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# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6  @string{jgr     = {J.~Geophys.~Res.}}  @string{cch     = {Clim.\ Change}}
7  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{cup     = {Cambridge University Press}}
8    @string{dao     = {Dyn.~Atmos.~Oceans}}
9    @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
10    @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
11    @string{dsr     = {Deep Sea Res.}}
12    @string{ecmwf   = {ECMWF}}
13    @string{eos     = {Eos~Trans.\ AGU}}
14    @string{esa     = {European Space Agency (ESA)}}
15    @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16    @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
17    @string{gaos    = {Global Atmos.~Ocean System}}
18    @string{grl     = {Geophys.~Res.~Lett.}}
19    @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
20    @string{ifremer = {IFREMER/CERSAT}}
21    @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
22    @string{jam     = {J.~Appl.~Meteor.}}
23    @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
24  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
 @string{jpo     = {J.~Phys.~Oceanogr.}}  
25  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
26  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{jcp     = {J.~Comput.~Phys.}}
27  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
28  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jgr     = {J.~Geophys.~Res.}}
29    @string{ijrs    = {Int.~J.~Remote Sensing}}
30  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
31  @string{om      = {Ocean Modelling}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
32  @string{gaos    = {Global Atmos.~Ocean System}}  @string{mpi     = {MPI f\"ur Meteorologie}}
 @string{grl     = {Geophys.~Res.~Lett.}}  
 @string{dsr     = {Deep Sea Res.}}  
 @string{dao     = {Dyn.~Atmos.~Oceans}}  
33  @string{mwr     = {Mon.~Wea.~Rev.}}  @string{mwr     = {Mon.~Wea.~Rev.}}
34    @string{om      = {Ocean Modelling}}
35    @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
37    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38  @string{tel     = {Tellus}}  @string{tel     = {Tellus}}
 @string{cup     = {Cambridge University Press}}  
 @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}  
 @string{ifremer = {IFREMER/CERSAT}}  
 @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}  
 @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}  
 @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}  
 @string{mpi     = {MPI f\"ur Meteorologie}}  
 @string{ecmwf   = {ECMWF}}  
 @string{estec   = {European Space Research and Technology Centre  
                         (ESTEC)}}  
 @string{esa     = {European Space Agency (ESA)}}  
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 41  Line 47 
47   volume         = {3},   volume         = {3},
48   pages          = {625--638},   pages          = {625--638},
49                    }                    }
50    
51  @incollection{bis:94,  @incollection{bis:94,
52   author         = {C.H. Bishof},   author         = {C.H. Bishof},
53   year           = 1994,   year           = 1994,
# Line 54  Line 60 
60   publisher      = {Kluwer},   publisher      = {Kluwer},
61   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
62                    }                    }
63    
64  @techreport{bis-eta:94,  @techreport{bis-eta:94,
65   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
66                    A. Maurer},                    A. Maurer},
# Line 65  Line 71 
71                    Computer Science Division},                    Computer Science Division},
72   type           = {Argonne Preprint},   type           = {Argonne Preprint},
73   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
74   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
75                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @Article{bouillon13,
80      author =       {Sylvain Bouillon and Thierry Fichefet and Vincent
81                      Legat and Gurvan Madec},
82      title =        {The Elastic-Viscous-Plastic Method Revisited},
83      journal =      om,
84      volume =       71,
85      number =       0,
86      pages =        {2--12},
87      year =         2013,
88      note =         {Arctic Ocean},
89      issn =         {1463-5003},
90      doi =          {10.1016/j.ocemod.2013.05.013},
91      url =          {http://dx.doi.org/10.1016/j.ocemod.2013.05.013},
92    }
93    @ARTICLE{bryan:84,
94      author = {Kirk Bryan},
95      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
96      journal = jpo,
97      year = {1984},
98      volume = {14},
99      number = {4},
100      pages = {666-673},
101    }
102    
103    @ARTICLE{bugi-hill:06,
104      author = {V. Bugnion and C. Hill},
105      title = {Equilibration mechanisms in an adjoint ocean general
106               circulation model},
107      journal = {Ocean Dynamics},
108      year = {2006},
109      volume = {56},
110      number = {1},
111      pages = {51-61},
112      doi   = {10.1007/s10236-005-0052-z},
113    }
114    
115  @techreport{bis-roh:97,  @techreport{bis-roh:97,
116   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
117   year           = 1997,   year           = 1997,
# Line 79  Line 121 
121                    Computer Science Division},                    Computer Science Division},
122   type           = {Argonne Preprint},   type           = {Argonne Preprint},
123   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
124   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
125                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
126   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
127                    }                    }
128    
129    @Article{castro-morales14,
130      author =       {Karel Castro-Morales and Frank Kauker and Martin
131                      Losch and Stefan Hendricks and Kathrin Riemann-Campe
132                      and R{\"u}diger Gerdes},
133      title =        {Sensitivity of Simulated {A}rctic Sea Ice to
134                      Realistic Ice Thickness Distributions and Snow
135                      Parameterizations},
136      journal =      jgr,
137      issn =         {2169-9291},
138      year =         2014,
139      volume =       119,
140      number =       1,
141      pages =        {559--571},
142      url =          {http://dx.doi.org/10.1002/2013JC009342},
143      doi =          {10.1002/2013JC009342},
144    }
145    
146  @Article{cou-tal:87,  @Article{cou-tal:87,
147   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
148   year           = 1987,   year           = 1987,
149   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
150                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
151                    II: Numerical results},                    II: Numerical results},
152   journal        = qjrms,   journal        = qjrms,
153   volume         = {113},   volume         = {113},
154   pages          = {1329--1347},   pages          = {1329--1347},
155                    }                    }
156    
157  @Article{cou-tal:90,  @Article{cou-tal:90,
