1992,
1219      VOLUME      = 22,
1220      PAGES       = "626-651"
1221    }
1222    
1223    @ARTICLE{hun97,
1224      AUTHOR      = "E. C. Hunke and J. K. Dukowicz",
1225      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1226      JOURNAL     = jpo,
1227      YEAR        = 1997,
1228      VOLUME      = 27,
1229      PAGES       = "1849-1867"
1230    }
1231    
1232    @ARTICLE{zha00,
1233      AUTHOR      = "Jinlun Zhang and Drew Rothrock",
1234      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1235      JOURNAL     = jgr,
1236      YEAR        = 2000,
1237      VOLUME      = 105,
1238      PAGES       = "3325-3338"
1239    }
1240    
1241    @Article{Shapiro_70,
1242      author =       {Shapiro, R.},
1243      title =        {Smoothing, filtering, and boundary effects},
1244      journal =      {Reviews of Geophysics and Space Physics},
1245      year =         {1970},
1246      volume =       {8},
1247      number =       {2},
1248      pages =        {359--387},
1249    }
1250    
1251    @TechReport{Dutkiewicz_etal_05,
1252      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1253      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1254                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1255                      in Climate Change Studies, Report 122},
1256      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1257      year =         {2005},
1258      OPTnumber =    {122},
1259      address =      {Cambridge, MA},
1260      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1261    }
1262    
1263    @Article{Follows_etal_05,
1264      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1265      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1266                      Biogeochemistry Models},
1267      journal =      {Ocean Modeling},
1268      year =         {{in press}},
1269      OPTkey =       {},
1270      OPTvolume =    {},
1271      OPTnumber =    {},
1272      OPTpages =     {},
1273    }
1274    
1275    @Article{McKinley_etal_04,
1276      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1277      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1278                      Equatorial Pacific and the North Atlantic},
1279      journal =      {Global Biogeochemical Cycles},
1280      year =         {2004},
1281      OPTkey =       {},
1282      volume =       {18},
1283      number =       {doi:10.1029/2003GB002179},
1284      OPTpages =     {},
1285    }
1286    
1287    @TechReport{Trenberth_etal_89,
1288      author =       {K. Trenberth and J. Olson and W. Large},
1289      title =        {A global wind stress climatology based on ECMWF analyses},
1290      institution =  {NCAR},
1291      year =         {1989},
1292      OPTkey =       {},
1293      OPTtype =      {},
1294      number =       {NCAR/TN-338+STR},
1295      address =      {Boulder, CO},
1296      OPTmonth =     {},
1297    }
1298    
1299    @Article{Wanninkhof_92,
1300      author =       {R. Wanninkhof},
1301      title =        {Relationship between wind speed and gas exchange over the ocean},
1302      journal =      jgr,
1303      year =         {1992},
1304      OPTkey =       {},
1305      volume =       {97},
1306      OPTnumber =    {},
1307      pages =        {7373--7382},
1308      OPTmonth =     {},
1309    }
1310    
1311    @incollection{black:77,
1312     author       = {A. K. Blackadar},
1313     year         = {1977},
1314     title        = {High Resolution Models of the Planetary Boundary Layer.},
1315     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1316     editor       = {Pfafflin and Zeigler},
1317     publisher    = {Gordon and Breach, Scientific Publishers}
1318    }
1319    
1320    @Article{chou:92,
1321     author       = {M-D. Chou},
1322     year         = {1992},
1323     title        = {A solar radiation model for use in climate studies.},
1324     journal      = jas,
1325     volume       = {49},
1326     pages        = {762-772}
1327    }
1328    
1329    @Article{chou:90,
1330     author       = {M-D. Chou},
1331     year         = {1990},
1332     title        = {Parameterizations for the absorption of solar radiation
1333                       by O$_2$ and CO$_2$ with applications to climate studies.},
1334     journal      = jclim,
1335     volume       = {3},
1336     pages        = {209-217}
1337    }
1338    
1339    @techreport{chsz:94,
1340     author       = {M.-D. Chou and M.J.Suarez},
1341     year         = {1994},
1342     title        = {An efficient thermal infrared radiation parameterization
1343    for use in general circulation models},
1344     institution  = {National Aeronautics and Space Administration},
1345     type         = {NASA Technical Memorandum},
1346     number       = {104606-Vol 3},
1347     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1348     note         = {http://www.gmao.nasa.gov/}
1349    }
1350    
1351    @Article{clarke:70,
1352     author       = {R. H. Clarke},
1353     year         = {1970},
1354     title        = {Observational studies in the atmospheric boundary layer.},
1355     journal      = qjrms,
1356     volume       = {96},
1357     pages        = {91-114}
1358    }
1359    
1360    @Article{deftow:94,
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1363     title        = {NDVI-derived Land Cover Classification at Global Scales. },
1364     journal      = {Int'l J. Rem. Sens.} ,
1365     volume       = {15},
1366     pages        = {3567-3586}
1367    }
1368    
1369    @Article{dorsell:89,
1370     author       = { J. L. Dorman and P. J. Sellers},
1371     year         = {1989},
1372     title        = {A global climatology of albedo, roughness length and stomatal
1373    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1374     journal      = jam,
1375     volume       = {28},
1376     pages        = {833-855}
1377    }
1378    
1379    @Article{helflab:88,
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1381     year         = {1988},
1382     title        = { Design of a non-singular level 2.5 second-order closure
1383    model for the prediction of atmospheric turbulence. },
