--- manual/manual_references.bib 2013/05/15 22:49:36 1.46 +++ manual/manual_references.bib 2014/08/29 17:05:57 1.49 @@ -4,37 +4,38 @@ @string{blm = {Bound.~Layer~Meteorol.}} @string{climd = {Clim.~Dynamics}} @string{cch = {Clim.\ Change}} -@string{jgr = {J.~Geophys.~Res.}} -@string{ijrs = {Int.~J.~Remote Sensing}} -@string{jas = {J.~Atmos.~Sci.}} +@string{cup = {Cambridge University Press}} +@string{dao = {Dyn.~Atmos.~Oceans}} +@string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}} +@string{dnmi = {The Norwegian Meteorological Institute (DNMI)}} +@string{dsr = {Deep Sea Res.}} +@string{ecmwf = {ECMWF}} +@string{eos = {Eos~Trans.\ AGU}} +@string{esa = {European Space Agency (ESA)}} +@string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}} +@string{estec = {European Space Research and Technology Centre (ESTEC)}} +@string{gaos = {Global Atmos.~Ocean System}} +@string{grl = {Geophys.~Res.~Lett.}} +@string{ieee = {IEEE Trans.~Geosci. Remote Sensing}} +@string{ifremer = {IFREMER/CERSAT}} +@string{igarss = {IEEE Press, Piscataway, N.J., USA}} @string{jam = {J.~Appl.~Meteor.}} -@string{jpo = {J.~Phys.~Oceanogr.}} +@string{jaot = {J.~Atmos.~Ocean.~Technol.}} +@string{jas = {J.~Atmos.~Sci.}} @string{jclim = {J.~Clim.}} @string{jcp = {J.~Comput.~Phys.}} -@string{ieee = {IEEE Trans.~Geosci. Remote Sensing}} @string{jfm = {J.~Fluid Mech.}} -@string{jaot = {J.~Atmos.~Ocean.~Technol.}} +@string{jgr = {J.~Geophys.~Res.}} +@string{ijrs = {Int.~J.~Remote Sensing}} @string{jms = {J.~Mar.~Sys.}} -@string{om = {Ocean Modelling}} -@string{gaos = {Global Atmos.~Ocean System}} -@string{grl = {Geophys.~Res.~Lett.}} -@string{dsr = {Deep Sea Res.}} -@string{dao = {Dyn.~Atmos.~Oceans}} +@string{jpo = {J.~Phys.~Oceanogr.}} +@string{mpi = {MPI f\"ur Meteorologie}} @string{mwr = {Mon.~Wea.~Rev.}} +@string{om = {Ocean Modelling}} +@string{ptrsl = {{Phil.~Trans.~R.~Soc.~Lond.}}} @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}} +@string{siscicom= {SIAM J.\ Sci.\ Comput.}} @string{tel = {Tellus}} -@string{cup = {Cambridge University Press}} -@string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}} -@string{ifremer = {IFREMER/CERSAT}} -@string{igarss = {IEEE Press, Piscataway, N.J., USA}} -@string{dnmi = {The Norwegian Meteorological Institute (DNMI)}} -@string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}} -@string{mpi = {MPI f\"ur Meteorologie}} -@string{ecmwf = {ECMWF}} -@string{estec = {European Space Research and Technology Centre - (ESTEC)}} -@string{esa = {European Space Agency (ESA)}} -@string{eos = {Eos~Trans.\ AGU}} @Article{bis-eta:92, author = {C.H. Bishof and G.F. Corliss and L. Green and @@ -694,13 +695,17 @@ } @article{utke-etal:08, - Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch}, - Date-Modified = {2007-11-19 10:15:08 -0500}, - Journal = {{ACM} Transactions on Mathematical Software}, - Pages = {~}, - Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes}, - Volume = {34(4)}, - Year = {2008}} + Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent + and M. Strout and P. Heimbach and C. Hill and + D. Ozyurt and C. Wunsch}, + Date-Modified ={2007-11-19 10:15:08 -0500}, + Journal = {{ACM} Transactions on Mathematical Software}, + Pages = {~}, + Title = {OpenAD/F: A modular open source tool for automatic + differentiation of Fortran codes}, + Volume = {34(4)}, + Year = 2008 +} @Article{DaSilva94, author = {A. da Silva and A. C. Young and S. Levitus}, @@ -730,14 +735,18 @@ address = {Cambridge (MA), USA}, } -@ARTICLE{stam-etal:02, - author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall}, - title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.}, - journal = jgr, - year = {2002a}, - volume = {107(C9)}, - pages = {3118}, - doi = {10.1029/2001JC000888}, +@article{stam-etal:02, + author = {D. Stammer and C. Wunsch and R. Giering and + C. Eckert and P. Heimbach and J. Marotzke and + A. Adcroft and C.N. Hill and J. Marshall}, + title = {The global ocean circulation and transports during + 1992 -- 1997, estimated from ocean observations and + a general circulation model.}, + journal = jgr, + year = {2002a}, + volume = {107(C9)}, + pages = {3118}, + doi = {10.1029/2001JC000888}, } @@ -1852,7 +1861,7 @@ number = {393--426} } -@ARTICLE{menemenlis05, +@Article{menemenlis05, author = {D. Menemenlis and C. Hill and A. Adcroft and J.