158   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
159   year           = 1990,   year           = 1990,
# Line 105  Line 164 
164   volume         = {42A},   volume         = {42A},
165   pages          = {531--549},   pages          = {531--549},
166                    }                    }
167    
168  @Article{cou-eta:94,  @Article{cou-eta:94,
169   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
170                    A. Hollingsworth},                    A. Hollingsworth},
# Line 116  Line 175 
175   volume         = {120},   volume         = {120},
176   pages          = {1367--1387},   pages          = {1367--1387},
177                    }                    }
178    
179    @ARTICLE{durr:91,
180      author = {Dale R. Durran},
181      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
182               to Leapfrog Time Differencing},
183      journal = mwr,
184      year = {1991},
185      volume = {119},
186      pages  = {702-720},
187    }
188    
189    
190    @ARTICLE{dutk-etal:06,
191      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
192      title = {Controls on ocean productivity and air-sea carbon flux:
193               An adjoint model sensitivity study},
194      journal = grl,
195      year = {2006},
196      volume = {33},
197      pages  = {L02603},
198      doi    = {10.1029/2005GL024987},
199    }
200    
201  @Article{err:97,  @Article{err:97,
202   author         = {R.M. Errico},   author         = {R.M. Errico},
203   year           = 1997,   year           = 1997,
# Line 125  Line 206 
206   volume         = {78},   volume         = {78},
207   pages          = {2577--2591},   pages          = {2577--2591},
208                    }                    }
209    
210  @Article{far-moo:92,  @Article{far-moo:92,
211   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
212   year           = {1992},   year           = {1992},
# Line 135  Line 216 
216   volume         = {22},   volume         = {22},
217   pages          = {338--349},   pages          = {338--349},
218                    }                    }
219    
220  @Article{far-ioa:96a,  @Article{far-ioa:96a,
221   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
222   year           = {1996a},   year           = {1996a},
# Line 145  Line 226 
226   volume         = {53},   volume         = {53},
227   pages          = {2025--2040},   pages          = {2025--2040},
228                    }                    }
229    
230  @Article{far-ioa:96b,  @Article{far-ioa:96b,
231   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
232   year           = {1996b},   year           = {1996b},
# Line 155  Line 236 
236   volume         = {53},   volume         = {53},
237   pages          = {2041--2053},   pages          = {2041--2053},
238                    }                    }
239    
240  @techreport{fau-pap:98,  @techreport{fau-pap:98,
241   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
242   year           = 1998,   year           = 1998,
# Line 168  Line 249 
249                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
250   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
251                    }                    }
252    
253  @Article{fau:00,  @Article{fau:00,
254   author         = {C. Faure},   author         = {C. Faure},
255   year           = {2000},   year           = {2000},
# Line 176  Line 257 
257   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
258   note           = {in press},   note           = {in press},
259                    }                    }
260    
261    @Article{fer-eta:05,
262     author         = {D. Ferreira and J. Marshall and P. Heimbach},
263     year           = 2005,
264     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
265                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
266     journal        = jpo,
267     volume         = {35},
268     pages          = {1891--1910},
269                      }
270    
271    @Article{for-eta:15,
272     author         = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.},
273     title          = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation},
274     journal        = {Geoscientific Model Development},
275     volume         = {8},
276     year           = {2015},
277     number         = {10},
278     pages          = {3071--3104},
279     url            = {http://www.geosci-model-dev.net/8/3071/2015/},
280     doi            = {10.5194/gmd-8-3071-2015}
281    }
282    
283    @Article{gas-eta:90,
284     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
285     year           = 1990,
286     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
287                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
288                       Upper Ocean Study Site},
289     journal        = jgr,
290     volume         = {95 (C9)},
291     pages          = {16,179--16,193},
292                      }
293    
294  @Article{gen-mcw:90,  @Article{gen-mcw:90,
295   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
296   year           = 1990,   year           = 1990,
297   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
298   journal        = jpo,   journal        = jpo,
299   volume         = {20},   volume         = {20},
300   pages          = {150--155},   pages          = {150--155},
301                    }                    }
302    
303  @Article{gen-eta:95,  @Article{gen-eta:95,
304   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
305   year           = 1995,   year           = 1995,
306   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
307   journal        = jpo,   journal        = jpo,
308   volume         = {25},   volume         = {25},
309   pages          = {463--474},   pages          = {463--474},
310                    }                    }
311    
312  @Article{gie-kam:98,  @Article{gie-kam:98,
313   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
314   year           = 1998,   year           = 1998,
# Line 209  Line 321 
321  @techreport{gie:99,  @techreport{gie:99,
322   author         = {R. Giering},   author         = {R. Giering},
323   year           = 1999,   year           = 1999,
324   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
325                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
326   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
327   type           = {Report},   type           = {Report},
# Line 218  Line 330 
330                    02139; USA},                    02139; USA},
331   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
332                    }                    }
333    
334  @incollection{gie:00,  @incollection{gie:00,
335   author         = {R. Giering},   author         = {R. Giering},
336   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 242  Line 354 
354   volume         = {45},   volume         = {45},
355   pages          = {407--435},   pages          = {407--435},
356                    }                    }
357    
358  @book{gil-eta:81,  @book{gil-eta:81,
359   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
360   title          = {Practical optimization},   title          = {Practical optimization},
