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# Line 4  Line 4 
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6  @string{cch     = {Clim.\ Change}}  @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{cup     = {Cambridge University Press}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{dao     = {Dyn.~Atmos.~Oceans}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
10    @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
11    @string{dsr     = {Deep Sea Res.}}
12    @string{ecmwf   = {ECMWF}}
13    @string{eos     = {Eos~Trans.\ AGU}}
14    @string{esa     = {European Space Agency (ESA)}}
15    @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16    @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
17    @string{gaos    = {Global Atmos.~Ocean System}}
18    @string{grl     = {Geophys.~Res.~Lett.}}
19    @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
20    @string{ifremer = {IFREMER/CERSAT}}
21    @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
22  @string{jam     = {J.~Appl.~Meteor.}}  @string{jam     = {J.~Appl.~Meteor.}}
23  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
24    @string{jas     = {J.~Atmos.~Sci.}}
25  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
26  @string{jcp     = {J.~Comput.~Phys.}}  @string{jcp     = {J.~Comput.~Phys.}}
 @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  
27  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
28  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jgr     = {J.~Geophys.~Res.}}
29    @string{ijrs    = {Int.~J.~Remote Sensing}}
30  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
31  @string{om      = {Ocean Modelling}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
32  @string{gaos    = {Global Atmos.~Ocean System}}  @string{mpi     = {MPI f\"ur Meteorologie}}
 @string{grl     = {Geophys.~Res.~Lett.}}  
 @string{dsr     = {Deep Sea Res.}}  
 @string{dao     = {Dyn.~Atmos.~Oceans}}  
33  @string{mwr     = {Mon.~Wea.~Rev.}}  @string{mwr     = {Mon.~Wea.~Rev.}}
34    @string{om      = {Ocean Modelling}}
35    @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
37    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38  @string{tel     = {Tellus}}  @string{tel     = {Tellus}}
 @string{cup     = {Cambridge University Press}}  
 @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}  
 @string{ifremer = {IFREMER/CERSAT}}  
 @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}  
 @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}  
 @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}  
 @string{mpi     = {MPI f\"ur Meteorologie}}  
 @string{ecmwf   = {ECMWF}}  
 @string{estec   = {European Space Research and Technology Centre  
                         (ESTEC)}}  
 @string{esa     = {European Space Agency (ESA)}}  
 @string{eos     = {Eos~Trans.\ AGU}}  
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 75  Line 76 
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @Article{bouillon13,
80      author =       {Sylvain Bouillon and Thierry Fichefet and Vincent
81                      Legat and Gurvan Madec},
82      title =        {The Elastic-Viscous-Plastic Method Revisited},
83      journal =      om,
84      volume =       71,
85      number =       0,
86      pages =        {2--12},
87      year =         2013,
88      note =         {Arctic Ocean},
89      issn =         {1463-5003},
90      doi =          {10.1016/j.ocemod.2013.05.013},
91      url =          {http://dx.doi.org/10.1016/j.ocemod.2013.05.013},
92    }
93  @ARTICLE{bryan:84,  @ARTICLE{bryan:84,
94    author = {Kirk Bryan},    author = {Kirk Bryan},
95    title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},    title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
# Line 111  Line 126 
126   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
127                    }                    }
128    
129    @Article{castro-morales14,
130      author =       {Karel Castro-Morales and Frank Kauker and Martin
131                      Losch and Stefan Hendricks and Kathrin Riemann-Campe
132                      and R{\"u}diger Gerdes},
133      title =        {Sensitivity of Simulated {A}rctic Sea Ice to
134                      Realistic Ice Thickness Distributions and Snow
135                      Parameterizations},
136      journal =      jgr,
137      issn =         {2169-9291},
138      year =         2014,
139      volume =       119,
140      number =       1,
141      pages =        {559--571},
142      url =          {http://dx.doi.org/10.1002/2013JC009342},
143      doi =          {10.1002/2013JC009342},