1384     journal      = jas,
1385     volume       = {45},
1386     pages        = {113-132}
1387    }
1388    
1389    @inproceedings{helfetal:91,
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1391     year         = {1991},
1392     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1393     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1394     year         = 1991,
1395     pages        = {406-425},
1396     publisher    = {American Meteorological Society}
1397    }
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1404    Continental Moisture Budget of the United States. },
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1407     pages        = {784-806}
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1416     pages        = {91-112}
1417    }
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1423     institution  = {National Aeronautics and Space Administration},
1424     type         = {NASA Technical Memorandum},
1425     number       = {104538},
1426     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1427     note         = {http://www.gmao.nasa.gov/},
1428    }
1429    
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1433     title        = { Modeling the Land Surface Boundary
1434    in Climate Models as a Composite of Independent Vegetation Stands.},
1435     journal      = jgr,
1436     volume       = {97},
1437     pages        = {2697-2715}
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1463    convection for general circulation models.},
1464     journal      = mwr,
1465     volume       = {120},
1466     pages        = {978-1002}
1467    }
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1472     title        = {Tower Micrometeorology. },
1473     booktitle    = {Workshop on Micrometeorology},
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1475     publisher    = {American Meteorological Society}
1476    }
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1481     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
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1490     title        = {  A computation of the stratospheric
1491    diabatic circulation using an accurate radiative transfer model},
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1494     pages        = {859-876}
1495    }
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1499     year         = {1988},
1500     title        = {  The roles of dry convection, cloud-radiation feedback processes
1501    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
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1504     pages        = {2366-2387}
1505    }
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1509     year         = {1996},
1510     title        = {  Dynamical aspects of climate simulations Using the GEOS
1511    General Circulation Model},
1512     institution  = {National Aeronautics and Space Administration},
1513     type         = {NASA Technical Memorandum},
1514     number       = {104606 Volume 10},
1515     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1516     note         = {http://www.gmao.nasa.gov/},
1517    }
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1522     title        = {Heat and mass transfer between a rough wall and
1523    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1524     journal      = jfm,
1525     volume       = {62},
1526     pages        = {601-623}
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1533    atmospheric boundary layer.},
1534     journal      = {Atmos. Environ.},
1535     volume       = {11},
1536     pages        = {1015-1024}
1537    }
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1541     year         = {1995},
1542     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1543     journal      = qjrms,
1544     volume       = {122},
1545     pages        = {903-927}
1546    }
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1550                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1551                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1552                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
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1554     title          = {An intercomparison of radiatively driven entrainment and turbulence
1555                      in a smoke cloud, as simulated by different numerical models.},
1556     journal        = qjrms,
1557     volume         = {125},
1558     pages          = {391-423}
1559                      }
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1565     journal        = {Climate Dyn.},
1566     volume         = {15},
1567     pages          = {293-318}
1568                      }
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1573     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1574                      Implications for the Simulation of the Madden-Julian Oscillation.},
1575     journal        = {Climate Dyn.},
1576     volume         = {17},
1577     pages          = {777-794}
1578                      }
1579    
1580    @Article{kal:89,
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1582                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
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1584     title          = {Rules for Interchange of Physical Parameterizations.},
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1586     volume         = {70},
1587     pages          = {620-622}
1588                      }
1589    
1590    @Article{wo:98,
1591     author         = {D. Williamson and J.G. Olsen},
1592     year           = 1998,
1593     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1594     journal        = mwr,
1595     volume         = {126},
1596     pages          = {991-1000}
1597                      }
1598    @TechReport{MPI-std-20,
1599      author =       {{Message Passing Interface Forum}}},
1600      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1601      institution =  {mpi-forum.org},
1602      year =         {1998},
1603  }  }
1604    
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