361   year           = 1981,   year           = 1981,
362   publisher      = {Academic Press},   publisher      = {Academic Press},
363   address        = {London},   address        = {London},
364   pages          = {401 pp.},   pages          = {401 pp.},
365                    }                    }
366                                                                      
367  @incollection{gri:89,  @incollection{gri:89,
368   author         = {A. Griewank},   author         = {A. Griewank},
369   year           = 1989,   year           = 1989,
# Line 263  Line 375 
375   publisher      = {Kluwer},   publisher      = {Kluwer},
376   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
377                    }                    }
378    
379  @Article{gri:92,  @Article{gri:92,
380    author =       {A.~Griewank},    author =       {A.~Griewank},
381    title =        {Achieving logarithmic growth of temporal and spatial    title =        {Achieving logarithmic growth of temporal and spatial
# Line 282  Line 394 
394   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
395   volume         = {19},   volume         = {19},
396   publisher      = {SIAM},   publisher      = {SIAM},
397   address        = {Philadelphia},   address        = {Philadelphia},
398   pages          = {369 pp.},   pages          = {369 pp.},
399                    }                    }
400                                                                      
401  @Article{hal-eta:82,  @Article{hal-eta:82,
402   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
403   year           = 1982,   year           = 1982,
# Line 305  Line 417 
417    volume =       1,    volume =       1,
418    pages =        {241--248}    pages =        {241--248}
419  }  }
420    
421    @Article{held-suar:94,
422     author         = {I.M. Held and M.J. Suarez},
423     year           = {1994},
424     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
425     journal        = {Bulletin of the American Meteorological Society},
426     volume         = {75(10)},
427     pages          = {1825-1830}
428    }
429    
430  @Article{hil-eta:01,  @Article{hil-eta:01,
431   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
432                    J. Marshall},                    J. Marshall},
433   year           = {2002},   year           = {2002},
434   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
435                    circulation on carbon sequestration},                    circulation on carbon sequestration},
436   journal        = {Global Biogeochemical Cycles},   journal        = {Global Biogeochemical Cycles},
437   note           = {submitted},   note           = {submitted},
438                    }                    }
439    
440    @ARTICLE{hib80,
441      author =       {Hibler, III, William D.},
442      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
443      JOURNAL     = mwr,
444      YEAR        = 1980,
445      VOLUME      = 1,
446      PAGES       = "1943-1973"
447    }
448    
449  @Article{Holland75,  @Article{Holland75,
450   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
451   year           = {1975a},   year           = {1975a},
452   title          = {On the origin of mesoscale eddies and their contribution   title          = {On the origin of mesoscale eddies and their contribution
453                     to the general circulation of the ocean. I. A preliminary                     to the general circulation of the ocean. I. A preliminary
454                     numerical experiment},                     numerical experiment},
455   journal        = jpo,   journal        = jpo,
456   volume         = {5},   volume         = {5},
# Line 330  Line 460 
460  @Article{hol-lin:75b,  @Article{hol-lin:75b,
461   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
462   year           = {1975b},   year           = {1975b},
463   title          = {On the origin of mesoscale eddies and their contribution   title          = {On the origin of mesoscale eddies and their contribution
464                     to the general circulation of the ocean. II. A parameter                     to the general circulation of the ocean. II. A parameter
465                     study},                     study},
466   journal        = jpo,   journal        = jpo,
# Line 338  Line 468 
468   pages          = {658-669}   pages          = {658-669}
469                    }                    }
470    
471    @Article{jam-oze:86,
472     author         = {B.M. Jamart and J. Ozer},
473     year           = {1986},
474     title          = {Numerical boundary layers and spurious residual flows},
475     journal        = jgr,
476     volume         = {91},
477     pages          = {10,621-10,631}
478                      }
479    
480  @book{kas-eta:00,  @book{kas-eta:00,
481   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
482                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 353  Line 492 
492  @Article{lar-eta:94,  @Article{lar-eta:94,
493   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
494   year           = 1994,   year           = 1994,
495   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
496   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
497   volume         = {32},   volume         = {32},
498   pages          = {363--403},   pages          = {363--403},
499                    }                    }
500    
501  @Article{lar-eta:97,  @Article{lar-eta:97,
502   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
503                    and J.C. McWilliams},                    and J. C. McWilliams},
504   year           = 1997,   year           = 1997,
505   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
506                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
507   journal        = jpo,   journal        = jpo,
508   volume         = {27},   volume         = {27},
509     number         = 11,
510   pages          = {2418--2447},   pages          = {2418--2447},
511                    }                    }
512    
513  @Article{led-tal:86,  @Article{led-tal:86,
514   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
515   year           = 1986,   year           = 1986,
# Line 412  Line 550 
550    OPTannote =    {}    OPTannote =    {}
551  }  }
552    
553    
554  @Article{lew-der:85,  @Article{lew-der:85,
555   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
556   year           = {1985},   year           = {1985},
# Line 422  Line 560 
560   volume         = {37A},   volume         = {37A},
561   pages          = {309--322},   pages          = {309--322},
562                    }                    }
563    
564  @techreport{lon:88,  @techreport{lon:88,
565   author         = {R.B. Long},   author         = {R.B. Long},
566   year           = 1988,   year           = 1988,
# Line 434  Line 572 
572   pages          = {38 pp.},   pages          = {38 pp.},
573   address        = {Delft (NL)},   address        = {Delft (NL)},
574                    }                    }
575    
576    @ARTICLE{losc-heim:06,
577      author =       {Martin Losch and Patrick Heimbach},
578      title =        {Adjoint Sensitivity of an Ocean General Circulation