144    }
145    
146  @Article{cou-tal:87,  @Article{cou-tal:87,
147   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
148   year           = 1987,   year           = 1987,
# Line 236  Line 268 
268   pages          = {1891--1910},   pages          = {1891--1910},
269                    }                    }
270    
271    @Article{for-eta:15,
272     author         = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.},
273     title          = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation},
274     journal        = {Geoscientific Model Development},
275     volume         = {8},
276     year           = {2015},
277     number         = {10},
278     pages          = {3071--3104},
279     url            = {http://www.geosci-model-dev.net/8/3071/2015/},
280     doi            = {10.5194/gmd-8-3071-2015}
281    }
282    
283  @Article{gas-eta:90,  @Article{gas-eta:90,
284   author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},   author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
285   year           = 1990,   year           = 1990,
# Line 694  Line 738 
738                    }                    }
739    
740  @article{utke-etal:08,  @article{utke-etal:08,
741          Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},    Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
742          Date-Modified = {2007-11-19 10:15:08 -0500},                    and M. Strout and P. Heimbach and C. Hill and
743          Journal = {{ACM} Transactions on Mathematical Software},                    D. Ozyurt and C. Wunsch},
744          Pages = {~},    Date-Modified ={2007-11-19 10:15:08 -0500},
745          Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},    Journal =      {{ACM} Transactions on Mathematical Software},
746          Volume = {34(4)},    Pages =        {~},
747          Year = {2008}}    Title =        {OpenAD/F: A modular open source tool for automatic
748                      differentiation of Fortran codes},
749      Volume =       {34(4)},
750      Year =         2008
751    }
752    
753  @Article{DaSilva94,  @Article{DaSilva94,
754   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
# Line 730  Line 778 
778   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
779                    }                    }
780    
781  @ARTICLE{stam-etal:02,  @article{stam-etal:02,
782    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},    author =       {D. Stammer and C. Wunsch and R. Giering and
783    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},                    C. Eckert and P. Heimbach and J. Marotzke and
784    journal = jgr,                    A. Adcroft and C.N. Hill and J. Marshall},
785    year = {2002a},    title =        {The global ocean circulation and transports during
786    volume = {107(C9)},                    1992 -- 1997, estimated from ocean observations and
787    pages = {3118},                    a general circulation model.},
788    doi   = {10.1029/2001JC000888},    journal =      jgr,
789      year =         {2002a},
790      volume =       {107(C9)},
791      pages =        {3118},
792      doi =          {10.1029/2001JC000888},
793  }  }
794    
795    
# Line 1852  atmospheric boundary layer.}, Line 1904  atmospheric boundary layer.},
1904    number =       {393--426}    number =       {393--426}
1905  }  }
1906    
1907  @ARTICLE{menemenlis05,  @Article{menemenlis05,
1908    author =       {D. Menemenlis and C. Hill and A. Adcroft and    author =       {D. Menemenlis and C. Hill and A. Adcroft and
1909                    J.-M. Campin and B. Cheng and B. Ciotti and                    J.-M. Campin and B. Cheng and B. Ciotti and
1910                    I. Fukumori and A. Koehl and P. Heimbach and                    I. Fukumori and A. Koehl and P. Heimbach and
# Line 1959  atmospheric boundary layer.}, Line 2011  atmospheric boundary layer.},
2011    pages =        {1787--1800}    pages =        {1787--1800}
2012  }  }
2013    
2014    @Article{hutchings04,
2015      author =       {Jennifer K. Hutchings and Hrvoje Jasak and Seymour
2016                      W. Laxon},
2017      title =        {A Strength Implicit Correction Scheme for the
2018                      Viscous-Plastic Sea Ice Model},
2019      journal =      om,
2020      year =         2004,
2021      volume =       7,
2022      number =       {1--2},
2023      pages =        {111-133},
2024      doi =          {10.1016/S1463-5003(03)00040-4}
2025    }
2026    
2027  @Article{jenkins01,  @Article{jenkins01,