-M. Campin and B. Cheng and B. Ciotti and I. Fukumori and A. Koehl and P. Heimbach and @@ -1970,6 +1979,32 @@ volume = 31, pages = {285--296}} +@Article{kalnay96, + author = {E. Kalnay and M. Kanamitsu and R. Kistler and + W. Collins and D. Deaven and L. Gandin and + M. Iredell and S. Saha and G. White and J. Woollen + and Y. Zhu and M. Chelliah and W. Ebisuzaki and + W. Higgins and J. Janowiak and K. C. Mo and + C. Ropelewski and J. Wang and A. Leetmaa and + R. Reynolds and R. Jenne and D. Joseph}, + title = {The {NMC/NCAR} 40-Year Reanalysis Project}, + journal = bams, + year = 1996, + volume = 77, + pages = {437--471} +} + +@Article{klymaklegg10, + author = {Klymak, Jody M. and Sonya M. Legg}, + title = {A simple mixing scheme for models that resolve + breaking internal waves}, + journal = om, + year = 2010, + volume = 33, + pages = {224--234}, + doi = {10.1016/j.ocemod.2010.02.005} +} + @Article{losch08, author = {Martin Losch}, title = {Modeling Ice Shelf Cavities in a z-Coordinate Ocean @@ -1981,6 +2016,77 @@ doi = {10.1029/2007JC004368} } +@Article{losch10:_mitsim, + author = {Losch, Martin and Menemenlis, Dimitris and Campin, + Jean-Michel and Heimbach, Patrick and Hill, Chris}, + title = {On the formulation of sea-ice models. {P}art 1: + Effects of different solver implementations and + parameterizations}, + journal = om, + year = 2010, + volume = 33, + number = {1--2}, + pages = {129--144}, + doi = {10.1016/j.ocemod.2009.12.008} +} + +@Article{losch14:_jfnk, + author = {Martin Losch and Annika Fuchs and + Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow}, + title = {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver + for a Coupled Sea Ice-Ocean Model }, + journal = jcp, + volume = {257}, + number = {A}, + pages = {901--910}, + year = {2014}, + doi = {10.1016/j.jcp.2013.09.026} +} + +@Article{lemieux09, + author = {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay}, + title = {Numerical Convergence of Viscous-Plastic Sea Ice + Models}, + journal = jgr, + year = 2009, + volume = 114, + number = {C05009}, + doi = {10.1029/2008JC005017}} + +@Article{lemieux10, + author = {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan + Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen + Thomas and David Huard and Jean-Pierre Auclair}, + title = {Improving the Numerical Convergence of + Viscous-Plastic Sea Ice Models with the + {J}acobian-Free {N}ewton-{K}rylov Method}, + journal = jcp, + year = 2010, + volume = 229, + pages = {2840--2852}, + doi = {10.1016/j.jcp.2009.12.011c}} + +@article{knoll04:_jfnk, + Author = {D.A. Knoll and D.E. Keyes}, + Title = {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey + of Approaches and Applications}, + Journal = jcp, + Year = 2004, + Volume = 193, + Pages = {357--397}, + doi = {10.1016/j.jcp.2003.08.010}, +} + +@Article{saad93:_fgmres, + author = {Y. Saad}, + title = {A Flexible Inner-Outer Preconditioned {GMRES} + Method}, + journal = siscicom, + year = 1993, + volume = 14, + number = 2, + pages = {461--469}} + @Article{Dutay02, author = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows @@ -2022,19 +2128,34 @@ journal = {Geophys. Astrophys. Fl. Dyn.}, year = 1990, volume = 51, - pages = {103--133}} + pages = {103--133} +} -@Article{kalnay96, - author = {E. Kalnay and M. Kanamitsu and R. Kistler and - W. Collins and D. Deaven and L. Gandin and - M. Iredell and S. Saha and G. White and J. Woollen - and Y. Zhu and M. Chelliah and W. Ebisuzaki and - W. Higgins and J. Janowiak and K. C. Mo and - C. Ropelewski and J. Wang and A. Leetmaa and - R. Reynolds and R. Jenne and D. Joseph}, - title = {The {NMC/NCAR} 40-Year Reanalysis Project}, - journal = bams, - year = 1996, - volume = 77, - pages = {437--471} + +@Article{moum96, + author = {Moum, J.N.}, + title = {Energy-containing scales of turbulence in the ocean thermocline}, + journal = jgr, + year = 1996, + volume = {101 (C3)}, + pages = {14095--14109} +} + +@Article{thorpe77, + author = {Thorpe, S.A.}, + title = {Turbulence and mixing in a Scottish loch}, + journal = ptrsl, + year = 1977, + volume = {286}, + pages = {125--181} +} + +@Article{wesson94, + author = {Wesson, J.C. and Gregg, M.C.}, + title = {Mixing at Camarinal Sill in the Strait of Gibraltar}, + journal = jgr, + year = 1994, + volume = {99 (C5)}, + pages = { 9847--9878} } +