579                      Model to Bottom Topography},
580      journal =      jpo,
581      year =         2007,
582      volume =       37,
583      doi =          {10.1175/JPO3017.1},
584      number =       2,
585      pages =        {377--393},
586      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
587    }
588    
589    
590  @Article{maro-wun:93,  @Article{maro-wun:93,
591   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
592   year           = 1993,   year           = 1993,
# Line 445  Line 597 
597   volume         = {98, C11},   volume         = {98, C11},
598   pages          = {20,149--20,167},   pages          = {20,149--20,167},
599                    }                    }
600    
601  @Article{maro-eta:99,  @Article{maro-eta:99,
602   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
603                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
604   year           = 1999,   year           = 1999,
605   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 457  Line 609 
609   volume         = {104, C12},   volume         = {104, C12},
610   pages          = {29,529--29,547},   pages          = {29,529--29,547},
611                    }                    }
612    
613  @Article{mars-eta:97a,  @Article{mars-eta:97a,
614   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
615                    A. Adcroft},                    A. Adcroft},
# Line 468  Line 620 
620   volume         = {102, C3},   volume         = {102, C3},
621   pages          = {5,733--5,752},   pages          = {5,733--5,752},
622                    }                    }
623    
624  @Article{mars-eta:97b,  @Article{mars-eta:97b,
625   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
626                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
627   year           = {1997b},   year           = {1997b},
628   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 479  Line 631 
631   volume         = {102, C3},   volume         = {102, C3},
632   pages          = {5,753--5,766},   pages          = {5,753--5,766},
633                    }                    }
634    
635  @Article{mars-sha:98,  @Article{mars-eta:98,
636   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
637   year           = 1998,   year           = 1998,
638   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 488  Line 640 
640   journal        = jms,   journal        = jms,
641   volume         = {18},   volume         = {18},
642   pages          = {115--134},   pages          = {115--134},
643     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
644     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
645                    }                    }
646    
647  @Article{mcw:96,  @Article{mol:09,
648   author         = {J. McWilliams},   author         = {Andrea Molod},
649   year           = 1996,   year           = 2009,
650   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
651   journal        = arfm,                     algorithm and tests},
652   volume         = {28},   journal        = tel,
653   pages          = {215--248},   volume         = {61A},
654     pages          = {381--393},
655                    }                    }
656    
657  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
658  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
659  %% (Available from Unidata or in PostScript form by anonymous FTP from  %% (Available from Unidata or in PostScript form by anonymous FTP from
660  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
661  %%   a hypertext version of the User's Guide available at  %%   a hypertext version of the User's Guide available at
662  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
663  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
664  %%   also available.  %%   also available.
665    
666    @incollection{naum-etal:06,
667            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
668            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
669            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
670            Pages = {~},
671            Publisher = {TU Delft},
672            Title = {Adjoint code by source transformation with OpenAD/F},
673            Year = {2006}}
674    
675    @Article{orl:76,
676     author         = {I. Orlanski},
677     year           = 1976,
678     title          = {A simple boundary condition for unbounded hyperbolic flows},
679     journal        = jcp,
680     volume         = {21},
681     pages          = {251--269},
682                    }
683    
684    @Article{pal-rom:97,
685     author         = {T. Paluszkiewicz and R.D. Romea},
686     year           = 1997,
687     title          = {A one-dimensional model for the parameterization
688                      of deep convection in the ocean},
689     journal        = dao,
690     volume         = {26},
691     pages          = {95--130},
692                      }
693    
694  @TechReport{rew:97,  @TechReport{rew:97,
695    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
696    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
697                    An Interface for Data Access, Version 3},                    An Interface for Data Access, Version 3},
698    institution =  {Unidata Program Center},    institution =  {Unidata Program Center},
699    type =         {Report},    type =         {Report},
# Line 529  Line 712 
712   volume         = {19},   volume         = {19},
713   pages          = {1586--1605},   pages          = {1586--1605},
714                    }                    }
715    
716  @Article{ros-eta:93,  @Article{ros-eta:93,
717   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
718   year           = 1993,   year           = 1993,
# Line 538  Line 721 
721   volume         = {45A},   volume         = {45A},
722   pages          = {558--568},   pages          = {558--568},
723                    }                    }
724    
725  @incollection{she-and:89,  @incollection{she-and:89,
726   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
727   year           = 1989,   year           = 1989,
728   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
729                    technique},                    technique},
730   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
731                    Combining data and dynamics},                    Combining data and dynamics},
# Line 554  Line 737 
737   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
738                    }                    }
739    
740    @article{utke-etal:08,
741      Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
742                      and M. Strout and P. Heimbach and C. Hill and
743                      D. Ozyurt and C. Wunsch},
744      Date-Modified ={2007-11-19 10:15:08 -0500},
745      Journal =      {{ACM} Transactions on Mathematical Software},
746      Pages =        {~},
747      Title =        {OpenAD/F: A modular open source tool for automatic
748                      differentiation of Fortran codes},
749      Volume =       {34(4)},
750      Year =         2008
751    }
752    
753  @Article{DaSilva94,  @Article{DaSilva94,