2028    author =       {Adrian Jenkins and Hartmut H. Hellmer and David    author =       {Adrian Jenkins and Hartmut H. Hellmer and David
2029                    M. Holland},                    M. Holland},
# Line 1970  atmospheric boundary layer.}, Line 2035  atmospheric boundary layer.},
2035    volume =       31,    volume =       31,
2036    pages =        {285--296}}    pages =        {285--296}}
2037    
2038    @Article{kalnay96,
2039      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
2040                      W. Collins and D. Deaven and L. Gandin and
2041                      M. Iredell and S. Saha and G. White and J. Woollen
2042                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2043                      W. Higgins and J. Janowiak and K. C. Mo and
2044                      C. Ropelewski and J. Wang and A. Leetmaa and
2045                      R. Reynolds and R. Jenne and D. Joseph},
2046      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2047      journal =      bams,
2048      year =         1996,
2049      volume =       77,
2050      pages =        {437--471}
2051    }
2052    
2053    @Article{kimmritz15,
2054      author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
2055      title =        {On the Convergence of the Modified
2056                      Elastic-Viscous-Plastic Method of Solving for
2057                      Sea-Ice Dynamics},
2058      journal =      jcp,
2059      year =         2015,
2060      volume =       296,
2061      pages =        {90--100},
2062      doi =          {10.1016/j.jcp.2015.04.051}}
2063    
2064    @Article{kimmritz16,
2065      author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
2066      title =        {The Adaptive {EVP} Method for Solving the Sea Ice Momentum Equation},
2067      journal =      om,
2068      year =         2016,
2069      url =          {http://mitgcm.org/~mlosch/adaptiveEVP_accepted.pdf},
2070      OPTvolume =    {},
2071      OPTnumber =    {},
2072      OPTpages =     {},
2073      OPTmonth =     {},
2074      OPTnote =      {},
2075      OPTannote =    {},
2076      OPTdoi =       {}}
2077    
2078    @Article{klymaklegg10,
2079      author =       {Klymak, Jody M. and Sonya M. Legg},
2080      title =        {A simple mixing scheme for models that resolve
2081                      breaking internal waves},
2082      journal =      om,
2083      year =         2010,
2084      volume =       33,
2085      pages =        {224--234},
2086      doi =          {10.1016/j.ocemod.2010.02.005}
2087    }
2088    
2089  @Article{losch08,  @Article{losch08,
2090    author =       {Martin Losch},    author =       {Martin Losch},
2091    title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean    title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
# Line 1981  atmospheric boundary layer.}, Line 2097  atmospheric boundary layer.},
2097    doi =          {10.1029/2007JC004368}    doi =          {10.1029/2007JC004368}
2098  }  }
2099    
2100    @Article{losch10:_mitsim,
2101      author =       {Losch, Martin and Menemenlis, Dimitris and Campin,
2102                      Jean-Michel and Heimbach, Patrick and Hill, Chris},
2103      title =        {On the formulation of sea-ice models. {P}art 1:
2104                      Effects of different solver implementations and
2105                      parameterizations},
2106      journal =      om,
2107      year =         2010,
2108      volume =       33,
2109      number =       {1--2},
2110      pages =        {129--144},
2111      doi =          {10.1016/j.ocemod.2009.12.008}
2112    }
2113    
2114    @Article{losch14:_jfnk,
2115      author =       {Martin Losch and Annika Fuchs and
2116                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
2117      title =        {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
2118                      for a Coupled Sea Ice-Ocean Model },
2119      journal =      jcp,
2120      volume =       {257},
2121      number =       {A},
2122      pages =        {901--910},
2123      year =         {2014},
2124      doi =          {10.1016/j.jcp.2013.09.026}
2125    }
2126    
2127    @Article{lemieux09,
2128      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay},
2129      title =        {Numerical Convergence of Viscous-Plastic Sea Ice
2130                      Models},
2131      journal =      jgr,
2132      year =         2009,
2133      volume =       114,
2134      number =       {C05009},
2135      doi =          {10.1029/2008JC005017}}
2136    
2137    @Article{lemieux10,
2138      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan
2139                      Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen
2140                      Thomas and David Huard and Jean-Pierre Auclair},
2141      title =        {Improving the Numerical Convergence of
2142                      Viscous-Plastic Sea Ice Models with the
2143                      {J}acobian-Free {N}ewton-{K}rylov Method},
2144      journal =      jcp,
2145      year =         2010,
2146      volume =       229,
2147      pages =        {2840--2852},
2148      doi =          {10.1016/j.jcp.2009.12.011c}}
2149    
2150    @Article{lemieux12,
2151      author =       {Jean-Fran{\c{c}}ois Lemieux and Dana Knoll and Bruno
2152                      Tremblay and David M. Holland and Martin Losch},
2153      title =        {A Comparison of the {J}acobian-free
2154                      {N}ewton-{K}rylov Method and the {EVP} Model for
2155                      Solving the Sea Ice Momentum Equation with a
2156                      Viscous-Plastic Formulation: a Serial Algorithm
2157                      Study},
2158      journal =      jcp,
2159      year =         2012,
2160      volume =       231,
2161      number =       17,
2162      pages =        {5926--5944},
2163      doi =          {10.1016/j.jcp.2012.05.024}}
2164    
2165    @article{knoll04:_jfnk,
2166      Author =       {D.A. Knoll and D.E. Keyes},
2167      Title =        {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey
2168                      of Approaches and Applications},
2169      Journal =      jcp,
2170      Year =         2004,
2171      Volume =       193,
2172      Pages =        {357--397},
2173      doi =          {10.1016/j.jcp.2003.08.010},
2174    }
2175    
2176    @Article{saad93:_fgmres,
2177      author =       {Y. Saad},
2178      title =        {A Flexible Inner-Outer Preconditioned {GMRES}
2179                      Method},
2180      journal =      siscicom,
2181      year =         1993,
2182      volume =       14,
2183      number =       2,
2184      pages =        {461--469}}
2185    
2186  @Article{Dutay02,  @Article{Dutay02,
2187   author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr   author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
2188      and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows      and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
# Line 2022  atmospheric boundary layer.}, Line 2224  atmospheric boundary layer.},
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2225    year =         1990,    year =         1990,
2226    volume =       51,    volume =       51,
2227    pages =        {103--133}}    pages =        {103--133}
2228    }
2229    
2230  @Article{kalnay96,  
2231    author =       {E. Kalnay and M. Kanamitsu and R. Kistler and  @Article{moum96,
2232                    W. Collins and D. Deaven and L. Gandin and    author        = {Moum, J.N.},
2233                    M. Iredell and S. Saha and G. White and J. Woollen    title         = {Energy-containing scales of turbulence in the ocean thermocline},
2234                    and Y. Zhu and M. Chelliah and W. Ebisuzaki and    journal       = jgr,
2235                    W. Higgins and J. Janowiak and K. C. Mo and    year          = 1996,
2236                    C. Ropelewski and J. Wang and A. Leetmaa and    volume        = {101 (C3)},
2237                    R. Reynolds and R. Jenne and D. Joseph},    pages         = {14095--14109}
2238    title =        {The {NMC/NCAR} 40-Year Reanalysis Project},  }
2239    journal =      bams,  
2240    year =         1996,  @Article{seimgregg94,
2241    volume =       77,    author        = {Seim, Harvey E. and Michael C. Gregg},
2242    pages =        {437--471}    title         = {Detailed observations of a naturally occurring shear instability},
2243      journal       = jgr,
2244      year          = 1994,
2245      volume        = {99 (C5)},
2246      pages         = {10049--10073},
2247    }
2248    
2249    @Article{thorpe77,
2250      author        = {Thorpe, S.A.},
2251      title         = {Turbulence and mixing in a Scottish loch},
2252      journal       = ptrsl,
2253      year          = 1977,
2254      volume        = {286},
2255      pages         = {125--181}
2256    }
2257    
2258    @Article{wesson94,
2259      author        = {Wesson, J. C. and  Michael C. Gregg},
2260      title         = {Mixing at Camarinal Sill in the Strait of Gibraltar},
2261      journal       = jgr,
2262      year          = 1994,
2263      volume        = {99 (C5)},
2264      pages         = { 9847--9878}
2265  }  }
2266    
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