754   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
755   year           = 1994,   year           = 1994,
# Line 563  Line 759 
759   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
760   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
761   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
762     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
763                    }                    }
764    
765  @techreport{sta-eta:97,  @techreport{stam-etal:97,
766   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
767                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
768                    C. Hill},                    C. Hill},
769   year           = 1997,   year           = 1997,
770   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
771                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
772                    model},                    model},
773   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 580  Line 777 
777   pages          = {40 pp.},   pages          = {40 pp.},
778   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
779                    }                    }
780    
781  @Article{sta-eta:01,  @article{stam-etal:02,
782   author         = {D. Stammer and C. Wunsch and R. Giering and    author =       {D. Stammer and C. Wunsch and R. Giering and
783                    C. Eckert and P. Heimbach and J. Marotzke and                    C. Eckert and P. Heimbach and J. Marotzke and
784                    A. Adcroft and C. Hill and J. Marshall},                    A. Adcroft and C.N. Hill and J. Marshall},
785   year           = 2001,    title =        {The global ocean circulation and transports during
786   title          = {The global ocean circulation during 1992 -- 1997,                    1992 -- 1997, estimated from ocean observations and
787                    estimated from ocean observations and a general                    a general circulation model.},
788                    circulation model},    journal =      jgr,
789   journal        = jgr,    year =         {2002a},
790   note           = {in press},    volume =       {107(C9)},
791                    }    pages =        {3118},
792      doi =          {10.1029/2001JC000888},
793    }
794    
795    
796  @Article{Stommel66,  @Article{Stommel66,
797   author         = {H. Stommel},   author         = {H. Stommel},
# Line 605  Line 805 
805  @Article{tal-cou:87,  @Article{tal-cou:87,
806   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
807   year           = 1987,   year           = 1987,
808   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
809                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
810                    I: Theory},                    I: Theory},
811   journal        = qjrms,   journal        = qjrms,
812   volume         = {113},   volume         = {113},
813   pages          = {1311--1328},   pages          = {1311--1328},
814                    }                    }
815    
816  @Article{tal:97,  @Article{tal:97,
817   author         = {O. Talagrand},   author         = {O. Talagrand},
818   year           = 1997,   year           = 1997,
# Line 621  Line 821 
821   volume         = {75},   volume         = {75},
822   pages          = {191--209},   pages          = {191--209},
823                    }                    }
824    
825  @book{tar:87,  @book{tar:87,
826   author         = {A. Tarantola},   author         = {A. Tarantola},
827   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
828                    and model parameter estimation},                    and model parameter estimation},
829   year           = 1987,   year           = 1987,
830   publisher      = {Elsevier},   publisher      = {Elsevier},
831   address        = {Amsterdam},   address        = {Amsterdam},
832   pages          = {629 pp.},   pages          = {629 pp.},
833                    }                    }
834                                                                      
835  @techreport{tha:87,  @techreport{tha:87,
836   author         = {W.C. Thacker},   author         = {W.C. Thacker},
837   year           = 1987,   year           = 1987,
# Line 643  Line 843 
843   pages          = {64 pp.},   pages          = {64 pp.},
844   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
845                    }                    }
846    
847  @Article{tha-lon:88,  @Article{tha-lon:88,
848   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
849   year           = 1988,   year           = 1988,
# Line 652  Line 852 
852   volume         = {93, C2},   volume         = {93, C2},
853   pages          = {1,227--1,240},   pages          = {1,227--1,240},
854                    }                    }
855    
856  @Article{tha:88,  @Article{tha:88,
857   author         = {W.C. Thacker},   author         = {W.C. Thacker},
858   year           = 1988,   year           = 1988,
# Line 662  Line 862 
862   volume         = {93},   volume         = {93},
863   pages          = {10,655--10,665},   pages          = {10,655--10,665},
864                    }                    }
865    
866  @Article{tha:89,  @Article{tha:89,
867   author         = {W.C. Thacker},   author         = {W.C. Thacker},
868   year           = 1989,   year           = 1989,
# Line 672  Line 872 
872   volume         = {94, C5},   volume         = {94, C5},
873   pages          = {6,177--6,196},   pages          = {6,177--6,196},
874                    }                    }
875    
876  @Article{tha-rag:94,  @Article{tha-rag:94,
877   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
878   year           = 1994,   year           = 1994,
# Line 682  Line 882 
882   volume         = {99, C5},   volume         = {99, C5},
883   pages          = {10,131--10,141},   pages          = {10,131--10,141},
884                    }                    }
885    
886  @Article{tzi-tha:89,  @Article{tzi-tha:89,
887   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
888   year           = {1989},   year           = {1989},
# Line 692  Line 892 
892   volume         = {19},   volume         = {19},
893   pages          = {1471--1485},   pages          = {1471--1485},
894                    }                    }
895    
896  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
897   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
898                    S. Hwang},                    S. Hwang},
# Line 703  Line 903 
903   volume         = {22},   volume         = {22},
904   pages          = {1434--1457},   pages          = {1434--1457},
905                    }                    }
906    
907  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
908   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
909                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 714  Line 914 
914   volume         = {22},   volume         = {22},
915   pages          = {1458--1485},   pages          = {1458--1485},
916                    }                    }
917    
918  @book{wun:96,  @book{wun:96,
919   author         = {C. Wunsch},   author         = {C. Wunsch},
920   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
921   year           = 1996,   year           = 1996,
922   publisher      = cup,   publisher      = cup,
923   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
924   pages          = {442 pp.},   pages          = {442 pp.},
925                    }                    }
926                                                                      
927  @Article{zha-mar:99,  @Article{zha-mar:99,
928   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
929   year           = 1999,   year           = 1999,
# Line 753  Line 953 
953    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
954    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
955                   modeling},                   modeling},
956    journal =      {JGR},    journal =      jgr,
957    year =         1997,    year =         1997,
958    volume =       102,    volume =       102,
959    number =       {C3},    number =       {C3},
960    pages =        {5733-5752}    pages =        {5733-5752},
961      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
962  }  }
963    
964  @Article{marshall:97b,  @Article{marshall:97b,
965    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
966    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
967                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
968    journal =      {JGR},    journal =      jgr,
969    year =         1997,    year =         1997,
970    volume =       102,    volume =       102,
971    number =       {C3},    number =       {C3},
972    pages =        {5753-5766}    pages =        {5753-5766},
973      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
974  }  }
975    
976  @Article{adcroft:97,  @Article{adcroft:97,
977    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
978    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
979                    coordinate ocean model},                    coordinate ocean model},
980    journal =      {MWR},    journal =      mwr,
981    year =         1997,    year =         1997,
982    volume =       125,    volume =       125,
983    pages =        {2293-2315}    pages =        {2293-2315},
984      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
985      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
986  }  }
987    
988  @Article{adcroft:04,  @Article{adcroft:04a,
989    author =       {Adcroft, A.J. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
990    title =        {Re-scaled height coordinates for accurate representation    title =        {Re-scaled height coordinates for accurate representation
991                    of free-surface flows in ocean circulation models},                    of free-surface flows in ocean circulation models},
992    journal =      om,    journal =      om,
993    year =         2004,    year =         2004,
994    note =         {in press}    volume =       7,
995      pages =        {269-284},
996      doi   =        {10.1016/j.ocemod.2003.09.003},
997    }
998    
999    @Article{adcroft:04b,
1000      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
1001      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
1002                      on the Expanded Spherical Cube},
1003      journal =      mwr,
1004      year =         2004,
1005      volume =       132,
1006      pages =        {2845-2863},
1007      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
1008      doi     =      {10.1175/MWR2823.1},
1009    }
1010    
1011    @inproceedings{adcroft:04c,
1012      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
1013                      and P. Heimbach},
1014      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
1015      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
1016                     Recent developments in numerical methods for atmosphere and
1017                     ocean modelling},
1018      year =         2004,
1019      pages =        {139-149},
1020      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
1021     publisher =     ecmwf
1022    }
1023    
1024    @Article{marshall:04,
1025      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
1026      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
1027      journal =      mwr,
1028      year =         2004,
1029      volume =       132,
1030      pages =        {2882-2894},
1031      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
1032      doi    =       {10.1175/MWR2835.1},
1033  }  }
1034    
1035  @Article{visbeck:97,  @Article{visbeck:97,
1036    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
1037    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
1038                    coarse-resolution ocean circulation models},    journal =      jpo,
   journal =      {JPO},  
1039    year =         1997,    year =         1997,
1040    volume =       27,    volume =       27,
1041    number =       3,    number =       3,
# Line 814  Line 1055 
1055    pages =        {1-51}    pages =        {1-51}
1056  }  }
1057    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
1058  @Article{mjn:99,  @Article{mjn:99,
1059    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
1060    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 847  Line 1079 
1079    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
1080    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
1081                    at both high and low resolutions},                    at both high and low resolutions},
1082    journal =      {MWR},    journal =      mwr,
1083    year =         1999,    year =         1999,
1084    volume =       127,    volume =       127,
1085    pages =        {1928-1936}    pages =        {1928-1936},
1086      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1087      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1088  }  }
1089    
1090  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 865  Line 1099 
1099  @Article{wardle:00,  @Article{wardle:00,
1100    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
1101    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
1102    journal =      {JPO},    journal =      jpo,
1103    year =         2000,    year =         2000,
1104    volume =       30,    volume =       30,
1105    number =       10,    number =       10,
# Line 882  Line 1116 
1116  }  }
1117    
1118  @Article{adcroft:02,  @Article{adcroft:02,
1119    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1120    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1121    journal =      om,    journal =      om,
1122    year =         2002,    year =         2002,
# Line 900  Line 1134 
1134    volume =       17    volume =       17
1135  }  }
1136    
1137    @Article{miller_white:84,
1138      author =       {Miller, M. J. and White, A. A.},
1139      title =        {On the non-hydrostatic equations in pressure
1140                      and sigma coordiantes},
1141      journal =      qjrms,
1142      year =         1984,
1143      volume =       110,
1144      pages =        {515-533}
1145    }
1146    
1147    @Article{white:89,
1148      author =       {White, A. A.},
1149      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1150      journal =      qjrms,
1151      year =         1989,
1152      volume =       115,
1153      pages =        {1243-1251}
1154    }
1155    
1156  @Article{adcroft:98,  @Article{adcroft:98,
1157    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1158    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 921  Line 1174 
1174    
1175  @Article{griffies:00,  @Article{griffies:00,
1176    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1177    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1178                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1179    journal =      {MWR},    journal =      mwr,
1180    year =         2000,    year =         2000,
1181    volume =       128,    volume =       128,
1182    number =       8,    number =       8,
# Line 934  Line 1187 
1187    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1188    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1189                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1190    journal =      {JCP},    journal =      jcp,
1191    year =         1993,    year =         1993,
1192    volume =       105,    volume =       105,
1193    number =       2,    number =       2,
# Line 950  Line 1203 
1203    pages =        {221-244}    pages =        {221-244}
1204  }  }
1205    
1206    @Article{Cox87,
1207      author =       {M. D. Cox},
1208      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1209      journal =      {Ocean modelling},
1210      year =         1987,
1211      volume =       74,
1212      pages =        {1-5 (Unpublished manuscript)}
1213    }
1214    
1215    @Article{gretal:98,
1216      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1217      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1218      journal =      jpo,
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1220      volume =       28,
1221      pages =        {805-830}
1222    }
1223    
1224    @ARTICLE{gr:98,
1225      author =       {S. M. Griffies},
1226      title =        {The {Gent-McWilliams} Skew Flux},
1227      journal =      jpo,
1228      year =         1998,
1229      volume =       28,
1230      pages =        {831-841}
1231    }
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1233    
1234    @Article{gkw:91,
1235      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1236      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1237      journal =      climd,
1238      year =         1991,
1239      volume =       5,
1240      number =       4,
1241      pages =        {211-226},
1242      doi   =        {10.1007/BF00210006}
1243    }
1244    
1245  @Article{dm:95,  @Article{dm:95,
1246    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1247    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1248    journal =      {JC},    journal =      jclim,
1249    year =         1995,    year =         1995,
1250    volume =       8,    volume =       8,
1251    number =       12,    number =       12,
1252    pages =        {2967-2987}    pages =        {2967-2987}
1253  }  }
1254    
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1255  @Article{gkw:99,  @Article{gkw:99,
1256    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1257    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
1258                    coarse-resolution numerical models},    journal =      jpo,
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1259    year =         1999,    year =         1999,
1260    volume =       29,    volume =       29,
1261    number =       8,    number =       8,
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1263  }  }
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1265  @Article{roe:85,  @incollection{roe:85,
1266    author =       {Roe, P.L.},   author         = {P.L. Roe},
1267    title =        {Some contributions to the modeling of discontinuous flows},   year           = 1985,
1268    journal =      {Lect. Notes Appl. Math.},   title          = {Some contributions to the modelling of discontinuous flows},
1269    year =         1985,   booktitle      = {Large-Scale Computations in Fluid Mechanics},
1270    volume =       22,   series         = {Lectures in Applied Mathematics},
1271    pages =        {163-193}   volume         = 22,
1272     pages          = {163-193},
1273     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1274     publisher      = {American Mathematical Society},
1275     address        = {Providence, RI},
1276  }  }
1277    
1278  @Article{trenberth90,  @Article{trenberth90,
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1286  }  }
1287    
1288  @Article{molteni:03,  @Article{molteni:03,
1289    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1290    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1291                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1292                    multidecadal experiments},                    multidecadal experiments},
1293    journal =      climd,    journal =      climd,
1294    year =         2003,    year =         2003,
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1297  }  }
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1299  @Article{jiang99,  @Article{jiang99,
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1301    title =        {An Assessment of the {G}eophysical {F}luid    title =        {An Assessment of the {G}eophysical {F}luid
1302                    {D}ynamics {L}aboratory Ocean Model with Coarse                    {D}ynamics {L}aboratory Ocean Model with Coarse
1303                    Resolution: Annual-Mean Climatology},                    Resolution: Annual-Mean Climatology},
# Line 1073  Line 1357 
1357    pages =        {53 pp.}    pages =        {53 pp.}
1358  }  }
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1360    @ARTICLE{zha98a,
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1362                     and D. A. Rothrock",
1363      TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1364      JOURNAL     = jpo,
1365      YEAR        = 1998,
1366      VOLUME      = 28,
1367      PAGES       = "191-217"
1368    }
1369    
1370    @ARTICLE{sem76,
1371      AUTHOR      = "Semtner, Jr., Albert J.",
1372      TITLE       = "A model for the thermodynamic growth of sea ice in
1373                     numerical investigations of climate",
1374      JOURNAL     = jpo,
1375      YEAR        = 1976,
1376      VOLUME      = 6,
1377      PAGES       = "379-389"
1378    }
1379    
1380    @ARTICLE{win00,
1381      AUTHOR      = "M. Winton",
1382      TITLE       = "A reformulated three-layer sea ice model",
1383      JOURNAL     = jaot,
1384      YEAR        = 2000,
1385      VOLUME      = 17,
1386      PAGES       = "525-531"
1387    }
1388    
1389    @ARTICLE{hib79,
1390      author =       {Hibler, III, W. D.},
1391      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1392      JOURNAL     = jpo,
1393      YEAR        = 1979,
1394      VOLUME      = 9,
1395      PAGES       = "815-846"
1396    }
1397    
1398    @ARTICLE{fla92,
1399      AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1400      TITLE       = "Modeling pack ice as a cavitating fluid",
1401      JOURNAL     = jpo,
1402      YEAR        = 1992,
1403      VOLUME      = 22,
1404      PAGES       = "626-651"
1405    }
1406    
1407    @ARTICLE{hun97,
1408      AUTHOR      = "E. C. Hunke and J. K. Dukowicz",
1409      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1410      JOURNAL     = jpo,
1411      YEAR        = 1997,
1412      VOLUME      = 27,
1413      PAGES       = "1849--1867"
1414    }
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1416    @Article{hun01,
1417      author =       {Elizabeth C. Hunke},
1418      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1419                      Model: Linearization Issues},
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1422      volume =       170,
1423      pages =        {18--38},
1424      doi =          {10.1006/jcph.2001.6710}
1425    }
1426    
1427    @ARTICLE{zha00,
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1429      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1430      JOURNAL     = jgr,
1431      YEAR        = 2000,
1432      VOLUME      = 105,
1433      PAGES       = "3325--3338"
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1448      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1449                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
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1451      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1452      year =         {2005},
1453      OPTnumber =    {122},
1454      address =      {Cambridge, MA},
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1456    }
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1460      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1461                      Biogeochemistry Models},
1462      journal =      {Ocean Modeling},
1463      year =         {{in press}},
1464      OPTkey =       {},
1465      OPTvolume =    {},
1466      OPTnumber =    {},
1467      OPTpages =     {},
1468    }
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1471      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1472      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1473                      Equatorial Pacific and the North Atlantic},
1474      journal =      {Global Biogeochemical Cycles},
1475      year =         {2004},
1476      OPTkey =       {},
1477      volume =       {18},
1478      number =       {doi:10.1029/2003GB002179},
1479      OPTpages =     {},
1480    }
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1483      author =       {K. Trenberth and J. Olson and W. Large},
1484      title =        {A global wind stress climatology based on ECMWF analyses},
1485      institution =  {NCAR},
1486      year =         {1989},
1487      OPTkey =       {},
1488      OPTtype =      {},
1489      number =       {NCAR/TN-338+STR},
1490      address =      {Boulder, CO},
1491      OPTmonth =     {},
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1498      year =         {1992},
1499      OPTkey =       {},
1500      volume =       {97},
1501      OPTnumber =    {},
1502      pages =        {7373--7382},
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1510     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
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1521     pages        = {762-772}
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1526     year         = {1990},
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1540     type         = {NASA Technical Memorandum},
1541     number       = {104606-Vol 3},
1542     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1588     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
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1590     pages        = {406-425},
1591     publisher    = {American Meteorological Society}
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1620     number       = {104538},
1621     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1707     institution  = {National Aeronautics and Space Administration},
1708     type         = {NASA Technical Memorandum},
1709     number       = {104606 Volume 10},
1710     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
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1805                      Coordinate z$^\ast$},
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1818                      {C}omparison between Models and Observations in the
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1899      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
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1960                      Enthalpy Distribution Model in Generalized
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2031                      of Conservative Boundary Conditions at an Ice-Ocean
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2055      title =        {On the Convergence of the Modified
2056                      Elastic-Viscous-Plastic Method of Solving for
2057                      Sea-Ice Dynamics},
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2064    @Article{kimmritz16,
2065      author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
2066      title =        {The Adaptive {EVP} Method for Solving the Sea Ice Momentum Equation},
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2114    @Article{losch14:_jfnk,
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2116                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
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2129      title =        {Numerical Convergence of Viscous-Plastic Sea Ice
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2132      year =         2009,
2133      volume =       114,
2134      number =       {C05009},
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2137    @Article{lemieux10,
2138      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan
2139                      Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen
2140                      Thomas and David Huard and Jean-Pierre Auclair},
2141      title =        {Improving the Numerical Convergence of
2142                      Viscous-Plastic Sea Ice Models with the
2143                      {J}acobian-Free {N}ewton-{K}rylov Method},
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2146      volume =       229,
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2150    @Article{lemieux12,
2151      author =       {Jean-Fran{\c{c}}ois Lemieux and Dana Knoll and Bruno
2152                      Tremblay and David M. Holland and Martin Losch},
2153      title =        {A Comparison of the {J}acobian-free
2154                      {N}ewton-{K}rylov Method and the {EVP} Model for
2155                      Solving the Sea Ice Momentum Equation with a
2156                      Viscous-Plastic Formulation: a Serial Algorithm
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2167      Title =        {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey
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2171      Volume =       193,
2172      Pages =        {357--397},
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2194     title          = {Evaluation of ocean model ventilation with CFC-11:
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